Wall clock time and date at job start Tue Mar 31 2020 22:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 110.36584 * 2 1 4 4 C 1.54381 * 110.32169 * 237.81916 * 2 1 3 5 5 N 1.48561 * 104.59318 * 264.95430 * 4 2 1 6 6 C 1.46901 * 111.00284 * 200.96658 * 5 4 2 7 7 C 1.50697 * 109.47373 * 190.00023 * 6 5 4 8 8 C 1.41386 * 126.80005 * 94.70310 * 7 6 5 9 9 C 1.35452 * 103.98162 * 179.89161 * 8 7 6 10 10 O 1.34044 * 106.44649 * 0.36610 * 9 8 7 11 11 N 1.20918 * 111.56442 * 359.75564 * 10 9 8 12 12 C 1.48567 * 104.22184 * 320.51885 * 5 4 2 13 13 C 1.54255 * 110.32287 * 122.17980 * 2 1 3 14 14 H 1.08991 * 110.32664 * 359.89777 * 13 2 1 15 15 N 1.46504 * 110.32195 * 237.79045 * 13 2 1 16 16 C 1.34775 * 119.99561 * 154.99898 * 15 13 2 17 17 O 1.21282 * 120.00577 * 0.02562 * 16 15 13 18 18 C 1.50703 * 119.99768 * 179.97438 * 16 15 13 19 19 S 1.81002 * 109.47349 * 180.02562 * 18 16 15 20 20 C 1.76199 * 100.00182 * 180.02562 * 19 18 16 21 21 H 1.07999 * 119.99976 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99949 * 179.97438 * 20 19 18 23 23 N 1.31630 * 119.99849 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00065 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46819 * 59.99977 * 24 22 20 26 26 H 1.48494 * 109.47285 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47086 * 300.00273 * 24 22 20 28 28 H 1.09000 * 109.47367 * 297.81920 * 1 2 3 29 29 H 1.09000 * 109.47367 * 57.82138 * 1 2 3 30 30 H 1.08998 * 109.47227 * 177.81829 * 1 2 3 31 31 H 1.09000 * 109.46750 * 182.18378 * 3 2 1 32 32 H 1.09005 * 109.46760 * 302.17914 * 3 2 1 33 33 H 1.08996 * 109.47146 * 62.18173 * 3 2 1 34 34 H 1.08991 * 110.41648 * 23.73446 * 4 2 1 35 35 H 1.08999 * 110.41097 * 146.06458 * 4 2 1 36 36 H 1.09010 * 109.46411 * 309.99871 * 6 5 4 37 37 H 1.08997 * 109.47257 * 69.99259 * 6 5 4 38 38 H 1.07998 * 128.00874 * 0.02917 * 8 7 6 39 39 H 1.07995 * 126.77514 * 180.10116 * 9 8 7 40 40 H 1.08997 * 110.41219 * 280.70116 * 12 5 4 41 41 H 1.08997 * 110.40984 * 158.26216 * 12 5 4 42 42 H 0.96993 * 120.00065 * 335.00157 * 15 13 2 43 43 H 1.09005 * 109.46867 * 60.00428 * 18 16 15 44 44 H 1.09000 * 109.47235 * 300.00468 * 18 16 15 45 45 H 0.97005 * 119.99878 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0625 1.4344 0.0000 4 6 2.0661 -0.7710 -1.2253 5 7 2.3147 -2.1467 -0.7225 6 6 3.2650 -2.8595 -1.5867 7 6 3.3059 -4.3143 -1.1958 8 6 2.5613 -5.3679 -1.7742 9 6 2.9532 -6.4641 -1.0817 10 8 3.8472 -6.0417 -0.1767 11 7 4.0293 -4.8489 -0.2551 12 6 2.8806 -1.9421 0.6358 13 6 2.0657 -0.7704 1.2243 14 1 1.2388 -1.1470 1.8262 15 7 2.9291 0.0948 2.0320 16 6 3.0957 -0.1567 3.3455 17 8 2.5313 -1.0995 3.8589 18 6 3.9843 0.7329 4.1762 19 16 4.0034 0.1394 5.8861 20 6 5.0848 1.3272 6.6103 21 1 5.5071 2.1140 6.0029 22 6 5.3930 1.2522 7.9615 23 7 4.8779 0.2934 8.7019 24 14 6.5400 2.5110 8.7292 25 1 5.9630 3.8698 8.5677 26 1 6.7062 2.2129 10.1744 27 1 7.8622 2.4514 8.0557 28 1 -0.3634 0.4796 0.9089 29 1 -0.3634 0.5473 -0.8698 30 1 -0.3633 -1.0269 -0.0391 31 1 3.1516 1.4176 -0.0392 32 1 1.6758 1.9655 -0.8699 33 1 1.7393 1.9419 0.9089 34 1 1.3213 -0.7859 -2.0209 35 1 2.9930 -0.3215 -1.5816 36 1 2.9477 -2.7712 -2.6259 37 1 4.2577 -2.4243 -1.4718 38 1 1.8474 -5.3121 -2.5826 39 1 2.6096 -7.4776 -1.2270 40 1 3.9360 -1.6771 0.5720 41 1 2.7490 -2.8387 1.2415 42 1 3.3808 0.8486 1.6214 43 1 3.6031 1.7538 4.1499 44 1 4.9971 0.7128 3.7737 45 1 5.0936 0.2408 9.6462 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734144758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:08 Heat of formation + Delta-G solvation = 11.256460 kcal Electronic energy + Delta-G solvation = -27039.775434 eV Core-core repulsion = 23186.106637 eV Total energy + Delta-G solvation = -3853.668798 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.86455 -41.57886 -39.82316 -36.77237 -34.89498 -34.60057 -34.05922 -32.52421 -31.49673 -29.69819 -28.27323 -28.02143 -27.62563 -25.42789 -24.10207 -22.99114 -21.75387 -21.61280 -20.33981 -19.74554 -18.62097 -18.55416 -17.99916 -17.53096 -16.89733 -16.68262 -16.57855 -16.28031 -15.89620 -15.52587 -15.25754 -15.00180 -14.80166 -14.48074 -14.33982 -14.11469 -13.83274 -13.79978 -13.50783 -13.19462 -13.07944 -12.93845 -12.88324 -12.67372 -12.64601 -12.53298 -12.11004 -11.92096 -11.88441 -11.75728 -11.56000 -11.14586 -11.11868 -11.00633 -10.54068 -10.30700 -10.19366 -9.64941 -8.69665 -8.36073 -6.15003 0.65766 1.23257 1.30033 1.42694 1.44575 1.54346 1.54929 2.17604 2.25953 2.51201 2.97804 2.99114 3.24186 3.32888 3.37718 3.48557 3.65905 3.84135 3.94135 4.10149 4.15206 4.24270 4.26160 4.30160 4.36402 4.42648 4.44706 4.61587 4.65712 4.68776 4.75592 4.79060 4.83798 4.91059 5.01024 5.02751 5.15103 5.20520 5.29466 5.35987 5.38734 5.39478 5.68651 5.84467 6.17802 6.42806 7.04598 7.18805 7.39451 8.73067 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013045 B = 0.002582 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.902682 B =10841.068449 C =12336.384776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.066 4.066 3 C -0.147 4.147 4 C 0.046 3.954 5 N -0.505 5.505 6 C 0.123 3.877 7 C 0.007 3.993 8 C -0.225 4.225 9 C -0.055 4.055 10 O 0.078 5.922 11 N -0.406 5.406 12 C 0.037 3.963 13 C 0.148 3.852 14 H 0.070 0.930 15 N -0.707 5.707 16 C 0.532 3.468 17 O -0.564 6.564 18 C -0.128 4.128 19 S -0.152 6.152 20 C -0.547 4.547 21 H 0.083 0.917 22 C 0.012 3.988 23 N -0.912 5.912 24 Si 1.000 3.000 25 H -0.260 1.260 26 H -0.278 1.278 27 H -0.262 1.262 28 H 0.045 0.955 29 H 0.085 0.915 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.058 0.942 34 H 0.114 0.886 35 H 0.065 0.935 36 H 0.133 0.867 37 H 0.048 0.952 38 H 0.201 0.799 39 H 0.259 0.741 40 H 0.043 0.957 41 H 0.044 0.956 42 H 0.416 0.584 43 H 0.113 0.887 44 H 0.107 0.893 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.777 -3.345 -31.194 32.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.067 4.067 3 C -0.204 4.204 4 C -0.081 4.081 5 N -0.230 5.230 6 C -0.006 4.006 7 C -0.152 4.152 8 C -0.246 4.246 9 C -0.136 4.136 10 O 0.013 5.987 11 N -0.113 5.113 12 C -0.092 4.092 13 C 0.042 3.958 14 H 0.088 0.912 15 N -0.363 5.363 16 C 0.318 3.682 17 O -0.442 6.442 18 C -0.280 4.280 19 S 0.075 5.925 20 C -0.695 4.695 21 H 0.102 0.898 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.185 1.185 26 H -0.204 1.204 27 H -0.187 1.187 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.108 0.892 33 H 0.077 0.923 34 H 0.132 0.868 35 H 0.083 0.917 36 H 0.151 0.849 37 H 0.067 0.933 38 H 0.218 0.782 39 H 0.275 0.725 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.257 0.743 43 H 0.131 0.869 44 H 0.125 0.875 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.319 -4.823 -29.321 30.603 hybrid contribution 1.661 1.725 -0.125 2.398 sum -5.658 -3.098 -29.446 30.144 Atomic orbital electron populations 1.21803 0.92223 1.02284 1.02510 1.21544 0.97391 0.95785 0.91956 1.21914 1.01103 0.93711 1.03691 1.23375 1.01650 0.86102 0.96975 1.65316 1.40007 1.16706 1.00957 1.20634 0.95379 0.85560 0.98988 1.23911 0.96650 0.99719 0.94938 1.23084 1.05129 0.90360 1.06048 1.26933 0.92704 1.03613 0.90335 1.84807 1.48926 1.17386 1.47565 1.73920 1.24007 0.92265 1.21122 1.23284 0.96738 0.97764 0.91440 1.21728 0.92067 0.89806 0.92168 0.91169 1.46067 1.49856 1.32965 1.07428 1.20184 0.80764 0.84307 0.82936 1.90697 1.49164 1.31641 1.72714 1.23363 1.02652 1.02855 0.99085 1.85632 1.63698 1.42474 1.00682 1.23170 1.32996 1.15607 0.97711 0.89840 1.26167 0.97993 0.98507 0.96588 1.70187 1.43838 1.33269 1.07538 0.84982 0.78100 0.77867 0.76907 1.18470 1.20351 1.18688 0.93607 0.89627 0.92636 0.91685 0.89233 0.92265 0.86837 0.91684 0.84943 0.93339 0.78204 0.72549 0.93924 0.93692 0.74331 0.86923 0.87465 0.91966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 8.23 71.98 0.59 -1.39 16 2 C -0.07 -1.05 1.03 -51.29 -0.05 -1.10 16 3 C -0.15 -1.77 7.11 71.98 0.51 -1.25 16 4 C 0.05 0.59 5.55 86.45 0.48 1.07 16 5 N -0.50 -9.78 5.33 -886.03 -4.72 -14.50 16 6 C 0.12 2.08 5.43 85.56 0.46 2.54 16 7 C 0.01 0.14 6.50 43.58 0.28 0.42 16 8 C -0.22 -3.22 11.12 22.40 0.25 -2.97 16 9 C -0.06 -0.75 12.30 67.18 0.83 0.08 16 10 O 0.08 1.84 11.20 71.60 0.80 2.64 16 11 N -0.41 -11.34 12.07 -49.57 -0.60 -11.94 16 12 C 0.04 1.02 5.83 86.45 0.50 1.53 16 13 C 0.15 3.84 3.04 45.88 0.14 3.98 16 14 H 0.07 2.30 7.13 -2.39 -0.02 2.28 16 15 N -0.71 -19.52 4.52 -438.30 -1.98 -21.50 16 16 C 0.53 20.96 7.85 87.66 0.69 21.65 16 17 O -0.56 -27.98 15.51 -3.04 -0.05 -28.03 16 18 C -0.13 -5.31 6.16 71.24 0.44 -4.87 16 19 S -0.15 -8.72 20.57 -56.49 -1.16 -9.89 16 20 C -0.55 -31.89 9.50 67.96 0.65 -31.25 16 21 H 0.08 4.49 7.80 -2.91 -0.02 4.47 16 22 C 0.01 0.70 5.49 84.86 0.47 1.17 16 23 N -0.91 -57.21 13.22 21.65 0.29 -56.93 16 24 Si 1.00 44.28 29.55 68.60 2.03 46.31 16 25 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 26 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 27 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 28 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 0.70 6.93 -2.39 -0.02 0.68 16 32 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.06 0.86 7.76 -2.39 -0.02 0.84 16 34 H 0.11 0.95 7.86 -2.39 -0.02 0.94 16 35 H 0.06 0.68 7.69 -2.39 -0.02 0.66 16 36 H 0.13 1.27 8.08 -2.38 -0.02 1.25 16 37 H 0.05 0.89 7.77 -2.39 -0.02 0.87 16 38 H 0.20 1.43 8.06 -2.91 -0.02 1.41 16 39 H 0.26 0.71 8.06 -2.91 -0.02 0.69 16 40 H 0.04 1.22 7.66 -2.39 -0.02 1.20 16 41 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.42 8.56 5.91 -92.71 -0.55 8.01 16 43 H 0.11 4.12 8.14 -2.39 -0.02 4.10 16 44 H 0.11 4.03 8.14 -2.40 -0.02 4.01 16 45 H 0.27 15.81 8.31 -92.70 -0.77 15.04 16 Total: -1.00 -86.01 384.43 1.29 -84.72 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.45 Total: 19.50 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: 6.24 Total: -10.39 kcal Atomic # 7 Polarization: -97.85 SS G_CDS: -7.01 Total: -104.86 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: 0.75 Total: -25.39 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.16 Total: -9.89 kcal Total: -86.01 1.29 -84.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734144758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.975 kcal (2) G-P(sol) polarization free energy of solvation -86.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds