Wall clock time and date at job start Tue Mar 31 2020 22:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30169 * 126.80322 * 2 1 4 4 O 1.20924 * 111.60561 * 179.79728 * 3 2 1 5 5 C 1.34034 * 111.56521 * 0.48604 * 4 3 2 6 6 C 1.35447 * 106.44723 * 359.70998 * 5 4 3 7 7 C 1.50701 * 128.00828 * 180.02562 * 6 5 4 8 8 N 1.46902 * 109.47294 * 259.95539 * 7 6 5 9 9 C 1.46902 * 111.00147 * 180.02562 * 8 7 6 10 10 H 1.09000 * 110.64310 * 34.29666 * 9 8 7 11 11 C 1.55156 * 110.71825 * 271.15703 * 9 8 7 12 12 C 1.54909 * 101.58081 * 206.13587 * 11 9 8 13 13 N 1.47427 * 104.83359 * 37.00803 * 12 11 9 14 14 C 1.34772 * 125.64708 * 155.83772 * 13 12 11 15 15 O 1.21288 * 119.99762 * 180.02562 * 14 13 12 16 16 C 1.50698 * 120.00303 * 0.02562 * 14 13 12 17 17 S 1.80997 * 109.47324 * 179.97438 * 16 14 13 18 18 C 1.76201 * 100.00101 * 180.02562 * 17 16 14 19 19 H 1.07997 * 119.99946 * 0.02562 * 18 17 16 20 20 C 1.38799 * 119.99980 * 179.97438 * 18 17 16 21 21 N 1.31634 * 119.99864 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00148 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46993 * 60.00022 * 22 20 18 24 24 H 1.48496 * 109.47492 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47304 * 300.00492 * 22 20 18 26 26 C 1.47319 * 108.73202 * 335.71665 * 13 12 11 27 27 H 1.09002 * 109.84853 * 120.61702 * 26 13 12 28 28 C 1.53004 * 110.06084 * 241.86766 * 26 13 12 29 29 H 1.09002 * 109.47152 * 269.68503 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.68603 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.68584 * 1 2 3 32 32 H 1.08004 * 126.77588 * 179.68602 * 5 4 3 33 33 H 1.08999 * 109.47109 * 19.95336 * 7 6 5 34 34 H 1.09000 * 109.47186 * 139.95238 * 7 6 5 35 35 H 1.00894 * 111.00107 * 56.04171 * 8 7 6 36 36 H 1.09002 * 111.00100 * 324.21104 * 11 9 8 37 37 H 1.08995 * 111.00447 * 88.01752 * 11 9 8 38 38 H 1.09005 * 110.36580 * 155.84465 * 12 11 9 39 39 H 1.09003 * 110.36610 * 278.05778 * 12 11 9 40 40 H 1.08999 * 109.47668 * 300.00636 * 16 14 13 41 41 H 1.08999 * 109.46458 * 60.00528 * 16 14 13 42 42 H 0.96998 * 119.99584 * 179.97438 * 21 20 18 43 43 H 1.09005 * 109.46994 * 177.73379 * 28 26 13 44 44 H 1.08990 * 109.47279 * 297.73650 * 28 26 13 45 45 H 1.08999 * 109.46606 * 57.73814 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7253 0.0040 5 6 3.6025 -0.6068 -0.0034 6 6 2.3540 -1.1320 -0.0063 7 6 1.9591 -2.5863 -0.0138 8 7 1.5979 -2.9887 -1.3797 9 6 1.2059 -4.4037 -1.4254 10 1 0.6928 -4.6902 -0.5074 11 6 2.4428 -5.3083 -1.6682 12 6 1.7965 -6.5447 -2.3416 13 7 0.7283 -5.9940 -3.1955 14 6 0.2093 -6.5905 -4.2869 15 8 -0.6704 -6.0424 -4.9168 16 6 0.7220 -7.9382 -4.7247 17 16 -0.1673 -8.4690 -6.2091 18 6 0.6095 -10.0252 -6.4911 19 1 1.3865 -10.3695 -5.8248 20 6 0.2219 -10.8091 -7.5690 21 7 -0.7256 -10.3897 -8.3808 22 14 1.0448 -12.4593 -7.8675 23 1 0.8326 -13.3385 -6.6898 24 1 0.4550 -13.0958 -9.0725 25 1 2.5008 -12.2557 -8.0771 26 6 0.3195 -4.6851 -2.6569 27 1 0.4731 -3.9112 -3.4089 28 6 -1.1522 -4.7253 -2.2406 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5187 31 1 -0.3633 0.8928 -0.5090 32 1 4.5339 -1.1534 -0.0067 33 1 2.7960 -3.1919 0.3340 34 1 1.1045 -2.7342 0.6465 35 1 2.3519 -2.8010 -2.0232 36 1 3.1543 -4.8257 -2.3382 37 1 2.9190 -5.5800 -0.7262 38 1 2.5317 -7.0741 -2.9478 39 1 1.3766 -7.2110 -1.5880 40 1 1.7873 -7.8680 -4.9445 41 1 0.5627 -8.6640 -3.9272 42 1 -0.9962 -10.9374 -9.1342 43 1 -1.4334 -3.7657 -1.8068 44 1 -1.7718 -4.9244 -3.1148 45 1 -1.2997 -5.5145 -1.5033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734393858.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:51 Heat of formation + Delta-G solvation = 28.651749 kcal Electronic energy + Delta-G solvation = -26438.219906 eV Core-core repulsion = 22585.305424 eV Total energy + Delta-G solvation = -3852.914482 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.28819 -40.17646 -37.95209 -36.24039 -34.44437 -32.49594 -32.43483 -31.62976 -30.60693 -29.01652 -28.49352 -26.73674 -25.49093 -24.46198 -22.86241 -21.87976 -21.65682 -21.17027 -18.95094 -17.94227 -17.86477 -17.65538 -16.83054 -16.45799 -15.86976 -15.12808 -14.95920 -14.81113 -14.60912 -14.49781 -13.93891 -13.89030 -13.75216 -13.57308 -13.23191 -12.96720 -12.83826 -12.76680 -12.72161 -12.52722 -12.38177 -12.04600 -11.73966 -11.64998 -11.51129 -11.19412 -11.05187 -11.04813 -10.90125 -10.77372 -10.21263 -9.92874 -9.82907 -9.34534 -9.06712 -8.85643 -8.50669 -8.24094 -6.50789 -6.22151 -3.92902 1.09010 1.80801 2.83644 2.89380 3.08349 3.22391 3.24156 3.28074 3.55904 3.71708 3.91020 4.14140 4.19575 4.22975 4.33152 4.38788 4.66947 4.70604 4.92767 4.99189 5.04831 5.10019 5.11187 5.12735 5.19370 5.22529 5.32888 5.39175 5.44221 5.45109 5.50051 5.56396 5.62080 5.71051 5.74992 5.82809 5.89823 6.04842 6.12336 6.30670 6.45792 6.60971 6.86769 7.58211 7.68959 7.92240 8.34130 8.58548 9.22804 10.85181 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028646 B = 0.001907 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.205095 B =14677.791326 C =15099.565063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.038 3.962 3 N -0.370 5.370 4 O 0.096 5.904 5 C -0.054 4.054 6 C -0.199 4.199 7 C 0.139 3.861 8 N -0.674 5.674 9 C 0.083 3.917 10 H 0.097 0.903 11 C -0.165 4.165 12 C 0.104 3.896 13 N -0.625 5.625 14 C 0.549 3.451 15 O -0.512 6.512 16 C -0.147 4.147 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.147 3.853 27 H 0.081 0.919 28 C -0.157 4.157 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.214 0.786 33 H 0.047 0.953 34 H 0.088 0.912 35 H 0.347 0.653 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.269 0.731 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.031 16.303 22.122 28.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.121 4.121 3 N -0.077 5.077 4 O 0.033 5.967 5 C -0.137 4.137 6 C -0.203 4.203 7 C 0.010 3.990 8 N -0.305 5.305 9 C -0.028 4.028 10 H 0.115 0.885 11 C -0.204 4.204 12 C -0.020 4.020 13 N -0.363 5.363 14 C 0.338 3.662 15 O -0.386 6.386 16 C -0.298 4.298 17 S 0.167 5.833 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.200 1.200 26 C 0.043 3.957 27 H 0.099 0.901 28 C -0.215 4.215 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.093 0.907 32 H 0.231 0.769 33 H 0.065 0.935 34 H 0.106 0.894 35 H 0.167 0.833 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.701 18.606 20.986 28.836 hybrid contribution 2.583 -3.095 0.655 4.084 sum 9.284 15.511 21.641 28.198 Atomic orbital electron populations 1.20213 0.85762 1.04485 1.03132 1.23534 0.99179 0.88035 1.01375 1.73878 0.89402 1.24309 1.20073 1.84836 1.21696 1.22841 1.67365 1.25844 1.00659 0.83973 1.03181 1.21169 0.92130 0.97461 1.09573 1.20095 1.00167 0.87701 0.91078 1.60340 1.44946 1.18355 1.06849 1.22702 0.94983 0.86296 0.98831 0.88513 1.23518 0.98128 0.97474 1.01313 1.22168 0.90013 0.95774 0.94011 1.48657 1.39221 1.20490 1.27911 1.19984 0.81586 0.86477 0.78164 1.90702 1.29769 1.65052 1.53028 1.23513 1.04785 0.95545 1.05911 1.85406 1.49625 1.22578 1.25683 1.22814 1.25023 1.04643 1.15930 0.91029 1.24993 0.95058 0.98596 0.94938 1.70010 1.27578 1.37752 1.14891 0.86227 0.79405 0.82028 0.77851 1.19951 1.20797 1.19951 1.21401 0.94228 0.85607 0.94458 0.90122 1.22070 0.95659 1.01478 1.02332 0.90463 0.88976 0.90672 0.76941 0.93530 0.89357 0.83329 0.90341 0.89972 0.90272 0.91349 0.89458 0.89411 0.92118 0.91684 0.90912 0.92953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.39 36.01 0.37 -0.16 16 2 C 0.04 0.33 7.33 -82.10 -0.60 -0.27 16 3 N -0.37 -3.83 12.07 33.42 0.40 -3.42 16 4 O 0.10 0.83 11.20 17.19 0.19 1.02 16 5 C -0.05 -0.30 12.26 29.74 0.36 0.06 16 6 C -0.20 -1.32 5.84 -104.42 -0.61 -1.93 16 7 C 0.14 0.71 6.04 -4.97 -0.03 0.68 16 8 N -0.67 -4.40 6.28 -106.06 -0.67 -5.07 16 9 C 0.08 0.61 2.77 -65.88 -0.18 0.42 16 10 H 0.10 0.64 7.56 -51.93 -0.39 0.25 16 11 C -0.16 -1.09 6.67 -24.58 -0.16 -1.25 16 12 C 0.10 1.02 6.69 -2.53 -0.02 1.00 16 13 N -0.62 -8.61 3.08 -162.79 -0.50 -9.11 16 14 C 0.55 10.43 7.67 -10.99 -0.08 10.34 16 15 O -0.51 -11.68 14.94 5.55 0.08 -11.60 16 16 C -0.15 -2.98 5.16 36.00 0.19 -2.80 16 17 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 18 C -0.54 -15.21 9.50 30.94 0.29 -14.91 16 19 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 20 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.11 13.22 55.49 0.73 -25.38 16 22 Si 0.92 21.29 29.55 -169.99 -5.02 16.27 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 C 0.15 1.70 3.22 -66.79 -0.22 1.48 16 27 H 0.08 1.07 8.03 -51.93 -0.42 0.65 16 28 C -0.16 -1.87 9.11 37.16 0.34 -1.54 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.21 0.32 8.06 -52.48 -0.42 -0.10 16 33 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.09 0.44 8.08 -51.93 -0.42 0.02 16 35 H 0.35 2.26 8.25 -39.29 -0.32 1.94 16 36 H 0.08 0.52 7.79 -51.93 -0.40 0.12 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.78 7.48 -51.93 -0.39 0.39 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.09 1.65 7.85 -51.92 -0.41 1.24 16 41 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 42 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 1.12 6.94 -51.93 -0.36 0.76 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 389.80 15.07 5.87 5.87 Total: -1.00 -35.50 389.80 -8.44 -43.95 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -6.89 Total: -1.83 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -0.44 Total: -6.88 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: -0.03 Total: -42.97 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.28 Total: -10.58 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.50 -8.44 -43.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734393858.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.598 kcal (2) G-P(sol) polarization free energy of solvation -35.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds