Wall clock time and date at job start Tue Mar 31 2020 22:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31786 * 122.75203 * 2 1 4 4 C 1.29021 * 117.12507 * 180.02562 * 3 2 1 5 5 S 1.70978 * 110.17026 * 359.72315 * 4 3 2 6 6 C 1.33641 * 122.75291 * 179.97438 * 2 1 3 7 7 C 1.50706 * 126.03199 * 359.97438 * 6 2 1 8 8 C 1.53000 * 109.47116 * 89.99992 * 7 6 2 9 9 C 1.50696 * 109.47110 * 179.97438 * 8 7 6 10 10 O 1.21281 * 120.00042 * 0.02562 * 9 8 7 11 11 N 1.34784 * 119.99865 * 179.97438 * 9 8 7 12 12 C 1.47145 * 120.98126 * 359.72100 * 11 9 8 13 13 C 1.52883 * 108.60715 * 230.50081 * 12 11 9 14 14 O 1.42960 * 109.29512 * 307.93424 * 13 12 11 15 15 C 1.42967 * 114.16621 * 62.45066 * 14 13 12 16 16 H 1.08993 * 109.50988 * 57.34428 * 15 14 13 17 17 C 1.52996 * 109.55321 * 177.47022 * 15 14 13 18 18 N 1.46503 * 109.47096 * 299.76949 * 17 15 14 19 19 C 1.36937 * 120.00261 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00042 * 359.97438 * 19 18 17 21 21 C 1.38813 * 120.00260 * 180.02562 * 19 18 17 22 22 N 1.31616 * 120.00108 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99946 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47243 * 90.00426 * 23 21 19 25 25 H 1.48500 * 109.47193 * 210.00688 * 23 21 19 26 26 H 1.48507 * 109.46884 * 330.00718 * 23 21 19 27 27 C 1.47154 * 120.98010 * 180.02562 * 11 9 8 28 28 H 1.09005 * 109.46752 * 270.00008 * 1 2 3 29 29 H 1.09004 * 109.47101 * 29.99975 * 1 2 3 30 30 H 1.09000 * 109.47045 * 150.00351 * 1 2 3 31 31 H 1.08003 * 124.91171 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.46646 * 209.99405 * 7 6 2 33 33 H 1.09000 * 109.47248 * 330.00123 * 7 6 2 34 34 H 1.09000 * 109.47214 * 300.00167 * 8 7 6 35 35 H 1.09008 * 109.47142 * 59.99333 * 8 7 6 36 36 H 1.09004 * 109.68607 * 350.28093 * 12 11 9 37 37 H 1.09001 * 109.68562 * 110.83239 * 12 11 9 38 38 H 1.09005 * 109.58081 * 187.92790 * 13 12 11 39 39 H 1.08998 * 109.40631 * 67.84282 * 13 12 11 40 40 H 1.09002 * 109.47332 * 59.76889 * 17 15 14 41 41 H 1.08995 * 109.47163 * 179.77637 * 17 15 14 42 42 H 0.97000 * 120.00206 * 0.02562 * 18 17 15 43 43 H 0.96998 * 120.00295 * 179.97438 * 22 21 19 44 44 H 1.09003 * 109.67994 * 249.16962 * 27 11 9 45 45 H 1.09001 * 109.67737 * 9.71637 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2200 1.1083 0.0000 4 6 3.5040 0.9818 -0.0005 5 16 3.9333 -0.6731 0.0067 6 6 2.2300 -1.1239 0.0005 7 6 1.6847 -2.5289 0.0017 8 6 1.4996 -3.0053 -1.4404 9 6 0.9548 -4.4104 -1.4392 10 8 0.7357 -4.9749 -0.3885 11 7 0.7102 -5.0392 -2.6060 12 6 0.9613 -4.3721 -3.8933 13 6 -0.2892 -4.5036 -4.7630 14 8 -0.6792 -5.8776 -4.8248 15 6 -1.0391 -6.4413 -3.5612 16 1 -1.8490 -5.8600 -3.1207 17 6 -1.4964 -7.8881 -3.7575 18 7 -2.6597 -7.9160 -4.6476 19 6 -3.2468 -9.1104 -4.9698 20 1 -2.8520 -10.0319 -4.5682 21 6 -4.3488 -9.1369 -5.8135 22 7 -4.9134 -10.2848 -6.1228 23 14 -5.0313 -7.5430 -6.5088 24 1 -4.3624 -7.2394 -7.7993 25 1 -6.4928 -7.6853 -6.7302 26 1 -4.7812 -6.4373 -5.5495 27 6 0.1778 -6.4109 -2.6301 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 4.2060 1.8026 -0.0010 32 1 2.3832 -3.1892 0.5156 33 1 0.7237 -2.5452 0.5159 34 1 0.8012 -2.3449 -1.9545 35 1 2.4606 -2.9889 -1.9547 36 1 1.1800 -3.3177 -3.7239 37 1 1.8050 -4.8466 -4.3943 38 1 -0.0749 -4.1404 -5.7681 39 1 -1.0967 -3.9151 -4.3275 40 1 -0.6866 -8.4683 -4.1998 41 1 -1.7666 -8.3178 -2.7930 42 1 -3.0142 -7.0884 -5.0086 43 1 -5.6837 -10.3034 -6.7121 44 1 0.9412 -7.0945 -3.0014 45 1 -0.1221 -6.7059 -1.6245 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733745526.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:33 Heat of formation + Delta-G solvation = -44.942671 kcal Electronic energy + Delta-G solvation = -26789.999638 eV Core-core repulsion = 22933.893863 eV Total energy + Delta-G solvation = -3856.105775 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.54196 -40.84300 -39.61359 -36.82698 -35.77429 -35.47482 -34.01737 -32.47861 -31.83163 -29.60167 -28.89970 -27.24058 -25.84892 -24.80539 -24.38423 -23.47084 -22.31949 -20.13663 -19.84335 -19.76199 -19.11434 -18.26831 -17.75697 -17.11555 -16.99105 -16.69320 -16.33661 -16.18416 -15.85086 -15.74861 -15.27971 -15.09007 -14.76052 -14.49253 -14.46393 -14.23350 -13.94516 -13.75301 -13.63841 -13.49448 -13.42160 -13.16469 -12.93230 -12.83801 -12.61973 -12.50868 -12.31555 -12.04768 -11.84826 -11.83093 -11.67065 -11.22546 -11.00076 -10.90815 -10.60111 -10.20888 -9.66298 -9.64498 -9.31900 -8.03206 -5.36811 -0.26350 0.43112 0.80076 1.37111 1.41516 1.48472 1.51083 1.72128 1.85398 2.48396 2.71430 3.27290 3.28397 3.38533 3.44446 3.82764 3.88942 3.90652 3.95585 3.99333 4.05774 4.16608 4.24277 4.30087 4.31528 4.35394 4.48777 4.54706 4.67166 4.72163 4.75164 4.77790 4.87583 4.91355 4.92766 4.98356 5.01915 5.05647 5.26011 5.36186 5.73224 6.17727 6.22108 6.27510 6.76722 7.03135 7.06426 7.81632 8.01913 9.18039 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023625 B = 0.002098 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.894037 B =13340.699657 C =13727.950192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.049 3.951 3 N -0.501 5.501 4 C 0.019 3.981 5 S 0.147 5.853 6 C -0.228 4.228 7 C -0.021 4.021 8 C -0.124 4.124 9 C 0.515 3.485 10 O -0.579 6.579 11 N -0.615 5.615 12 C 0.074 3.926 13 C 0.034 3.966 14 O -0.389 6.389 15 C 0.085 3.915 16 H 0.057 0.943 17 C 0.162 3.838 18 N -0.753 5.753 19 C -0.236 4.236 20 H 0.059 0.941 21 C -0.065 4.065 22 N -0.982 5.982 23 Si 0.960 3.040 24 H -0.277 1.277 25 H -0.294 1.294 26 H -0.256 1.256 27 C 0.093 3.907 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.226 0.774 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.129 0.871 37 H 0.091 0.909 38 H 0.129 0.871 39 H 0.056 0.944 40 H 0.034 0.966 41 H 0.047 0.953 42 H 0.368 0.632 43 H 0.259 0.741 44 H 0.084 0.916 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.820 27.549 10.957 36.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 N -0.216 5.216 4 C -0.278 4.278 5 S 0.401 5.599 6 C -0.349 4.349 7 C -0.061 4.061 8 C -0.164 4.164 9 C 0.305 3.695 10 O -0.459 6.459 11 N -0.348 5.348 12 C -0.048 4.048 13 C -0.043 4.043 14 O -0.308 6.308 15 C 0.026 3.974 16 H 0.075 0.925 17 C 0.035 3.965 18 N -0.399 5.399 19 C -0.367 4.367 20 H 0.077 0.923 21 C -0.256 4.256 22 N -0.633 5.633 23 Si 0.787 3.213 24 H -0.204 1.204 25 H -0.220 1.220 26 H -0.181 1.181 27 C -0.031 4.031 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.243 0.757 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.147 0.853 37 H 0.109 0.891 38 H 0.147 0.853 39 H 0.075 0.925 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.201 0.799 43 H 0.067 0.933 44 H 0.102 0.898 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 22.474 26.978 11.369 36.907 hybrid contribution -1.615 0.420 -0.316 1.699 sum 20.858 27.398 11.053 36.165 Atomic orbital electron populations 1.20439 0.86468 1.03820 1.03397 1.20513 0.98990 0.86330 1.02430 1.66241 1.06210 1.32254 1.16867 1.28835 0.95044 1.01234 1.02718 1.84013 1.05693 1.03067 1.67129 1.25704 0.95987 1.00169 1.13062 1.19653 1.02083 0.88193 0.96151 1.21714 1.04547 0.91248 0.98938 1.21216 0.76882 0.89044 0.82357 1.90710 1.54195 1.68854 1.32122 1.48270 1.64379 1.15114 1.07074 1.22624 0.98850 1.00594 0.82747 1.23213 0.95912 0.82404 1.02747 1.88090 1.86930 1.26505 1.29317 1.22481 0.95459 0.94640 0.84800 0.92487 1.20760 0.88829 0.93098 0.93813 1.42533 1.34644 1.04657 1.58021 1.19050 1.08561 0.86485 1.22619 0.92341 1.25522 0.99030 1.00174 1.00900 1.69882 1.25549 1.26184 1.41655 0.85340 0.76986 0.80112 0.78885 1.20356 1.22041 1.18057 1.22039 0.95916 0.84028 1.01080 0.90425 0.90569 0.89732 0.75726 0.90394 0.89597 0.86423 0.86332 0.85297 0.89121 0.85288 0.92548 0.94788 0.93547 0.79921 0.93269 0.89767 0.88947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 9.82 71.24 0.70 -0.33 16 2 C 0.05 0.76 6.74 41.52 0.28 1.04 16 3 N -0.50 -8.37 10.53 -191.55 -2.02 -10.39 16 4 C 0.02 0.21 12.23 130.66 1.60 1.80 16 5 S 0.15 1.47 23.22 -56.49 -1.31 0.16 16 6 C -0.23 -3.04 5.84 24.64 0.14 -2.90 16 7 C -0.02 -0.28 4.44 29.85 0.13 -0.15 16 8 C -0.12 -1.41 4.06 29.85 0.12 -1.29 16 9 C 0.51 10.26 7.71 87.65 0.68 10.93 16 10 O -0.58 -16.46 15.45 -3.03 -0.05 -16.51 16 11 N -0.61 -12.00 3.03 -818.22 -2.48 -14.48 16 12 C 0.07 0.94 6.51 86.22 0.56 1.51 16 13 C 0.03 0.61 6.97 71.94 0.50 1.11 16 14 O -0.39 -11.41 10.15 -148.98 -1.51 -12.92 16 15 C 0.09 2.56 2.86 30.68 0.09 2.65 16 16 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 17 C 0.16 6.26 5.96 86.38 0.51 6.78 16 18 N -0.75 -36.53 5.30 -343.46 -1.82 -38.35 16 19 C -0.24 -13.87 10.47 84.03 0.88 -12.99 16 20 H 0.06 3.72 8.06 -2.91 -0.02 3.70 16 21 C -0.06 -3.91 5.50 84.86 0.47 -3.44 16 22 N -0.98 -63.89 13.97 21.65 0.30 -63.59 16 23 Si 0.96 46.62 27.74 68.60 1.90 48.52 16 24 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 25 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 26 H -0.26 -11.32 6.52 99.48 0.65 -10.67 16 27 C 0.09 2.33 5.93 86.34 0.51 2.84 16 28 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.08 0.94 8.14 -2.39 -0.02 0.93 16 30 H 0.08 0.87 7.18 -2.39 -0.02 0.85 16 31 H 0.23 0.87 8.06 -2.91 -0.02 0.85 16 32 H 0.08 1.20 8.10 -2.39 -0.02 1.18 16 33 H 0.09 1.34 7.39 -2.39 -0.02 1.32 16 34 H 0.12 0.91 7.48 -2.39 -0.02 0.89 16 35 H 0.12 0.86 8.03 -2.38 -0.02 0.84 16 36 H 0.13 0.71 6.05 -2.38 -0.01 0.69 16 37 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.13 1.69 8.14 -2.38 -0.02 1.67 16 39 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.37 17.27 5.41 -92.71 -0.50 16.77 16 43 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 44 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.09 2.53 7.08 -2.39 -0.02 2.51 16 Total: -1.00 -80.18 379.57 0.64 -79.53 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.45 Total: 20.46 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 7.17 Total: 7.56 kcal Atomic # 7 Polarization: -120.79 SS G_CDS: -6.01 Total: -126.80 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -1.56 Total: -29.43 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 1.90 Total: 48.52 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -1.31 Total: 0.16 kcal Total: -80.18 0.64 -79.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733745526.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.592 kcal (2) G-P(sol) polarization free energy of solvation -80.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds