Wall clock time and date at job start Tue Mar 31 2020 22:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31786 * 122.75203 * 2 1 4 4 C 1.29021 * 117.12507 * 180.02562 * 3 2 1 5 5 S 1.70978 * 110.17026 * 359.72315 * 4 3 2 6 6 C 1.33641 * 122.75291 * 179.97438 * 2 1 3 7 7 C 1.50706 * 126.03199 * 359.97438 * 6 2 1 8 8 C 1.53000 * 109.47116 * 89.99992 * 7 6 2 9 9 C 1.50696 * 109.47110 * 179.97438 * 8 7 6 10 10 O 1.21281 * 120.00042 * 0.02562 * 9 8 7 11 11 N 1.34784 * 119.99865 * 179.97438 * 9 8 7 12 12 C 1.47145 * 120.98126 * 359.72100 * 11 9 8 13 13 C 1.52883 * 108.60715 * 230.50081 * 12 11 9 14 14 O 1.42960 * 109.29512 * 307.93424 * 13 12 11 15 15 C 1.42967 * 114.16621 * 62.45066 * 14 13 12 16 16 H 1.08993 * 109.50988 * 57.34428 * 15 14 13 17 17 C 1.52996 * 109.55321 * 177.47022 * 15 14 13 18 18 N 1.46503 * 109.47096 * 299.76949 * 17 15 14 19 19 C 1.36937 * 120.00261 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00042 * 359.97438 * 19 18 17 21 21 C 1.38813 * 120.00260 * 180.02562 * 19 18 17 22 22 N 1.31616 * 120.00108 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99946 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47243 * 90.00426 * 23 21 19 25 25 H 1.48500 * 109.47193 * 210.00688 * 23 21 19 26 26 H 1.48507 * 109.46884 * 330.00718 * 23 21 19 27 27 C 1.47154 * 120.98010 * 180.02562 * 11 9 8 28 28 H 1.09005 * 109.46752 * 270.00008 * 1 2 3 29 29 H 1.09004 * 109.47101 * 29.99975 * 1 2 3 30 30 H 1.09000 * 109.47045 * 150.00351 * 1 2 3 31 31 H 1.08003 * 124.91171 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.46646 * 209.99405 * 7 6 2 33 33 H 1.09000 * 109.47248 * 330.00123 * 7 6 2 34 34 H 1.09000 * 109.47214 * 300.00167 * 8 7 6 35 35 H 1.09008 * 109.47142 * 59.99333 * 8 7 6 36 36 H 1.09004 * 109.68607 * 350.28093 * 12 11 9 37 37 H 1.09001 * 109.68562 * 110.83239 * 12 11 9 38 38 H 1.09005 * 109.58081 * 187.92790 * 13 12 11 39 39 H 1.08998 * 109.40631 * 67.84282 * 13 12 11 40 40 H 1.09002 * 109.47332 * 59.76889 * 17 15 14 41 41 H 1.08995 * 109.47163 * 179.77637 * 17 15 14 42 42 H 0.97000 * 120.00206 * 0.02562 * 18 17 15 43 43 H 0.96998 * 120.00295 * 179.97438 * 22 21 19 44 44 H 1.09003 * 109.67994 * 249.16962 * 27 11 9 45 45 H 1.09001 * 109.67737 * 9.71637 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2200 1.1083 0.0000 4 6 3.5040 0.9818 -0.0005 5 16 3.9333 -0.6731 0.0067 6 6 2.2300 -1.1239 0.0005 7 6 1.6847 -2.5289 0.0017 8 6 1.4996 -3.0053 -1.4404 9 6 0.9548 -4.4104 -1.4392 10 8 0.7357 -4.9749 -0.3885 11 7 0.7102 -5.0392 -2.6060 12 6 0.9613 -4.3721 -3.8933 13 6 -0.2892 -4.5036 -4.7630 14 8 -0.6792 -5.8776 -4.8248 15 6 -1.0391 -6.4413 -3.5612 16 1 -1.8490 -5.8600 -3.1207 17 6 -1.4964 -7.8881 -3.7575 18 7 -2.6597 -7.9160 -4.6476 19 6 -3.2468 -9.1104 -4.9698 20 1 -2.8520 -10.0319 -4.5682 21 6 -4.3488 -9.1369 -5.8135 22 7 -4.9134 -10.2848 -6.1228 23 14 -5.0313 -7.5430 -6.5088 24 1 -4.3624 -7.2394 -7.7993 25 1 -6.4928 -7.6853 -6.7302 26 1 -4.7812 -6.4373 -5.5495 27 6 0.1778 -6.4109 -2.6301 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 4.2060 1.8026 -0.0010 32 1 2.3832 -3.1892 0.5156 33 1 0.7237 -2.5452 0.5159 34 1 0.8012 -2.3449 -1.9545 35 1 2.4606 -2.9889 -1.9547 36 1 1.1800 -3.3177 -3.7239 37 1 1.8050 -4.8466 -4.3943 38 1 -0.0749 -4.1404 -5.7681 39 1 -1.0967 -3.9151 -4.3275 40 1 -0.6866 -8.4683 -4.1998 41 1 -1.7666 -8.3178 -2.7930 42 1 -3.0142 -7.0884 -5.0086 43 1 -5.6837 -10.3034 -6.7121 44 1 0.9412 -7.0945 -3.0014 45 1 -0.1221 -6.7059 -1.6245 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733745526.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:34 Heat of formation + Delta-G solvation = -18.984301 kcal Electronic energy + Delta-G solvation = -26788.873999 eV Core-core repulsion = 22933.893863 eV Total energy + Delta-G solvation = -3854.980136 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.69350 -40.23907 -38.59178 -35.26894 -34.86556 -34.56068 -32.35483 -31.44984 -30.59743 -28.78528 -27.94388 -26.07633 -25.17913 -23.66603 -23.56415 -21.97100 -21.01695 -19.33722 -19.26511 -18.59739 -17.77687 -17.37226 -16.67136 -16.32937 -16.10596 -15.77129 -15.28970 -15.12900 -14.72755 -14.41666 -14.36832 -14.08077 -13.94415 -13.29133 -13.23057 -13.09253 -12.95584 -12.89619 -12.75615 -12.59175 -12.50675 -12.18861 -11.99822 -11.82952 -11.29988 -11.25406 -11.12005 -10.84911 -10.57992 -10.21217 -10.10454 -10.05233 -10.00114 -9.67307 -9.57013 -9.14379 -8.89304 -8.71323 -7.21309 -5.74489 -3.09720 0.24327 0.91378 1.30172 2.32338 2.33149 2.62797 3.40318 3.44542 3.47461 3.75243 3.78198 4.02403 4.43187 4.50795 4.53826 4.59921 4.62389 4.70964 4.74220 4.82070 4.90619 4.95574 5.02538 5.13919 5.21643 5.26916 5.33925 5.42783 5.49495 5.52856 5.54004 5.54942 5.57292 5.70195 5.76508 5.87545 5.91418 6.15070 6.43930 6.57176 7.07692 7.26142 7.27658 7.86225 8.00733 8.44144 9.23491 9.95761 10.16039 11.43763 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023625 B = 0.002098 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.894037 B =13340.699657 C =13727.950192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.062 3.938 3 N -0.467 5.467 4 C 0.018 3.982 5 S 0.118 5.882 6 C -0.218 4.218 7 C -0.026 4.026 8 C -0.135 4.135 9 C 0.517 3.483 10 O -0.537 6.537 11 N -0.614 5.614 12 C 0.071 3.929 13 C 0.044 3.956 14 O -0.360 6.360 15 C 0.069 3.931 16 H 0.063 0.937 17 C 0.168 3.832 18 N -0.750 5.750 19 C -0.243 4.243 20 H 0.091 0.909 21 C 0.004 3.996 22 N -0.934 5.934 23 Si 0.888 3.112 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.278 1.278 27 C 0.085 3.915 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.199 0.801 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.106 0.894 39 H 0.053 0.947 40 H 0.037 0.963 41 H 0.045 0.955 42 H 0.365 0.635 43 H 0.259 0.741 44 H 0.080 0.920 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.103 24.248 11.406 33.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.070 4.070 3 N -0.181 5.181 4 C -0.280 4.280 5 S 0.372 5.628 6 C -0.338 4.338 7 C -0.066 4.066 8 C -0.175 4.175 9 C 0.305 3.695 10 O -0.414 6.414 11 N -0.348 5.348 12 C -0.052 4.052 13 C -0.034 4.034 14 O -0.278 6.278 15 C 0.011 3.989 16 H 0.081 0.919 17 C 0.040 3.960 18 N -0.396 5.396 19 C -0.373 4.373 20 H 0.108 0.892 21 C -0.192 4.192 22 N -0.582 5.582 23 Si 0.718 3.282 24 H -0.210 1.210 25 H -0.218 1.218 26 H -0.205 1.205 27 C -0.038 4.038 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.216 0.784 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.099 0.901 38 H 0.124 0.876 39 H 0.071 0.929 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.198 0.802 43 H 0.069 0.931 44 H 0.098 0.902 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 20.703 23.634 11.807 33.565 hybrid contribution -1.207 1.474 -0.507 1.972 sum 19.496 25.108 11.300 33.737 Atomic orbital electron populations 1.20408 0.86921 1.03500 1.03265 1.20295 0.98353 0.86116 1.02200 1.66195 1.05064 1.31613 1.15211 1.28300 0.95236 1.00033 1.04432 1.84113 1.07108 1.03704 1.67874 1.25729 0.94994 1.00609 1.12512 1.19770 1.02744 0.88203 0.95885 1.21708 1.03201 0.93831 0.98802 1.20559 0.77778 0.88004 0.83172 1.90723 1.52429 1.67662 1.30605 1.48179 1.64843 1.15965 1.05827 1.22438 0.99726 0.98532 0.84502 1.22865 0.94852 0.85030 1.00694 1.88152 1.86506 1.23606 1.29565 1.22858 0.94599 0.97466 0.84015 0.91932 1.20608 0.90615 0.89829 0.94941 1.42544 1.33495 1.06196 1.57324 1.19051 1.08803 0.85857 1.23613 0.89156 1.24661 0.98286 0.96353 0.99878 1.69703 1.24702 1.23498 1.40309 0.86495 0.78223 0.84176 0.79301 1.21020 1.21841 1.20475 1.22327 0.96739 0.82181 1.02503 0.90415 0.90452 0.90556 0.78434 0.89515 0.88610 0.88470 0.88623 0.89050 0.90117 0.87623 0.92890 0.94466 0.93775 0.80235 0.93078 0.90167 0.87811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 9.82 36.01 0.35 -0.21 16 2 C 0.06 0.53 6.74 -84.22 -0.57 -0.04 16 3 N -0.47 -4.30 10.53 -11.89 -0.13 -4.43 16 4 C 0.02 0.12 12.23 51.58 0.63 0.75 16 5 S 0.12 0.74 23.22 -107.50 -2.50 -1.76 16 6 C -0.22 -1.67 5.84 -35.92 -0.21 -1.88 16 7 C -0.03 -0.20 4.44 -27.88 -0.12 -0.32 16 8 C -0.13 -0.97 4.06 -27.89 -0.11 -1.09 16 9 C 0.52 5.67 7.71 -10.98 -0.08 5.59 16 10 O -0.54 -7.80 15.45 5.56 0.09 -7.72 16 11 N -0.61 -6.73 3.03 -172.55 -0.52 -7.25 16 12 C 0.07 0.59 6.51 -3.75 -0.02 0.57 16 13 C 0.04 0.46 6.97 37.10 0.26 0.72 16 14 O -0.36 -5.64 10.15 -35.23 -0.36 -6.00 16 15 C 0.07 1.08 2.86 -26.60 -0.08 1.01 16 16 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 17 C 0.17 3.25 5.96 -4.04 -0.02 3.22 16 18 N -0.75 -18.27 5.30 -59.91 -0.32 -18.59 16 19 C -0.24 -7.01 10.47 -15.06 -0.16 -7.17 16 20 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 21 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 22 N -0.93 -29.65 13.97 55.49 0.78 -28.88 16 23 Si 0.89 22.59 27.74 -169.99 -4.71 17.87 16 24 H -0.28 -7.18 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 26 H -0.28 -6.70 6.52 56.52 0.37 -6.33 16 27 C 0.09 1.11 5.93 -3.56 -0.02 1.09 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.46 7.18 -51.93 -0.37 0.09 16 31 H 0.20 0.67 8.06 -52.48 -0.42 0.25 16 32 H 0.09 0.72 8.10 -51.93 -0.42 0.30 16 33 H 0.10 0.79 7.39 -51.93 -0.38 0.41 16 34 H 0.10 0.58 7.48 -51.93 -0.39 0.19 16 35 H 0.10 0.55 8.03 -51.92 -0.42 0.14 16 36 H 0.09 0.49 6.05 -51.93 -0.31 0.18 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.36 8.82 5.41 -40.82 -0.22 8.60 16 43 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 44 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.10 1.42 7.08 -51.93 -0.37 1.06 16 LS Contribution 379.57 15.07 5.72 5.72 Total: -1.00 -36.14 379.57 -8.91 -45.06 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -6.70 Total: 3.71 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -0.26 Total: 2.26 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: -0.19 Total: -59.14 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.27 Total: -13.71 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.71 Total: 17.87 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -2.50 Total: -1.76 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.14 -8.91 -45.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733745526.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.071 kcal (2) G-P(sol) polarization free energy of solvation -36.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds