Wall clock time and date at job start Tue Mar 31 2020 23:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29425 * 124.80398 * 2 1 4 4 C 1.30950 * 117.36293 * 179.72532 * 3 2 1 5 5 C 1.50699 * 122.90434 * 180.35155 * 4 3 2 6 6 C 1.35659 * 114.18727 * 0.53148 * 4 3 2 7 7 C 1.46682 * 126.12679 * 179.78338 * 6 4 3 8 8 O 1.21686 * 120.00045 * 324.31551 * 7 6 4 9 9 N 1.34781 * 120.00044 * 144.31148 * 7 6 4 10 10 C 1.47144 * 120.98152 * 354.23348 * 9 7 6 11 11 C 1.53295 * 108.38540 * 230.54891 * 10 9 7 12 12 O 1.42952 * 109.22562 * 307.70191 * 11 10 9 13 13 C 1.42962 * 114.16952 * 62.57261 * 12 11 10 14 14 H 1.09001 * 109.51149 * 57.34721 * 13 12 11 15 15 C 1.52998 * 109.51441 * 177.49572 * 13 12 11 16 16 H 1.08997 * 109.47245 * 184.74586 * 15 13 12 17 17 C 1.52997 * 109.47258 * 304.74884 * 15 13 12 18 18 N 1.46501 * 109.47188 * 64.75059 * 15 13 12 19 19 C 1.36929 * 120.00336 * 154.99838 * 18 15 13 20 20 H 1.08005 * 120.00088 * 359.97438 * 19 18 15 21 21 C 1.38821 * 120.00062 * 179.97438 * 19 18 15 22 22 N 1.31621 * 119.99918 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99999 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46885 * 59.99751 * 23 21 19 25 25 H 1.48492 * 109.46866 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47082 * 300.00192 * 23 21 19 27 27 C 1.47148 * 120.98146 * 174.24641 * 9 7 6 28 28 S 1.70955 * 124.80271 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47068 * 269.97181 * 1 2 3 30 30 H 1.09002 * 109.46909 * 29.97775 * 1 2 3 31 31 H 1.09009 * 109.47013 * 149.97083 * 1 2 3 32 32 H 1.09000 * 109.47001 * 270.19396 * 5 4 3 33 33 H 1.08999 * 109.47338 * 30.19284 * 5 4 3 34 34 H 1.08996 * 109.47333 * 150.19498 * 5 4 3 35 35 H 1.08998 * 109.68618 * 350.27829 * 10 9 7 36 36 H 1.09001 * 109.68175 * 110.82915 * 10 9 7 37 37 H 1.09004 * 109.50956 * 67.62418 * 11 10 9 38 38 H 1.09003 * 109.51571 * 187.76848 * 11 10 9 39 39 H 1.09009 * 109.47162 * 60.00163 * 17 15 13 40 40 H 1.09006 * 109.46969 * 179.97438 * 17 15 13 41 41 H 1.08994 * 109.47380 * 299.99673 * 17 15 13 42 42 H 0.97006 * 119.99596 * 334.99724 * 18 15 13 43 43 H 0.97001 * 119.99559 * 180.02562 * 22 21 19 44 44 H 1.08996 * 109.68611 * 249.17174 * 27 9 7 45 45 H 1.09000 * 109.68337 * 9.73129 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2458 1.0627 0.0000 4 6 3.5442 0.8931 0.0056 5 6 4.5198 2.0417 0.0140 6 6 3.9351 -0.4059 -0.0008 7 6 5.3189 -0.8926 -0.0013 8 8 6.1778 -0.2837 -0.6115 9 7 5.6390 -2.0142 0.6741 10 6 4.6482 -2.6974 1.5207 11 6 5.2748 -2.9403 2.8984 12 8 6.5322 -3.6002 2.7340 13 6 7.5023 -2.8393 2.0101 14 1 7.6634 -1.8845 2.5106 15 6 8.8197 -3.6151 1.9510 16 1 9.5824 -3.0001 1.4733 17 6 9.2666 -3.9703 3.3705 18 7 8.6284 -4.8442 1.1772 19 6 9.6953 -5.4334 0.5530 20 1 10.6778 -4.9917 0.6307 21 6 9.5140 -6.5985 -0.1798 22 7 8.3165 -7.1365 -0.2749 23 14 10.9695 -7.4026 -1.0308 24 1 11.9929 -7.7703 -0.0195 25 1 10.5141 -8.6241 -1.7419 26 1 11.5586 -6.4521 -2.0080 27 6 6.9897 -2.5914 0.5869 28 16 2.4828 -1.4038 -0.0006 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5143 32 1 4.7572 2.3243 -1.0116 33 1 4.0756 2.8919 0.5316 34 1 5.4322 1.7397 0.5281 35 1 3.7615 -2.0723 1.6256 36 1 4.3743 -3.6508 1.0688 37 1 5.4278 -1.9858 3.4022 38 1 4.6108 -3.5654 3.4954 39 1 8.5039 -4.5854 3.8483 40 1 10.2050 -4.5234 3.3283 41 1 9.4090 -3.0559 3.9462 42 1 7.7459 -5.2408 1.1072 43 1 8.1900 -7.9507 -0.7866 44 1 6.9516 -3.5341 0.0410 45 1 7.6537 -1.8959 0.0736 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734185721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:01:57 Heat of formation + Delta-G solvation = -13.827916 kcal Electronic energy + Delta-G solvation = -27955.039996 eV Core-core repulsion = 24100.283458 eV Total energy + Delta-G solvation = -3854.756538 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.69831 -39.82676 -38.23545 -35.54285 -34.57800 -33.32245 -32.29995 -30.37462 -29.57636 -29.05469 -28.39980 -27.12440 -24.26646 -23.55688 -23.26900 -22.76686 -20.90055 -19.70816 -18.71448 -18.30021 -17.36105 -17.02554 -16.39115 -15.93566 -15.72239 -15.24165 -14.83368 -14.75070 -14.51650 -14.25631 -13.94410 -13.68314 -13.61608 -13.39462 -13.19902 -12.98608 -12.85966 -12.53348 -12.47364 -12.28001 -11.96698 -11.85637 -11.62363 -11.39444 -11.22995 -10.83880 -10.78309 -10.49967 -10.37233 -10.21942 -9.99836 -9.92351 -9.85390 -9.58197 -9.50966 -8.94306 -8.91216 -8.42486 -6.93429 -5.74163 -3.02644 0.04579 0.87201 1.29674 2.24841 2.78124 3.00255 3.45954 3.50654 3.51122 3.67897 3.94101 4.37523 4.56335 4.60696 4.77010 4.84181 4.91279 4.97126 5.01290 5.07823 5.27082 5.36237 5.37917 5.46189 5.49138 5.54185 5.60255 5.64835 5.66189 5.74296 5.83228 5.98486 6.05217 6.21051 6.31186 6.39891 6.51754 6.66746 6.78822 7.14491 7.24277 7.39187 7.43904 7.71976 8.01084 8.44001 9.56245 10.12353 10.49395 11.48031 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.016961 B = 0.002947 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.429938 B = 9499.170887 C = 9704.823986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.047 3.953 3 N -0.478 5.478 4 C 0.141 3.859 5 C -0.080 4.080 6 C -0.296 4.296 7 C 0.596 3.404 8 O -0.521 6.521 9 N -0.605 5.605 10 C 0.060 3.940 11 C 0.052 3.948 12 O -0.357 6.357 13 C 0.078 3.922 14 H 0.056 0.944 15 C 0.183 3.817 16 H 0.061 0.939 17 C -0.159 4.159 18 N -0.718 5.718 19 C -0.239 4.239 20 H 0.070 0.930 21 C -0.011 4.011 22 N -0.931 5.931 23 Si 0.905 3.095 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.286 1.286 27 C 0.088 3.912 28 S 0.181 5.819 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.050 0.950 38 H 0.105 0.895 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.032 0.968 42 H 0.389 0.611 43 H 0.255 0.745 44 H 0.102 0.898 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.798 14.858 5.009 22.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.229 4.229 3 N -0.193 5.193 4 C 0.004 3.996 5 C -0.139 4.139 6 C -0.419 4.419 7 C 0.382 3.618 8 O -0.399 6.399 9 N -0.338 5.338 10 C -0.064 4.064 11 C -0.026 4.026 12 O -0.275 6.275 13 C 0.018 3.982 14 H 0.074 0.926 15 C 0.072 3.928 16 H 0.078 0.922 17 C -0.220 4.220 18 N -0.360 5.360 19 C -0.371 4.371 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.579 5.579 23 Si 0.736 3.264 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.213 1.213 27 C -0.034 4.034 28 S 0.439 5.561 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.068 0.932 38 H 0.123 0.877 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.051 0.949 42 H 0.224 0.776 43 H 0.065 0.935 44 H 0.120 0.880 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -16.662 14.326 4.645 22.460 hybrid contribution 0.838 0.181 -0.596 1.045 sum -15.823 14.508 4.049 21.846 Atomic orbital electron populations 1.20521 0.84732 1.04578 1.04217 1.27515 1.02248 0.92030 1.01060 1.66084 1.04274 1.31514 1.17477 1.20568 0.90014 0.93425 0.95587 1.20457 0.95867 0.93668 1.03891 1.25455 0.98255 0.97254 1.20978 1.16718 0.85420 0.80288 0.79374 1.90830 1.48805 1.56328 1.43887 1.48076 1.13829 1.25489 1.46433 1.22784 0.91879 0.98799 0.92923 1.22842 0.87186 0.98144 0.94441 1.88114 1.21298 1.43082 1.75037 1.22941 0.90380 0.94670 0.90186 0.92599 1.20260 0.90799 0.89329 0.92403 0.92153 1.22326 1.01731 0.99753 0.98142 1.42404 1.09573 1.25519 1.58534 1.19192 0.89220 1.04984 1.23664 0.91238 1.24716 0.96525 0.98345 1.01165 1.69659 1.20382 1.22176 1.45678 0.86299 0.81935 0.78753 0.79375 1.21340 1.21792 1.21301 1.22533 0.81229 1.00806 0.98787 1.84169 0.95481 1.10540 1.65928 0.89128 0.89014 0.89737 0.89636 0.90557 0.90002 0.89465 0.89501 0.93205 0.87697 0.92463 0.92775 0.94861 0.77621 0.93544 0.87972 0.88230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 10.46 36.01 0.38 -0.06 16 2 C 0.05 0.45 7.39 -13.29 -0.10 0.35 16 3 N -0.48 -5.72 10.50 -7.70 -0.08 -5.80 16 4 C 0.14 1.81 6.79 -83.89 -0.57 1.24 16 5 C -0.08 -0.90 9.57 36.00 0.34 -0.56 16 6 C -0.30 -3.95 5.58 -37.10 -0.21 -4.16 16 7 C 0.60 9.47 7.21 -12.85 -0.09 9.38 16 8 O -0.52 -9.68 15.13 5.20 0.08 -9.60 16 9 N -0.60 -9.25 3.02 -173.83 -0.52 -9.77 16 10 C 0.06 0.75 5.72 -3.54 -0.02 0.73 16 11 C 0.05 0.64 6.98 37.31 0.26 0.90 16 12 O -0.36 -5.94 9.24 -35.23 -0.33 -6.27 16 13 C 0.08 1.31 2.57 -26.58 -0.07 1.24 16 14 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 15 C 0.18 3.59 2.80 -67.93 -0.19 3.40 16 16 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 17 C -0.16 -2.93 9.30 37.16 0.35 -2.58 16 18 N -0.72 -17.50 4.24 -53.43 -0.23 -17.72 16 19 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 20 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 21 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 22 N -0.93 -27.73 13.06 55.49 0.72 -27.01 16 23 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 C 0.09 1.54 5.84 -3.54 -0.02 1.52 16 28 S 0.18 1.82 19.87 -107.50 -2.14 -0.32 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.32 8.14 -51.92 -0.42 -0.10 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.99 7.09 -51.93 -0.37 0.62 16 35 H 0.09 0.91 4.52 -34.45 -0.16 0.75 16 36 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.06 1.10 7.57 -51.92 -0.39 0.71 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.39 10.21 7.08 -40.82 -0.29 9.92 16 43 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.10 2.10 6.94 -51.93 -0.36 1.74 16 45 H 0.10 1.83 7.06 -51.93 -0.37 1.46 16 LS Contribution 375.58 15.07 5.66 5.66 Total: -1.00 -32.87 375.58 -8.59 -41.45 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -6.55 Total: 7.74 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -0.18 Total: 4.32 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: -0.11 Total: -60.31 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.25 Total: -15.87 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -2.14 Total: -0.32 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.87 -8.59 -41.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734185721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.627 kcal (2) G-P(sol) polarization free energy of solvation -32.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds