Wall clock time and date at job start Tue Mar 31 2020 22:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.34032 * 126.77671 * 2 1 4 4 N 1.20916 * 111.56844 * 180.02562 * 3 2 1 5 5 C 1.30174 * 111.60336 * 359.74326 * 4 3 2 6 6 C 1.35451 * 126.77664 * 179.97438 * 2 1 3 7 7 C 1.50706 * 128.00522 * 359.96530 * 6 2 1 8 8 N 1.46898 * 109.46877 * 80.00115 * 7 6 2 9 9 C 1.46907 * 110.99938 * 179.97438 * 8 7 6 10 10 H 1.09000 * 110.63594 * 34.29357 * 9 8 7 11 11 C 1.55155 * 110.71871 * 271.15825 * 9 8 7 12 12 C 1.55118 * 101.48260 * 206.26298 * 11 9 8 13 13 N 1.47425 * 104.94540 * 36.77929 * 12 11 9 14 14 C 1.34776 * 125.65240 * 156.03081 * 13 12 11 15 15 O 1.21275 * 120.00246 * 179.97438 * 14 13 12 16 16 C 1.50702 * 119.99822 * 359.95800 * 14 13 12 17 17 S 1.81001 * 109.47119 * 179.97438 * 16 14 13 18 18 C 1.76198 * 99.99890 * 180.02562 * 17 16 14 19 19 H 1.08003 * 120.00192 * 359.97438 * 18 17 16 20 20 C 1.38803 * 119.99991 * 180.02562 * 18 17 16 21 21 N 1.31625 * 119.99949 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 119.99886 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.47263 * 90.00286 * 22 20 18 24 24 H 1.48499 * 109.47368 * 210.00216 * 22 20 18 25 25 H 1.48501 * 109.47307 * 330.00439 * 22 20 18 26 26 C 1.47020 * 108.69882 * 335.99214 * 13 12 11 27 27 H 1.09001 * 109.88334 * 241.63761 * 26 13 12 28 28 C 1.53002 * 109.87856 * 120.47934 * 26 13 12 29 29 H 1.09002 * 109.46970 * 269.99832 * 1 2 3 30 30 H 1.08991 * 109.47162 * 30.00293 * 1 2 3 31 31 H 1.09005 * 109.46817 * 150.00069 * 1 2 3 32 32 H 1.08007 * 126.79990 * 180.25185 * 5 4 3 33 33 H 1.09000 * 109.46628 * 199.99781 * 7 6 2 34 34 H 1.08997 * 109.47222 * 319.99630 * 7 6 2 35 35 H 1.00900 * 111.00367 * 56.04624 * 8 7 6 36 36 H 1.09005 * 111.00573 * 324.20738 * 11 9 8 37 37 H 1.09000 * 111.00330 * 88.05772 * 11 9 8 38 38 H 1.08998 * 110.21100 * 277.95635 * 12 11 9 39 39 H 1.09002 * 110.41829 * 155.70340 * 12 11 9 40 40 H 1.08997 * 109.47201 * 299.99891 * 16 14 13 41 41 H 1.09002 * 109.47397 * 59.99996 * 16 14 13 42 42 H 0.97008 * 119.99722 * 179.97438 * 21 20 18 43 43 H 1.09001 * 109.47043 * 302.18957 * 28 26 13 44 44 H 1.09006 * 109.47346 * 62.19129 * 28 26 13 45 45 H 1.09003 * 109.47466 * 182.19141 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3095 1.0736 0.0000 4 7 3.4763 0.7564 -0.0005 5 6 3.6213 -0.5373 0.0045 6 6 2.3180 -1.0849 0.0005 7 6 1.9224 -2.5391 0.0019 8 7 1.5612 -2.9496 -1.3616 9 6 1.1697 -4.3650 -1.3990 10 1 0.6569 -4.6462 -0.4792 11 6 2.4069 -5.2706 -1.6366 12 6 1.7582 -6.5102 -2.3064 13 7 0.6868 -5.9644 -3.1594 14 6 0.1633 -6.5670 -4.2454 15 8 -0.7192 -6.0229 -4.8745 16 6 0.6751 -7.9168 -4.6781 17 16 -0.2204 -8.4562 -6.1557 18 6 0.5562 -10.0134 -6.4326 19 1 1.3370 -10.3532 -5.7683 20 6 0.1652 -10.8030 -7.5051 21 7 0.7450 -11.9665 -7.7117 22 14 -1.1848 -10.2150 -8.6545 23 1 -0.5835 -9.4367 -9.7671 24 1 -1.9106 -11.3872 -9.2061 25 1 -2.1336 -9.3536 -7.9040 26 6 0.2832 -4.6540 -2.6286 27 1 -0.7652 -4.6813 -2.3317 28 6 0.4983 -3.5739 -3.6906 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 4.5528 -1.0839 0.0091 33 1 2.7591 -3.1429 0.3534 34 1 1.0678 -2.6826 0.6630 35 1 2.3154 -2.7662 -2.0062 36 1 3.1182 -4.7917 -2.3096 37 1 2.8829 -5.5372 -0.6930 38 1 1.3394 -7.1720 -1.5483 39 1 2.4914 -7.0424 -2.9125 40 1 1.7393 -7.8469 -4.9030 41 1 0.5199 -8.6385 -3.8760 42 1 0.4714 -12.5184 -8.4610 43 1 1.5448 -3.5672 -3.9953 44 1 -0.1306 -3.7844 -4.5557 45 1 0.2340 -2.6004 -3.2776 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734390724.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:36 Heat of formation + Delta-G solvation = 9.853196 kcal Electronic energy + Delta-G solvation = -26617.946917 eV Core-core repulsion = 22764.217269 eV Total energy + Delta-G solvation = -3853.729648 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.85519 -41.32504 -39.11598 -36.85013 -34.69237 -34.63117 -33.98869 -32.52206 -31.72958 -30.05706 -28.64881 -27.85404 -26.94805 -25.70754 -23.97593 -23.42784 -21.68233 -21.56198 -20.23506 -19.54767 -18.56237 -18.19592 -17.93794 -17.28412 -17.11519 -16.85911 -16.21163 -16.05332 -15.73192 -15.57950 -14.93894 -14.93361 -14.64762 -14.50765 -14.01979 -13.89398 -13.76168 -13.74136 -13.58979 -13.44843 -13.33117 -13.09390 -13.02705 -12.98395 -12.83040 -12.65158 -12.45586 -11.95163 -11.88025 -11.75937 -11.65149 -11.29165 -11.17991 -10.86797 -10.54333 -10.07497 -9.68526 -9.31560 -9.01244 -8.52425 -6.23400 0.56505 0.96237 1.29695 1.30699 1.45402 1.53389 1.56333 2.06839 2.24369 2.26602 2.67997 2.85733 3.20254 3.43627 3.47633 3.60798 3.76686 3.84941 4.00549 4.13314 4.17294 4.21305 4.24608 4.38767 4.39761 4.48414 4.58877 4.69316 4.71468 4.76912 4.79307 4.81075 4.85065 4.98482 5.05460 5.11937 5.13138 5.13634 5.34167 5.41681 5.53364 5.69870 6.03905 6.10152 6.37645 6.41825 6.92730 7.12515 7.33957 8.59836 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030971 B = 0.001978 C = 0.001922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.866004 B =14153.939423 C =14563.409222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.009 4.009 3 O 0.071 5.929 4 N -0.406 5.406 5 C -0.003 4.003 6 C -0.211 4.211 7 C 0.144 3.856 8 N -0.674 5.674 9 C 0.100 3.900 10 H 0.117 0.883 11 C -0.150 4.150 12 C 0.089 3.911 13 N -0.613 5.613 14 C 0.547 3.453 15 O -0.559 6.559 16 C -0.102 4.102 17 S -0.176 6.176 18 C -0.528 4.528 19 H 0.062 0.938 20 C 0.046 3.954 21 N -0.915 5.915 22 Si 0.914 3.086 23 H -0.263 1.263 24 H -0.258 1.258 25 H -0.237 1.237 26 C 0.140 3.860 27 H 0.066 0.934 28 C -0.142 4.142 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.208 0.792 33 H 0.063 0.937 34 H 0.099 0.901 35 H 0.348 0.652 36 H 0.077 0.923 37 H 0.114 0.886 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.277 0.723 43 H 0.048 0.952 44 H 0.026 0.974 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.611 22.171 22.781 31.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.073 4.073 3 O 0.010 5.990 4 N -0.113 5.113 5 C -0.182 4.182 6 C -0.216 4.216 7 C 0.016 3.984 8 N -0.305 5.305 9 C -0.011 4.011 10 H 0.134 0.866 11 C -0.189 4.189 12 C -0.034 4.034 13 N -0.348 5.348 14 C 0.335 3.665 15 O -0.438 6.438 16 C -0.253 4.253 17 S 0.051 5.949 18 C -0.676 4.676 19 H 0.080 0.920 20 C -0.160 4.160 21 N -0.553 5.553 22 Si 0.736 3.264 23 H -0.188 1.188 24 H -0.182 1.182 25 H -0.161 1.161 26 C 0.036 3.964 27 H 0.084 0.916 28 C -0.200 4.200 29 H 0.121 0.879 30 H 0.105 0.895 31 H 0.124 0.876 32 H 0.225 0.775 33 H 0.081 0.919 34 H 0.117 0.883 35 H 0.167 0.833 36 H 0.096 0.904 37 H 0.132 0.868 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.125 0.875 41 H 0.127 0.873 42 H 0.087 0.913 43 H 0.067 0.933 44 H 0.045 0.955 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.494 24.069 21.763 32.545 hybrid contribution 1.494 -2.191 -0.243 2.663 sum 3.988 21.878 21.519 30.946 Atomic orbital electron populations 1.20540 0.81888 1.05730 1.05102 1.24983 0.97431 0.85297 0.99610 1.84776 1.11600 1.34378 1.68219 1.73897 0.97827 1.18266 1.21348 1.25411 1.01108 0.89976 1.01659 1.21159 0.91329 0.97947 1.11149 1.20147 1.01126 0.86738 0.90391 1.60401 1.45142 1.17302 1.07698 1.22463 0.94570 0.87131 0.96954 0.86551 1.23533 0.97684 0.95314 1.02405 1.22620 0.89044 0.97731 0.93957 1.48502 1.38873 1.20525 1.26895 1.19579 0.81543 0.85827 0.79574 1.90676 1.31980 1.66312 1.54793 1.23212 1.04009 0.97163 1.00917 1.84720 1.52676 1.22414 1.35084 1.22437 1.24418 1.03755 1.16950 0.91966 1.25555 0.98234 0.94100 0.98091 1.70013 1.42805 1.11624 1.30897 0.85873 0.80638 0.79597 0.80298 1.18756 1.18226 1.16135 1.21602 0.98801 0.81596 0.94356 0.91574 1.21832 1.00681 0.99624 0.97868 0.87909 0.89499 0.87566 0.77531 0.91862 0.88267 0.83261 0.90428 0.86778 0.89425 0.90477 0.87545 0.87288 0.91348 0.93310 0.95465 0.88933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 10.30 71.24 0.73 0.30 16 2 C -0.01 -0.11 7.49 25.04 0.19 0.08 16 3 O 0.07 1.25 11.20 71.72 0.80 2.06 16 4 N -0.41 -7.77 12.07 -59.28 -0.72 -8.49 16 5 C 0.00 -0.04 12.16 85.71 1.04 1.01 16 6 C -0.21 -2.19 5.84 -19.74 -0.12 -2.31 16 7 C 0.14 0.80 5.88 85.56 0.50 1.30 16 8 N -0.67 -5.44 4.80 -489.45 -2.35 -7.79 16 9 C 0.10 0.94 3.11 46.10 0.14 1.09 16 10 H 0.12 0.74 7.86 -2.39 -0.02 0.72 16 11 C -0.15 -1.27 6.68 32.06 0.21 -1.06 16 12 C 0.09 1.38 6.69 86.93 0.58 1.96 16 13 N -0.61 -14.91 3.08 -787.65 -2.43 -17.34 16 14 C 0.55 19.41 7.65 87.66 0.67 20.08 16 15 O -0.56 -24.40 14.77 -3.01 -0.04 -24.45 16 16 C -0.10 -3.93 5.16 71.24 0.37 -3.57 16 17 S -0.18 -8.97 18.55 -56.49 -1.05 -10.02 16 18 C -0.53 -30.81 10.04 67.96 0.68 -30.13 16 19 H 0.06 3.82 8.03 -2.91 -0.02 3.79 16 20 C 0.05 2.69 5.50 84.86 0.47 3.15 16 21 N -0.92 -55.64 13.97 21.65 0.30 -55.34 16 22 Si 0.91 45.17 27.74 68.60 1.90 47.07 16 23 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 25 H -0.24 -11.75 6.74 99.48 0.67 -11.08 16 26 C 0.14 2.70 3.48 45.34 0.16 2.86 16 27 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 28 C -0.14 -3.09 8.23 71.98 0.59 -2.50 16 29 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.11 0.57 8.06 -2.38 -0.02 0.55 16 32 H 0.21 1.55 8.06 -2.91 -0.02 1.53 16 33 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 34 H 0.10 0.37 8.08 -2.39 -0.02 0.35 16 35 H 0.35 3.23 7.65 -89.69 -0.69 2.55 16 36 H 0.08 0.73 7.79 -2.38 -0.02 0.71 16 37 H 0.11 0.39 8.14 -2.39 -0.02 0.38 16 38 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.08 1.28 7.48 -2.39 -0.02 1.26 16 40 H 0.11 3.82 7.85 -2.40 -0.02 3.80 16 41 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 42 H 0.28 15.56 8.31 -92.70 -0.77 14.79 16 43 H 0.05 1.03 7.93 -2.39 -0.02 1.01 16 44 H 0.03 0.81 6.77 -2.38 -0.02 0.80 16 45 H 0.09 1.67 7.40 -2.39 -0.02 1.65 16 Total: -1.00 -78.08 383.60 2.93 -75.15 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 0.28 Total: 6.87 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: 6.23 Total: -7.73 kcal Atomic # 7 Polarization: -83.76 SS G_CDS: -5.19 Total: -88.95 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: 0.76 Total: -22.39 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.90 Total: 47.07 kcal Atomic # 16 Polarization: -8.97 SS G_CDS: -1.05 Total: -10.02 kcal Total: -78.08 2.93 -75.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734390724.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.003 kcal (2) G-P(sol) polarization free energy of solvation -78.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds