Wall clock time and date at job start Tue Mar 31 2020 22:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 110.36584 * 2 1 4 4 C 1.54381 * 110.32169 * 237.81916 * 2 1 3 5 5 N 1.48561 * 104.59318 * 264.95430 * 4 2 1 6 6 C 1.46901 * 111.00284 * 200.96658 * 5 4 2 7 7 C 1.50697 * 109.47373 * 190.00023 * 6 5 4 8 8 C 1.41386 * 126.80005 * 94.70310 * 7 6 5 9 9 C 1.35452 * 103.98162 * 179.89161 * 8 7 6 10 10 O 1.34044 * 106.44649 * 0.36610 * 9 8 7 11 11 N 1.20918 * 111.56442 * 359.75564 * 10 9 8 12 12 C 1.48567 * 104.22184 * 320.51885 * 5 4 2 13 13 C 1.54255 * 110.32287 * 122.17980 * 2 1 3 14 14 H 1.08991 * 110.32664 * 359.89777 * 13 2 1 15 15 N 1.46504 * 110.32195 * 237.79045 * 13 2 1 16 16 C 1.34775 * 119.99561 * 154.99898 * 15 13 2 17 17 O 1.21282 * 120.00577 * 0.02562 * 16 15 13 18 18 C 1.50703 * 119.99768 * 179.97438 * 16 15 13 19 19 S 1.81002 * 109.47349 * 180.02562 * 18 16 15 20 20 C 1.76199 * 100.00182 * 180.02562 * 19 18 16 21 21 H 1.07999 * 119.99976 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99949 * 179.97438 * 20 19 18 23 23 N 1.31630 * 119.99849 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00065 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46819 * 59.99977 * 24 22 20 26 26 H 1.48494 * 109.47285 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47086 * 300.00273 * 24 22 20 28 28 H 1.09000 * 109.47367 * 297.81920 * 1 2 3 29 29 H 1.09000 * 109.47367 * 57.82138 * 1 2 3 30 30 H 1.08998 * 109.47227 * 177.81829 * 1 2 3 31 31 H 1.09000 * 109.46750 * 182.18378 * 3 2 1 32 32 H 1.09005 * 109.46760 * 302.17914 * 3 2 1 33 33 H 1.08996 * 109.47146 * 62.18173 * 3 2 1 34 34 H 1.08991 * 110.41648 * 23.73446 * 4 2 1 35 35 H 1.08999 * 110.41097 * 146.06458 * 4 2 1 36 36 H 1.09010 * 109.46411 * 309.99871 * 6 5 4 37 37 H 1.08997 * 109.47257 * 69.99259 * 6 5 4 38 38 H 1.07998 * 128.00874 * 0.02917 * 8 7 6 39 39 H 1.07995 * 126.77514 * 180.10116 * 9 8 7 40 40 H 1.08997 * 110.41219 * 280.70116 * 12 5 4 41 41 H 1.08997 * 110.40984 * 158.26216 * 12 5 4 42 42 H 0.96993 * 120.00065 * 335.00157 * 15 13 2 43 43 H 1.09005 * 109.46867 * 60.00428 * 18 16 15 44 44 H 1.09000 * 109.47235 * 300.00468 * 18 16 15 45 45 H 0.97005 * 119.99878 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0625 1.4344 0.0000 4 6 2.0661 -0.7710 -1.2253 5 7 2.3147 -2.1467 -0.7225 6 6 3.2650 -2.8595 -1.5867 7 6 3.3059 -4.3143 -1.1958 8 6 2.5613 -5.3679 -1.7742 9 6 2.9532 -6.4641 -1.0817 10 8 3.8472 -6.0417 -0.1767 11 7 4.0293 -4.8489 -0.2551 12 6 2.8806 -1.9421 0.6358 13 6 2.0657 -0.7704 1.2243 14 1 1.2388 -1.1470 1.8262 15 7 2.9291 0.0948 2.0320 16 6 3.0957 -0.1567 3.3455 17 8 2.5313 -1.0995 3.8589 18 6 3.9843 0.7329 4.1762 19 16 4.0034 0.1394 5.8861 20 6 5.0848 1.3272 6.6103 21 1 5.5071 2.1140 6.0029 22 6 5.3930 1.2522 7.9615 23 7 4.8779 0.2934 8.7019 24 14 6.5400 2.5110 8.7292 25 1 5.9630 3.8698 8.5677 26 1 6.7062 2.2129 10.1744 27 1 7.8622 2.4514 8.0557 28 1 -0.3634 0.4796 0.9089 29 1 -0.3634 0.5473 -0.8698 30 1 -0.3633 -1.0269 -0.0391 31 1 3.1516 1.4176 -0.0392 32 1 1.6758 1.9655 -0.8699 33 1 1.7393 1.9419 0.9089 34 1 1.3213 -0.7859 -2.0209 35 1 2.9930 -0.3215 -1.5816 36 1 2.9477 -2.7712 -2.6259 37 1 4.2577 -2.4243 -1.4718 38 1 1.8474 -5.3121 -2.5826 39 1 2.6096 -7.4776 -1.2270 40 1 3.9360 -1.6771 0.5720 41 1 2.7490 -2.8387 1.2415 42 1 3.3808 0.8486 1.6214 43 1 3.6031 1.7538 4.1499 44 1 4.9971 0.7128 3.7737 45 1 5.0936 0.2408 9.6462 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734144758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:09 Heat of formation + Delta-G solvation = 38.341024 kcal Electronic energy + Delta-G solvation = -27038.600960 eV Core-core repulsion = 23186.106637 eV Total energy + Delta-G solvation = -3852.494323 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.10916 -40.51403 -38.46735 -35.90130 -33.82424 -33.14256 -32.40865 -31.81171 -30.11109 -28.56286 -27.58845 -27.10438 -25.47041 -24.55848 -23.36899 -22.01357 -20.99444 -20.24452 -19.36573 -17.95744 -17.80974 -17.71550 -16.51598 -16.42719 -15.78348 -15.37897 -15.09192 -14.79129 -14.65264 -14.54232 -14.06731 -13.92166 -13.64047 -13.57309 -13.30571 -13.04407 -12.75219 -12.55773 -12.38305 -12.21547 -12.10637 -11.79296 -11.68010 -11.32614 -11.16214 -11.08093 -11.02454 -11.01919 -10.76853 -10.70347 -10.37717 -9.85276 -9.80430 -9.37801 -9.04618 -8.93154 -8.78295 -8.21428 -6.47592 -6.19532 -3.89984 1.32498 1.97825 3.02673 3.08175 3.11015 3.24633 3.28292 3.31404 3.61066 3.81734 4.07845 4.12904 4.22310 4.26032 4.41218 4.61700 4.86044 4.92257 4.99987 5.02496 5.11280 5.14205 5.15410 5.21021 5.23973 5.29627 5.33615 5.42658 5.46501 5.60966 5.65065 5.68623 5.74714 5.77095 5.88972 5.93438 5.96498 5.99738 6.10146 6.14886 6.37675 6.60373 6.74708 7.60882 7.72459 8.09554 8.36789 8.64526 9.25430 10.87830 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013045 B = 0.002582 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.902682 B =10841.068449 C =12336.384776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.074 4.074 3 C -0.146 4.146 4 C 0.042 3.958 5 N -0.503 5.503 6 C 0.123 3.877 7 C 0.022 3.978 8 C -0.221 4.221 9 C -0.064 4.064 10 O 0.103 5.897 11 N -0.355 5.355 12 C 0.026 3.974 13 C 0.152 3.848 14 H 0.102 0.898 15 N -0.734 5.734 16 C 0.531 3.469 17 O -0.514 6.514 18 C -0.153 4.153 19 S -0.058 6.058 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.049 0.951 36 H 0.097 0.903 37 H 0.056 0.944 38 H 0.170 0.830 39 H 0.215 0.785 40 H 0.052 0.948 41 H 0.087 0.913 42 H 0.399 0.601 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.836 -5.327 -27.779 29.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.075 4.075 3 C -0.204 4.204 4 C -0.086 4.086 5 N -0.227 5.227 6 C -0.006 4.006 7 C -0.138 4.138 8 C -0.242 4.242 9 C -0.146 4.146 10 O 0.035 5.965 11 N -0.057 5.057 12 C -0.103 4.103 13 C 0.046 3.954 14 H 0.120 0.880 15 N -0.391 5.391 16 C 0.317 3.683 17 O -0.388 6.388 18 C -0.304 4.304 19 S 0.169 5.831 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.200 1.200 26 H -0.208 1.208 27 H -0.200 1.200 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.067 0.933 36 H 0.115 0.885 37 H 0.074 0.926 38 H 0.188 0.812 39 H 0.232 0.768 40 H 0.070 0.930 41 H 0.106 0.894 42 H 0.236 0.764 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.378 -6.818 -25.839 27.723 hybrid contribution 1.767 2.425 -1.033 3.173 sum -5.610 -4.393 -26.873 27.801 Atomic orbital electron populations 1.21815 0.92750 1.02605 1.01911 1.21535 0.97055 0.95118 0.93837 1.21891 1.00573 0.95001 1.02911 1.23252 1.00208 0.87886 0.97211 1.65350 1.40124 1.14989 1.02284 1.20463 0.95840 0.86582 0.97676 1.23383 0.96730 0.98333 0.95309 1.22668 1.04917 0.91316 1.05330 1.26026 0.94568 1.01761 0.92196 1.84877 1.47588 1.17808 1.46202 1.73917 1.21578 0.91222 1.18991 1.23602 0.97192 0.99709 0.89776 1.21634 0.93273 0.89233 0.91290 0.88048 1.46326 1.50693 1.32823 1.09258 1.20357 0.81293 0.85167 0.81464 1.90706 1.47081 1.29597 1.71382 1.23533 1.00978 1.01934 1.03960 1.85414 1.62982 1.40389 0.94364 1.22828 1.33028 1.15568 0.97028 0.91025 1.24991 0.96282 0.96241 0.96064 1.70011 1.42111 1.31010 1.07137 0.86229 0.80490 0.80773 0.78029 1.19954 1.20800 1.19956 0.92241 0.92414 0.91619 0.92447 0.91849 0.91270 0.89485 0.93314 0.88460 0.92593 0.81237 0.76833 0.92999 0.89441 0.76425 0.89285 0.89355 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 8.23 37.16 0.31 -0.83 16 2 C -0.07 -0.67 1.03 -153.13 -0.16 -0.83 16 3 C -0.15 -1.12 7.11 37.16 0.26 -0.86 16 4 C 0.04 0.34 5.55 -2.18 -0.01 0.33 16 5 N -0.50 -5.16 5.33 -231.41 -1.23 -6.39 16 6 C 0.12 1.13 5.43 -4.98 -0.03 1.11 16 7 C 0.02 0.24 6.50 -82.10 -0.53 -0.30 16 8 C -0.22 -1.76 11.12 -39.38 -0.44 -2.20 16 9 C -0.06 -0.47 12.30 29.74 0.37 -0.10 16 10 O 0.10 1.17 11.20 17.17 0.19 1.36 16 11 N -0.35 -4.69 12.07 33.42 0.40 -4.28 16 12 C 0.03 0.34 5.83 -2.18 -0.01 0.33 16 13 C 0.15 1.94 3.04 -66.55 -0.20 1.74 16 14 H 0.10 1.55 7.13 -51.93 -0.37 1.18 16 15 N -0.73 -10.22 4.52 -52.47 -0.24 -10.46 16 16 C 0.53 10.19 7.85 -10.98 -0.09 10.10 16 17 O -0.51 -12.00 15.51 5.56 0.09 -11.92 16 18 C -0.15 -3.16 6.16 36.01 0.22 -2.94 16 19 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 20 C -0.54 -15.49 9.50 30.94 0.29 -15.19 16 21 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 22 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 23 N -0.87 -26.51 13.22 55.49 0.73 -25.77 16 24 Si 0.92 21.65 29.55 -169.99 -5.02 16.63 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.41 6.93 -51.93 -0.36 0.06 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.60 7.76 -51.93 -0.40 0.19 16 34 H 0.09 0.58 7.86 -51.93 -0.41 0.17 16 35 H 0.05 0.36 7.69 -51.93 -0.40 -0.04 16 36 H 0.10 0.64 8.08 -51.92 -0.42 0.22 16 37 H 0.06 0.54 7.77 -51.93 -0.40 0.14 16 38 H 0.17 0.89 8.06 -52.49 -0.42 0.46 16 39 H 0.22 0.58 8.06 -52.49 -0.42 0.16 16 40 H 0.05 0.71 7.66 -51.93 -0.40 0.32 16 41 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.40 4.46 5.91 -40.82 -0.24 4.21 16 43 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 44 H 0.09 1.70 8.14 -51.92 -0.42 1.27 16 45 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 384.43 15.07 5.79 5.79 Total: -1.00 -36.34 384.43 -8.36 -44.70 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.75 Total: 1.77 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: -0.11 Total: -7.62 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: -0.33 Total: -46.91 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.28 Total: -10.55 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.34 -8.36 -44.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734144758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.040 kcal (2) G-P(sol) polarization free energy of solvation -36.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds