Wall clock time and date at job start Tue Mar 31 2020 22:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30169 * 126.80322 * 2 1 4 4 O 1.20924 * 111.60561 * 179.79728 * 3 2 1 5 5 C 1.34034 * 111.56521 * 0.48604 * 4 3 2 6 6 C 1.35447 * 106.44723 * 359.70998 * 5 4 3 7 7 C 1.50701 * 128.00828 * 180.02562 * 6 5 4 8 8 N 1.46902 * 109.47294 * 259.95539 * 7 6 5 9 9 C 1.46902 * 111.00147 * 180.02562 * 8 7 6 10 10 H 1.09000 * 110.64310 * 34.29666 * 9 8 7 11 11 C 1.55156 * 110.71825 * 271.15703 * 9 8 7 12 12 C 1.54909 * 101.58081 * 206.13587 * 11 9 8 13 13 N 1.47427 * 104.83359 * 37.00803 * 12 11 9 14 14 C 1.34772 * 125.64708 * 155.83772 * 13 12 11 15 15 O 1.21288 * 119.99762 * 180.02562 * 14 13 12 16 16 C 1.50698 * 120.00303 * 0.02562 * 14 13 12 17 17 S 1.80997 * 109.47324 * 179.97438 * 16 14 13 18 18 C 1.76201 * 100.00101 * 180.02562 * 17 16 14 19 19 H 1.07997 * 119.99946 * 0.02562 * 18 17 16 20 20 C 1.38799 * 119.99980 * 179.97438 * 18 17 16 21 21 N 1.31634 * 119.99864 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00148 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46993 * 60.00022 * 22 20 18 24 24 H 1.48496 * 109.47492 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47304 * 300.00492 * 22 20 18 26 26 C 1.47319 * 108.73202 * 335.71665 * 13 12 11 27 27 H 1.09002 * 109.84853 * 120.61702 * 26 13 12 28 28 C 1.53004 * 110.06084 * 241.86766 * 26 13 12 29 29 H 1.09002 * 109.47152 * 269.68503 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.68603 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.68584 * 1 2 3 32 32 H 1.08004 * 126.77588 * 179.68602 * 5 4 3 33 33 H 1.08999 * 109.47109 * 19.95336 * 7 6 5 34 34 H 1.09000 * 109.47186 * 139.95238 * 7 6 5 35 35 H 1.00894 * 111.00107 * 56.04171 * 8 7 6 36 36 H 1.09002 * 111.00100 * 324.21104 * 11 9 8 37 37 H 1.08995 * 111.00447 * 88.01752 * 11 9 8 38 38 H 1.09005 * 110.36580 * 155.84465 * 12 11 9 39 39 H 1.09003 * 110.36610 * 278.05778 * 12 11 9 40 40 H 1.08999 * 109.47668 * 300.00636 * 16 14 13 41 41 H 1.08999 * 109.46458 * 60.00528 * 16 14 13 42 42 H 0.96998 * 119.99584 * 179.97438 * 21 20 18 43 43 H 1.09005 * 109.46994 * 177.73379 * 28 26 13 44 44 H 1.08990 * 109.47279 * 297.73650 * 28 26 13 45 45 H 1.08999 * 109.46606 * 57.73814 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7253 0.0040 5 6 3.6025 -0.6068 -0.0034 6 6 2.3540 -1.1320 -0.0063 7 6 1.9591 -2.5863 -0.0138 8 7 1.5979 -2.9887 -1.3797 9 6 1.2059 -4.4037 -1.4254 10 1 0.6928 -4.6902 -0.5074 11 6 2.4428 -5.3083 -1.6682 12 6 1.7965 -6.5447 -2.3416 13 7 0.7283 -5.9940 -3.1955 14 6 0.2093 -6.5905 -4.2869 15 8 -0.6704 -6.0424 -4.9168 16 6 0.7220 -7.9382 -4.7247 17 16 -0.1673 -8.4690 -6.2091 18 6 0.6095 -10.0252 -6.4911 19 1 1.3865 -10.3695 -5.8248 20 6 0.2219 -10.8091 -7.5690 21 7 -0.7256 -10.3897 -8.3808 22 14 1.0448 -12.4593 -7.8675 23 1 0.8326 -13.3385 -6.6898 24 1 0.4550 -13.0958 -9.0725 25 1 2.5008 -12.2557 -8.0771 26 6 0.3195 -4.6851 -2.6569 27 1 0.4731 -3.9112 -3.4089 28 6 -1.1522 -4.7253 -2.2406 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5187 31 1 -0.3633 0.8928 -0.5090 32 1 4.5339 -1.1534 -0.0067 33 1 2.7960 -3.1919 0.3340 34 1 1.1045 -2.7342 0.6465 35 1 2.3519 -2.8010 -2.0232 36 1 3.1543 -4.8257 -2.3382 37 1 2.9190 -5.5800 -0.7262 38 1 2.5317 -7.0741 -2.9478 39 1 1.3766 -7.2110 -1.5880 40 1 1.7873 -7.8680 -4.9445 41 1 0.5627 -8.6640 -3.9272 42 1 -0.9962 -10.9374 -9.1342 43 1 -1.4334 -3.7657 -1.8068 44 1 -1.7718 -4.9244 -3.1148 45 1 -1.2997 -5.5145 -1.5033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734393858.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:51 Heat of formation + Delta-G solvation = 3.508510 kcal Electronic energy + Delta-G solvation = -26439.310198 eV Core-core repulsion = 22585.305424 eV Total energy + Delta-G solvation = -3854.004774 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.85455 -41.24159 -39.04422 -36.94840 -35.12857 -34.58811 -33.24901 -32.49677 -31.54141 -29.89559 -29.49844 -27.66723 -27.35513 -25.17491 -23.84229 -22.40875 -22.13734 -21.92896 -20.33982 -19.44168 -18.53885 -18.38578 -18.05396 -17.41889 -16.88287 -16.69532 -16.21445 -16.09775 -15.59218 -15.26703 -15.18337 -14.66430 -14.61358 -14.45815 -14.11920 -14.02117 -13.79341 -13.74231 -13.53574 -13.28709 -13.21538 -13.16758 -13.00970 -12.86190 -12.66912 -12.56984 -12.50190 -12.12567 -11.84037 -11.77139 -11.65759 -11.13013 -10.86514 -10.76217 -10.42044 -10.28182 -9.67451 -9.31480 -8.68213 -8.34591 -6.13485 0.62859 1.22289 1.27717 1.43947 1.45378 1.55135 1.61101 2.09156 2.27503 2.48057 2.99264 3.15549 3.24813 3.37913 3.53527 3.63354 3.71062 3.95427 3.98663 4.10769 4.22464 4.25250 4.28437 4.38223 4.42638 4.45813 4.62947 4.63665 4.70032 4.70905 4.76178 4.78611 4.81981 4.94482 5.03273 5.07688 5.10342 5.15458 5.29993 5.32020 5.40810 5.49914 6.04568 6.19181 6.39134 6.44962 7.06112 7.17710 7.40567 8.74394 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028646 B = 0.001907 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.205095 B =14677.791326 C =15099.565063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.021 3.979 3 N -0.410 5.410 4 O 0.080 5.920 5 C -0.039 4.039 6 C -0.209 4.209 7 C 0.145 3.855 8 N -0.683 5.683 9 C 0.101 3.899 10 H 0.115 0.885 11 C -0.149 4.149 12 C 0.090 3.910 13 N -0.615 5.615 14 C 0.545 3.455 15 O -0.564 6.564 16 C -0.119 4.119 17 S -0.153 6.153 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.012 3.988 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.261 1.261 24 H -0.279 1.279 25 H -0.261 1.261 26 C 0.140 3.860 27 H 0.058 0.942 28 C -0.151 4.151 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.256 0.744 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.348 0.652 36 H 0.081 0.919 37 H 0.118 0.882 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.271 0.729 43 H 0.084 0.916 44 H 0.028 0.972 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.929 15.043 25.041 31.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.138 4.138 3 N -0.119 5.119 4 O 0.019 5.981 5 C -0.121 4.121 6 C -0.213 4.213 7 C 0.017 3.983 8 N -0.315 5.315 9 C -0.010 4.010 10 H 0.133 0.867 11 C -0.189 4.189 12 C -0.032 4.032 13 N -0.350 5.350 14 C 0.333 3.667 15 O -0.443 6.443 16 C -0.270 4.270 17 S 0.074 5.926 18 C -0.694 4.694 19 H 0.101 0.899 20 C -0.193 4.193 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.186 1.186 24 H -0.205 1.205 25 H -0.186 1.186 26 C 0.036 3.964 27 H 0.076 0.924 28 C -0.209 4.209 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.085 0.915 32 H 0.272 0.728 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.168 0.832 36 H 0.099 0.901 37 H 0.136 0.864 38 H 0.098 0.902 39 H 0.104 0.896 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.080 0.920 43 H 0.103 0.897 44 H 0.048 0.952 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.650 17.369 23.971 31.135 hybrid contribution 1.710 -2.589 -0.151 3.106 sum 11.360 14.780 23.820 30.247 Atomic orbital electron populations 1.20231 0.85199 1.04148 1.03821 1.23970 0.99960 0.88771 1.01072 1.73879 0.90231 1.25703 1.22127 1.84783 1.21119 1.24545 1.67634 1.26640 1.02017 0.82795 1.00685 1.21380 0.92038 0.97790 1.10085 1.20132 1.01382 0.86834 0.89985 1.60220 1.45545 1.17698 1.08007 1.22495 0.94561 0.87084 0.96872 0.86703 1.23511 0.97488 0.95222 1.02634 1.22592 0.89028 0.97733 0.93890 1.48593 1.39061 1.20988 1.26353 1.19746 0.81432 0.86118 0.79428 1.90684 1.32217 1.66122 1.55260 1.23300 1.04364 0.96822 1.02495 1.85616 1.52372 1.23794 1.30784 1.23153 1.25177 1.04603 1.16426 0.89876 1.26160 0.95574 1.03088 0.94435 1.70187 1.29381 1.39602 1.15614 0.84989 0.78537 0.76326 0.78054 1.18552 1.20450 1.18567 1.21614 0.95125 0.83728 0.95892 0.92394 1.21997 0.95352 1.02876 1.00694 0.89249 0.88705 0.91534 0.72848 0.90790 0.88969 0.83207 0.90072 0.86365 0.90163 0.89576 0.87734 0.87679 0.91997 0.89674 0.95246 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 10.39 71.24 0.74 -0.26 16 2 C 0.02 0.35 7.33 43.58 0.32 0.67 16 3 N -0.41 -8.37 12.07 -49.56 -0.60 -8.97 16 4 O 0.08 1.30 11.20 71.69 0.80 2.10 16 5 C -0.04 -0.33 12.26 67.17 0.82 0.50 16 6 C -0.21 -2.20 5.84 -19.74 -0.12 -2.32 16 7 C 0.15 0.88 6.04 85.56 0.52 1.40 16 8 N -0.68 -6.67 6.28 -489.45 -3.07 -9.74 16 9 C 0.10 1.10 2.77 46.10 0.13 1.23 16 10 H 0.12 0.95 7.56 -2.39 -0.02 0.93 16 11 C -0.15 -1.26 6.67 31.99 0.21 -1.04 16 12 C 0.09 1.44 6.69 86.85 0.58 2.02 16 13 N -0.61 -16.21 3.08 -787.34 -2.42 -18.64 16 14 C 0.54 20.99 7.67 87.66 0.67 21.66 16 15 O -0.56 -27.19 14.94 -3.05 -0.05 -27.24 16 16 C -0.12 -4.81 5.16 71.24 0.37 -4.44 16 17 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 18 C -0.55 -31.22 9.50 67.95 0.65 -30.58 16 19 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 20 C 0.01 0.69 5.49 84.86 0.47 1.16 16 21 N -0.91 -56.28 13.22 21.65 0.29 -55.99 16 22 Si 1.00 43.37 29.55 68.60 2.03 45.40 16 23 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 24 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 26 C 0.14 3.07 3.22 45.28 0.15 3.21 16 27 H 0.06 1.55 8.03 -2.39 -0.02 1.53 16 28 C -0.15 -3.55 9.11 71.98 0.66 -2.89 16 29 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 0.95 8.14 -2.38 -0.02 0.94 16 32 H 0.26 -0.43 8.06 -2.91 -0.02 -0.45 16 33 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 34 H 0.09 0.54 8.08 -2.39 -0.02 0.52 16 35 H 0.35 3.43 8.25 -89.70 -0.74 2.69 16 36 H 0.08 0.71 7.79 -2.39 -0.02 0.69 16 37 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.08 1.31 7.48 -2.38 -0.02 1.29 16 39 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.10 3.84 7.85 -2.40 -0.02 3.82 16 41 H 0.10 3.86 8.14 -2.40 -0.02 3.84 16 42 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 43 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 44 H 0.03 0.94 6.94 -2.39 -0.02 0.92 16 45 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -83.64 389.80 2.24 -81.40 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 0.26 Total: 11.14 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: 6.16 Total: -9.69 kcal Atomic # 7 Polarization: -87.54 SS G_CDS: -5.81 Total: -93.35 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: 0.76 Total: -25.13 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -83.64 2.24 -81.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734393858.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.912 kcal (2) G-P(sol) polarization free energy of solvation -83.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds