Wall clock time and date at job start Tue Mar 31 2020 22:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34487 * 126.83138 * 2 1 4 4 N 1.36450 * 108.85827 * 180.25014 * 3 2 1 5 5 H 0.97001 * 124.85495 * 179.72493 * 4 3 2 6 6 C 1.34658 * 110.29614 * 359.75181 * 4 3 2 7 7 C 1.36774 * 108.40028 * 359.97438 * 6 4 3 8 8 C 1.47254 * 126.94709 * 179.97438 * 7 6 4 9 9 O 1.21628 * 120.00119 * 215.20009 * 8 7 6 10 10 N 1.34774 * 120.00131 * 35.19962 * 8 7 6 11 11 C 1.46505 * 119.99771 * 356.16618 * 10 8 7 12 12 C 1.46500 * 120.00631 * 176.16720 * 10 8 7 13 13 C 1.53000 * 109.46957 * 89.99485 * 12 10 8 14 14 H 1.09005 * 109.47226 * 65.00838 * 13 12 10 15 15 C 1.53004 * 109.47247 * 185.00018 * 13 12 10 16 16 N 1.46496 * 109.47464 * 305.00643 * 13 12 10 17 17 C 1.34782 * 120.00146 * 155.00025 * 16 13 12 18 18 O 1.21280 * 119.99670 * 359.97438 * 17 16 13 19 19 C 1.50691 * 119.99940 * 179.97438 * 17 16 13 20 20 S 1.81004 * 109.47025 * 179.97438 * 19 17 16 21 21 C 1.76205 * 99.99974 * 180.02562 * 20 19 17 22 22 H 1.07997 * 119.99845 * 0.02562 * 21 20 19 23 23 C 1.38796 * 119.99675 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99786 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 120.00369 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.47364 * 89.99657 * 25 23 21 27 27 H 1.48498 * 109.47445 * 209.99702 * 25 23 21 28 28 H 1.48496 * 109.47083 * 329.99845 * 25 23 21 29 29 H 1.09004 * 109.47266 * 270.14524 * 1 2 3 30 30 H 1.08999 * 109.47517 * 30.14972 * 1 2 3 31 31 H 1.09007 * 109.46867 * 150.15287 * 1 2 3 32 32 H 1.08001 * 125.57669 * 0.03422 * 3 2 1 33 33 H 1.08005 * 125.80281 * 180.02562 * 6 4 3 34 34 H 1.08996 * 109.47179 * 275.37161 * 11 10 8 35 35 H 1.08994 * 109.47036 * 35.37197 * 11 10 8 36 36 H 1.08999 * 109.47014 * 155.37203 * 11 10 8 37 37 H 1.09001 * 109.46490 * 330.00257 * 12 10 8 38 38 H 1.08991 * 109.47327 * 209.99748 * 12 10 8 39 39 H 1.09005 * 109.46338 * 60.00276 * 15 13 12 40 40 H 1.08994 * 109.47150 * 180.02562 * 15 13 12 41 41 H 1.09001 * 109.47101 * 300.01077 * 15 13 12 42 42 H 0.97000 * 120.00157 * 334.99494 * 16 13 12 43 43 H 1.08998 * 109.47601 * 299.99749 * 19 17 16 44 44 H 1.09003 * 109.47049 * 60.00085 * 19 17 16 45 45 H 0.96995 * 120.00097 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6554 -0.0056 5 1 4.3840 1.2415 -0.0106 6 6 3.6657 -0.6901 -0.0039 7 6 2.3864 -1.1741 0.0036 8 6 1.9751 -2.5880 0.0074 9 8 0.9754 -2.9321 -0.5940 10 7 2.7062 -3.5007 0.6772 11 6 3.9551 -3.1020 1.3312 12 6 2.2523 -4.8917 0.7514 13 6 2.8230 -5.6781 -0.4304 14 1 3.9088 -5.7243 -0.3456 15 6 2.2502 -7.0968 -0.4232 16 7 2.4589 -5.0107 -1.6826 17 6 3.2170 -5.1836 -2.7836 18 8 4.2008 -5.8913 -2.7373 19 6 2.8421 -4.4975 -4.0718 20 16 4.0459 -4.9235 -5.3547 21 6 3.3839 -4.0126 -6.7100 22 1 2.4877 -3.4244 -6.5789 23 6 4.0149 -4.0503 -7.9457 24 7 3.5201 -3.3702 -8.9583 25 14 5.5653 -5.0672 -8.1722 26 1 5.1980 -6.4423 -8.5958 27 1 6.4207 -4.4408 -9.2120 28 1 6.3099 -5.1269 -6.8888 29 1 -0.3634 0.0026 1.0277 30 1 -0.3634 0.8886 -0.5161 31 1 -0.3633 -0.8914 -0.5115 32 1 1.9867 2.1059 0.0005 33 1 4.5665 -1.2859 -0.0069 34 1 4.7688 -3.1272 0.6065 35 1 3.8517 -2.0915 1.7264 36 1 4.1738 -3.7907 2.1473 37 1 1.1632 -4.9208 0.7152 38 1 2.5968 -5.3370 1.6846 39 1 1.1645 -7.0506 -0.5079 40 1 2.6572 -7.6572 -1.2648 41 1 2.5211 -7.5933 0.5086 42 1 1.6722 -4.4445 -1.7195 43 1 1.8494 -4.8239 -4.3818 44 1 2.8391 -3.4180 -3.9210 45 1 3.9608 -3.3968 -9.8219 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001735196442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:00 Heat of formation + Delta-G solvation = -25.298091 kcal Electronic energy + Delta-G solvation = -27559.115535 eV Core-core repulsion = 23703.861612 eV Total energy + Delta-G solvation = -3855.253922 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.49198 -39.94886 -38.75834 -36.23867 -34.68207 -32.62582 -32.37190 -31.55536 -30.16807 -28.52239 -27.60367 -26.71593 -26.19392 -25.53921 -22.72168 -21.54128 -20.19705 -20.08006 -18.91822 -18.13370 -17.79028 -16.77562 -16.40554 -16.30157 -15.93423 -15.01135 -14.90762 -14.75901 -14.47700 -14.18164 -14.00679 -13.76519 -13.47424 -13.26839 -13.13561 -13.00868 -12.86062 -12.75515 -12.71016 -12.59727 -12.35965 -12.14106 -11.93797 -11.73799 -11.54051 -11.20068 -11.14335 -10.95812 -10.50446 -9.98499 -9.79780 -9.34366 -8.97005 -8.93487 -8.79483 -8.64271 -8.46198 -8.41180 -6.83060 -6.22211 -3.92691 1.64819 2.20538 2.75153 2.89879 3.02546 3.16316 3.21672 3.36886 3.45509 3.54526 3.83541 4.38793 4.53544 4.61567 4.70600 4.80294 4.85554 4.88356 5.00508 5.15924 5.16901 5.20683 5.21999 5.27678 5.34015 5.41109 5.48501 5.55657 5.63023 5.68878 5.71270 5.92067 5.93135 6.02138 6.08112 6.15873 6.20674 6.33578 6.59023 6.70640 6.84118 7.19862 7.22617 7.89873 8.01389 8.16838 8.50438 8.71772 9.24086 10.87290 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010489 B = 0.003497 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.852363 B = 8004.262076 C = 9579.209243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.113 4.113 3 C -0.023 4.023 4 N -0.550 5.550 5 H 0.418 0.582 6 C 0.046 3.954 7 C -0.226 4.226 8 C 0.598 3.402 9 O -0.539 6.539 10 N -0.613 5.613 11 C 0.073 3.927 12 C 0.109 3.891 13 C 0.127 3.873 14 H 0.086 0.914 15 C -0.162 4.162 16 N -0.727 5.727 17 C 0.531 3.469 18 O -0.529 6.529 19 C -0.121 4.121 20 S -0.144 6.144 21 C -0.518 4.518 22 H 0.088 0.912 23 C 0.095 3.905 24 N -0.882 5.882 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.275 1.275 28 H -0.236 1.236 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.168 0.832 33 H 0.175 0.825 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.410 0.590 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.424 6.425 27.552 28.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 C -0.151 4.151 4 N -0.144 5.144 5 H 0.254 0.746 6 C -0.091 4.091 7 C -0.236 4.236 8 C 0.389 3.611 9 O -0.417 6.417 10 N -0.345 5.345 11 C -0.070 4.070 12 C -0.014 4.014 13 C 0.021 3.979 14 H 0.104 0.896 15 C -0.221 4.221 16 N -0.386 5.386 17 C 0.317 3.683 18 O -0.405 6.405 19 C -0.272 4.272 20 S 0.082 5.918 21 C -0.666 4.666 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.519 5.519 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.160 1.160 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.186 0.814 33 H 0.192 0.808 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.250 0.750 43 H 0.113 0.887 44 H 0.112 0.888 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.238 5.250 27.144 27.648 hybrid contribution -0.329 1.035 -0.511 1.200 sum -0.567 6.286 26.633 27.371 Atomic orbital electron populations 1.20211 0.89438 1.03230 1.01515 1.20491 0.95487 0.90242 1.05682 1.21583 0.82453 0.99233 1.11821 1.41520 1.08354 1.06712 1.57826 0.74559 1.22177 0.98660 0.83773 1.04448 1.20190 0.92935 0.92509 1.17995 1.17461 0.82107 0.84169 0.77359 1.90653 1.26929 1.80740 1.43407 1.47642 1.24135 1.08833 1.53904 1.22052 0.85685 1.01834 0.97425 1.21884 1.01283 0.80321 0.97931 1.21297 1.00751 0.91983 0.83906 0.89620 1.22135 1.01390 0.95983 1.02595 1.46348 1.31296 1.51663 1.09304 1.20238 0.82622 0.80754 0.84676 1.90657 1.26776 1.38394 1.84657 1.23252 1.04750 1.03493 0.95664 1.84654 1.35908 1.66319 1.04883 1.22353 1.15645 1.33489 0.95129 0.89419 1.24707 0.97313 0.94678 0.94608 1.69948 1.39972 1.40388 1.01602 0.86732 0.83710 0.80916 0.80465 1.19227 1.20045 1.15979 0.92195 0.91973 0.90233 0.81434 0.80846 0.92487 0.90472 0.90877 0.89199 0.89086 0.92261 0.91413 0.91873 0.75024 0.88688 0.88800 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.89 10.29 36.00 0.37 -0.52 16 2 C -0.11 -1.24 6.35 -102.54 -0.65 -1.89 16 3 C -0.02 -0.19 11.82 -16.82 -0.20 -0.39 16 4 N -0.55 -3.91 5.90 -12.84 -0.08 -3.98 16 5 H 0.42 1.57 8.96 -40.82 -0.37 1.20 16 6 C 0.05 0.41 9.63 -16.84 -0.16 0.24 16 7 C -0.23 -2.63 5.59 -103.35 -0.58 -3.21 16 8 C 0.60 7.70 6.95 -12.60 -0.09 7.61 16 9 O -0.54 -8.39 13.01 5.25 0.07 -8.32 16 10 N -0.61 -6.16 2.77 -182.92 -0.51 -6.66 16 11 C 0.07 0.50 9.04 59.85 0.54 1.04 16 12 C 0.11 1.02 5.18 -4.04 -0.02 1.00 16 13 C 0.13 1.55 2.88 -67.93 -0.20 1.36 16 14 H 0.09 1.15 7.58 -51.93 -0.39 0.75 16 15 C -0.16 -1.80 9.48 37.16 0.35 -1.44 16 16 N -0.73 -11.37 4.48 -53.81 -0.24 -11.61 16 17 C 0.53 10.52 7.81 -10.99 -0.09 10.44 16 18 O -0.53 -11.92 15.52 5.56 0.09 -11.84 16 19 C -0.12 -2.65 6.16 36.00 0.22 -2.43 16 20 S -0.14 -3.85 18.55 -107.50 -1.99 -5.84 16 21 C -0.52 -15.62 10.04 30.94 0.31 -15.31 16 22 H 0.09 2.78 8.03 -52.49 -0.42 2.36 16 23 C 0.10 2.87 5.50 -17.43 -0.10 2.78 16 24 N -0.88 -27.38 13.97 55.49 0.78 -26.61 16 25 Si 0.86 22.38 27.74 -169.99 -4.72 17.67 16 26 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.24 -6.14 6.74 56.52 0.38 -5.76 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.99 7.00 -51.93 -0.36 0.63 16 32 H 0.17 0.93 8.06 -52.49 -0.42 0.50 16 33 H 0.17 1.20 6.09 -52.48 -0.32 0.88 16 34 H 0.06 0.40 7.29 -51.93 -0.38 0.02 16 35 H 0.08 0.46 5.88 -51.93 -0.31 0.15 16 36 H 0.07 0.35 7.83 -51.93 -0.41 -0.06 16 37 H 0.09 0.90 7.48 -51.93 -0.39 0.52 16 38 H 0.09 0.57 7.86 -51.93 -0.41 0.16 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.41 6.50 5.65 -40.82 -0.23 6.27 16 43 H 0.09 2.01 8.14 -51.92 -0.42 1.58 16 44 H 0.09 2.01 8.14 -51.91 -0.42 1.59 16 45 H 0.27 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 382.63 15.07 5.77 5.77 Total: -1.00 -38.25 382.63 -7.64 -45.89 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -6.52 Total: 6.29 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -0.28 Total: -0.74 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: -0.05 Total: -48.87 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: 0.15 Total: -20.16 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.72 Total: 17.67 kcal Atomic # 16 Polarization: -3.85 SS G_CDS: -1.99 Total: -5.84 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -38.25 -7.64 -45.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735196442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.588 kcal (2) G-P(sol) polarization free energy of solvation -38.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds