Wall clock time and date at job start Tue Mar 31 2020 22:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30172 * 126.80241 * 2 1 4 4 O 1.20922 * 111.60933 * 179.97438 * 3 2 1 5 5 C 1.34044 * 111.56316 * 0.02562 * 4 3 2 6 6 C 1.35448 * 106.44500 * 0.02562 * 5 4 3 7 7 C 1.50701 * 128.00287 * 179.97438 * 6 5 4 8 8 N 1.46903 * 109.47101 * 260.02156 * 7 6 5 9 9 C 1.47479 * 110.99851 * 74.03492 * 8 7 6 10 10 C 1.53509 * 87.93315 * 138.69891 * 9 8 7 11 11 C 1.52995 * 114.34374 * 220.31093 * 10 9 8 12 12 H 1.09004 * 109.46978 * 33.92995 * 11 10 9 13 13 C 1.53006 * 109.47206 * 153.92697 * 11 10 9 14 14 N 1.46495 * 109.47553 * 273.92692 * 11 10 9 15 15 C 1.34777 * 120.00453 * 154.99704 * 14 11 10 16 16 O 1.21282 * 119.99544 * 0.02562 * 15 14 11 17 17 C 1.50703 * 120.00505 * 180.02562 * 15 14 11 18 18 S 1.80996 * 109.47189 * 180.02562 * 17 15 14 19 19 C 1.76203 * 99.99847 * 179.97438 * 18 17 15 20 20 H 1.08004 * 119.99772 * 0.02562 * 19 18 17 21 21 C 1.38799 * 120.00145 * 179.97438 * 19 18 17 22 22 N 1.31622 * 120.00225 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99902 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46820 * 90.00133 * 23 21 19 25 25 H 1.48493 * 109.47137 * 210.00111 * 23 21 19 26 26 H 1.48500 * 109.47001 * 330.00289 * 23 21 19 27 27 C 1.47487 * 110.99644 * 170.00278 * 8 7 6 28 28 H 1.08999 * 109.47171 * 270.04835 * 1 2 3 29 29 H 1.08999 * 109.47090 * 30.05198 * 1 2 3 30 30 H 1.09001 * 109.47224 * 150.05456 * 1 2 3 31 31 H 1.08003 * 126.77431 * 179.97438 * 5 4 3 32 32 H 1.08996 * 109.47561 * 20.02603 * 7 6 5 33 33 H 1.09004 * 109.47135 * 140.02480 * 7 6 5 34 34 H 1.09000 * 113.47138 * 253.47087 * 9 8 7 35 35 H 1.09001 * 113.47520 * 23.93004 * 9 8 7 36 36 H 1.09002 * 114.16782 * 87.62206 * 10 9 8 37 37 H 1.09005 * 109.46491 * 300.00179 * 13 11 10 38 38 H 1.08997 * 109.47064 * 59.99898 * 13 11 10 39 39 H 1.08999 * 109.46923 * 180.02562 * 13 11 10 40 40 H 0.97001 * 120.00220 * 335.00457 * 14 11 10 41 41 H 1.09004 * 109.46744 * 300.00530 * 17 15 14 42 42 H 1.08998 * 109.46988 * 60.00185 * 17 15 14 43 43 H 0.97004 * 120.00215 * 179.97438 * 22 21 19 44 44 H 1.09005 * 113.47605 * 336.06267 * 27 8 7 45 45 H 1.08995 * 113.47378 * 106.47205 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7254 0.0005 5 6 3.6025 -0.6068 0.0004 6 6 2.3540 -1.1320 -0.0009 7 6 1.9592 -2.5864 -0.0021 8 7 1.6003 -2.9952 -1.3667 9 6 2.8020 -3.1333 -2.2103 10 6 2.1732 -4.4028 -2.8015 11 6 3.1602 -5.5503 -3.0249 12 1 3.9210 -5.5322 -2.2445 13 6 2.4114 -6.8837 -2.9765 14 7 3.7996 -5.3966 -4.3339 15 6 5.0130 -5.9384 -4.5590 16 8 5.5753 -6.5536 -3.6779 17 6 5.6711 -5.7799 -5.9055 18 16 7.2780 -6.6128 -5.8935 19 6 7.8083 -6.2783 -7.5402 20 1 7.1774 -5.7070 -8.2051 21 6 9.0372 -6.7480 -7.9825 22 7 9.4336 -6.4977 -9.2124 23 14 10.1293 -7.7343 -6.8317 24 1 9.8096 -9.1785 -6.9627 25 1 11.5535 -7.5084 -7.1861 26 1 9.8927 -7.2999 -5.4315 27 6 1.4387 -4.4586 -1.4547 28 1 -0.3633 0.0009 1.0276 29 1 -0.3633 0.8895 -0.5146 30 1 -0.3634 -0.8905 -0.5130 31 1 4.5340 -1.1534 0.0003 32 1 2.7954 -3.1902 0.3500 33 1 1.1034 -2.7311 0.6574 34 1 2.9183 -2.3279 -2.9355 35 1 3.7122 -3.3239 -1.6416 36 1 1.5229 -4.2217 -3.6574 37 1 1.9356 -6.9980 -2.0024 38 1 1.6506 -6.9017 -3.7568 39 1 3.1147 -7.7012 -3.1352 40 1 3.3498 -4.9049 -5.0388 41 1 5.0379 -6.2236 -6.6738 42 1 5.8123 -4.7202 -6.1183 43 1 10.2926 -6.8257 -9.5214 44 1 1.9851 -5.0029 -0.6844 45 1 0.3995 -4.7764 -1.5385 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734109731.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:34 Heat of formation + Delta-G solvation = 56.136066 kcal Electronic energy + Delta-G solvation = -26277.429081 eV Core-core repulsion = 22425.706409 eV Total energy + Delta-G solvation = -3851.722672 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.24722 -40.94459 -39.18370 -35.94626 -34.98323 -32.88540 -32.45547 -31.53695 -29.64549 -28.94484 -28.61023 -26.35299 -25.63015 -25.45688 -22.78343 -21.69029 -21.37032 -20.55267 -19.89064 -17.97797 -17.87828 -17.70495 -16.75731 -16.58803 -16.05900 -15.67999 -15.17638 -15.09215 -14.92867 -14.39534 -14.25463 -13.86355 -13.68812 -13.50008 -13.35972 -13.20730 -13.05612 -12.87070 -12.81005 -12.79629 -12.18046 -12.07976 -11.95311 -11.57350 -11.32328 -11.27024 -11.08535 -11.02613 -10.86644 -10.60955 -10.18359 -9.90123 -9.85851 -9.54219 -9.40081 -9.03422 -8.97533 -8.52351 -6.93790 -6.30398 -4.02334 1.14246 1.83618 2.73060 2.91408 2.93685 3.25626 3.31794 3.48386 3.54458 3.60343 3.83999 4.00648 4.15694 4.29950 4.31376 4.36885 4.60926 4.69575 4.82971 4.84202 4.91636 5.00884 5.06448 5.08595 5.10233 5.14588 5.18172 5.18811 5.26087 5.32471 5.37055 5.43397 5.49177 5.52225 5.67825 5.74388 5.75470 5.80603 5.92362 5.99696 6.10403 6.50423 6.56030 7.58458 7.92611 7.95006 8.40284 8.46211 9.15679 10.78818 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016151 B = 0.002111 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.195254 B =13258.242029 C =14276.573671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.034 3.966 3 N -0.370 5.370 4 O 0.098 5.902 5 C -0.051 4.051 6 C -0.195 4.195 7 C 0.096 3.904 8 N -0.467 5.467 9 C 0.005 3.995 10 C -0.121 4.121 11 C 0.155 3.845 12 H 0.086 0.914 13 C -0.163 4.163 14 N -0.731 5.731 15 C 0.533 3.467 16 O -0.521 6.521 17 C -0.125 4.125 18 S -0.142 6.142 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.009 3.991 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.214 0.786 32 H 0.058 0.942 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.108 0.892 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.399 0.601 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.271 0.729 44 H 0.075 0.925 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.476 8.339 19.543 29.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.125 4.125 3 N -0.076 5.076 4 O 0.034 5.966 5 C -0.133 4.133 6 C -0.199 4.199 7 C -0.032 4.032 8 N -0.189 5.189 9 C -0.124 4.124 10 C -0.140 4.140 11 C 0.050 3.950 12 H 0.105 0.895 13 C -0.221 4.221 14 N -0.385 5.385 15 C 0.319 3.681 16 O -0.395 6.395 17 C -0.275 4.275 18 S 0.084 5.916 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.114 4.114 22 N -0.516 5.516 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.120 4.120 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.231 0.769 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.126 0.874 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.233 0.767 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.093 0.907 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -20.151 9.098 20.728 30.306 hybrid contribution 0.469 -0.799 -0.877 1.275 sum -19.682 8.299 19.851 29.160 Atomic orbital electron populations 1.20173 0.85912 1.04201 1.03045 1.23487 0.99067 0.88114 1.01864 1.73864 0.89452 1.24292 1.19989 1.84840 1.21581 1.22849 1.67330 1.25866 1.00718 0.83858 1.02859 1.21028 0.92193 0.97111 1.09617 1.20861 1.00796 0.88945 0.92599 1.69027 1.27420 1.14220 1.08189 1.23908 0.93148 0.98073 0.97276 1.23007 0.97785 0.94728 0.98503 1.20847 0.93925 0.93728 0.86522 0.89547 1.22160 1.00656 0.97454 1.01861 1.46025 1.19744 1.57994 1.14749 1.20276 0.80319 0.77929 0.89618 1.90691 1.63286 1.39891 1.45650 1.23286 1.02144 1.05595 0.96507 1.84768 1.14820 1.71786 1.20224 1.22315 1.07765 1.41140 0.95681 0.89390 1.24720 0.96747 0.94967 0.94925 1.69935 1.21385 1.44508 1.15819 0.86731 0.80326 0.81404 0.83357 1.19218 1.19950 1.15944 1.23822 1.02046 0.89591 0.96511 0.90498 0.90692 0.89329 0.76927 0.92398 0.89054 0.89588 0.90909 0.87373 0.91875 0.92324 0.91634 0.76656 0.88528 0.88497 0.91931 0.90714 0.89079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.39 36.01 0.37 -0.13 16 2 C 0.03 0.32 7.33 -82.10 -0.60 -0.28 16 3 N -0.37 -4.13 12.07 33.42 0.40 -3.73 16 4 O 0.10 0.98 11.20 17.16 0.19 1.17 16 5 C -0.05 -0.38 12.26 29.74 0.36 -0.01 16 6 C -0.20 -1.54 5.47 -104.42 -0.57 -2.11 16 7 C 0.10 0.60 5.32 -4.97 -0.03 0.58 16 8 N -0.47 -3.23 6.40 -246.07 -1.58 -4.81 16 9 C 0.00 0.04 6.88 -7.55 -0.05 -0.02 16 10 C -0.12 -0.83 3.63 -90.09 -0.33 -1.15 16 11 C 0.16 1.46 2.47 -67.93 -0.17 1.29 16 12 H 0.09 0.97 7.35 -51.93 -0.38 0.59 16 13 C -0.16 -1.47 9.29 37.16 0.35 -1.12 16 14 N -0.73 -8.28 5.08 -53.81 -0.27 -8.56 16 15 C 0.53 8.81 7.81 -10.98 -0.09 8.73 16 16 O -0.52 -10.54 15.52 5.56 0.09 -10.46 16 17 C -0.12 -2.32 6.16 36.01 0.22 -2.10 16 18 S -0.14 -3.53 18.55 -107.50 -1.99 -5.53 16 19 C -0.52 -14.86 10.04 30.94 0.31 -14.55 16 20 H 0.09 2.62 8.03 -52.48 -0.42 2.19 16 21 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 22 N -0.88 -26.39 13.97 55.49 0.78 -25.61 16 23 Si 0.86 21.58 27.74 -169.99 -4.72 16.86 16 24 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 26 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 27 C 0.01 0.05 6.36 -7.54 -0.05 0.01 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.21 0.88 8.06 -52.48 -0.42 0.46 16 32 H 0.06 0.31 7.56 -51.93 -0.39 -0.08 16 33 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.55 7.51 -51.93 -0.39 0.16 16 36 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.45 7.48 -51.93 -0.39 0.06 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.40 3.53 8.60 -40.82 -0.35 3.18 16 41 H 0.10 1.68 8.14 -51.91 -0.42 1.26 16 42 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.07 0.39 7.73 -51.93 -0.40 -0.01 16 45 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 390.59 15.07 5.89 5.89 Total: -1.00 -34.93 390.59 -8.53 -43.46 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -6.96 Total: -0.47 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -0.36 Total: -8.21 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: -0.67 Total: -42.71 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.28 Total: -9.29 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.72 Total: 16.86 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.93 -8.53 -43.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734109731.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.597 kcal (2) G-P(sol) polarization free energy of solvation -34.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds