Wall clock time and date at job start Tue Mar 31 2020 22:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34487 * 126.83138 * 2 1 4 4 N 1.36450 * 108.85827 * 180.25014 * 3 2 1 5 5 H 0.97001 * 124.85495 * 179.72493 * 4 3 2 6 6 C 1.34658 * 110.29614 * 359.75181 * 4 3 2 7 7 C 1.36774 * 108.40028 * 359.97438 * 6 4 3 8 8 C 1.47254 * 126.94709 * 179.97438 * 7 6 4 9 9 O 1.21628 * 120.00119 * 215.20009 * 8 7 6 10 10 N 1.34774 * 120.00131 * 35.19962 * 8 7 6 11 11 C 1.46505 * 119.99771 * 356.16618 * 10 8 7 12 12 C 1.46500 * 120.00631 * 176.16720 * 10 8 7 13 13 C 1.53000 * 109.46957 * 89.99485 * 12 10 8 14 14 H 1.09005 * 109.47226 * 65.00838 * 13 12 10 15 15 C 1.53004 * 109.47247 * 185.00018 * 13 12 10 16 16 N 1.46496 * 109.47464 * 305.00643 * 13 12 10 17 17 C 1.34782 * 120.00146 * 155.00025 * 16 13 12 18 18 O 1.21280 * 119.99670 * 359.97438 * 17 16 13 19 19 C 1.50691 * 119.99940 * 179.97438 * 17 16 13 20 20 S 1.81004 * 109.47025 * 179.97438 * 19 17 16 21 21 C 1.76205 * 99.99974 * 180.02562 * 20 19 17 22 22 H 1.07997 * 119.99845 * 0.02562 * 21 20 19 23 23 C 1.38796 * 119.99675 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99786 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 120.00369 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.47364 * 89.99657 * 25 23 21 27 27 H 1.48498 * 109.47445 * 209.99702 * 25 23 21 28 28 H 1.48496 * 109.47083 * 329.99845 * 25 23 21 29 29 H 1.09004 * 109.47266 * 270.14524 * 1 2 3 30 30 H 1.08999 * 109.47517 * 30.14972 * 1 2 3 31 31 H 1.09007 * 109.46867 * 150.15287 * 1 2 3 32 32 H 1.08001 * 125.57669 * 0.03422 * 3 2 1 33 33 H 1.08005 * 125.80281 * 180.02562 * 6 4 3 34 34 H 1.08996 * 109.47179 * 275.37161 * 11 10 8 35 35 H 1.08994 * 109.47036 * 35.37197 * 11 10 8 36 36 H 1.08999 * 109.47014 * 155.37203 * 11 10 8 37 37 H 1.09001 * 109.46490 * 330.00257 * 12 10 8 38 38 H 1.08991 * 109.47327 * 209.99748 * 12 10 8 39 39 H 1.09005 * 109.46338 * 60.00276 * 15 13 12 40 40 H 1.08994 * 109.47150 * 180.02562 * 15 13 12 41 41 H 1.09001 * 109.47101 * 300.01077 * 15 13 12 42 42 H 0.97000 * 120.00157 * 334.99494 * 16 13 12 43 43 H 1.08998 * 109.47601 * 299.99749 * 19 17 16 44 44 H 1.09003 * 109.47049 * 60.00085 * 19 17 16 45 45 H 0.96995 * 120.00097 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6554 -0.0056 5 1 4.3840 1.2415 -0.0106 6 6 3.6657 -0.6901 -0.0039 7 6 2.3864 -1.1741 0.0036 8 6 1.9751 -2.5880 0.0074 9 8 0.9754 -2.9321 -0.5940 10 7 2.7062 -3.5007 0.6772 11 6 3.9551 -3.1020 1.3312 12 6 2.2523 -4.8917 0.7514 13 6 2.8230 -5.6781 -0.4304 14 1 3.9088 -5.7243 -0.3456 15 6 2.2502 -7.0968 -0.4232 16 7 2.4589 -5.0107 -1.6826 17 6 3.2170 -5.1836 -2.7836 18 8 4.2008 -5.8913 -2.7373 19 6 2.8421 -4.4975 -4.0718 20 16 4.0459 -4.9235 -5.3547 21 6 3.3839 -4.0126 -6.7100 22 1 2.4877 -3.4244 -6.5789 23 6 4.0149 -4.0503 -7.9457 24 7 3.5201 -3.3702 -8.9583 25 14 5.5653 -5.0672 -8.1722 26 1 5.1980 -6.4423 -8.5958 27 1 6.4207 -4.4408 -9.2120 28 1 6.3099 -5.1269 -6.8888 29 1 -0.3634 0.0026 1.0277 30 1 -0.3634 0.8886 -0.5161 31 1 -0.3633 -0.8914 -0.5115 32 1 1.9867 2.1059 0.0005 33 1 4.5665 -1.2859 -0.0069 34 1 4.7688 -3.1272 0.6065 35 1 3.8517 -2.0915 1.7264 36 1 4.1738 -3.7907 2.1473 37 1 1.1632 -4.9208 0.7152 38 1 2.5968 -5.3370 1.6846 39 1 1.1645 -7.0506 -0.5079 40 1 2.6572 -7.6572 -1.2648 41 1 2.5211 -7.5933 0.5086 42 1 1.6722 -4.4445 -1.7195 43 1 1.8494 -4.8239 -4.3818 44 1 2.8391 -3.4180 -3.9210 45 1 3.9608 -3.3968 -9.8219 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001735196442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:59 Heat of formation + Delta-G solvation = -52.635374 kcal Electronic energy + Delta-G solvation = -27560.300968 eV Core-core repulsion = 23703.861612 eV Total energy + Delta-G solvation = -3856.439356 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.19879 -41.05802 -40.00977 -37.27206 -35.74797 -34.70351 -33.34956 -32.85983 -31.00931 -30.05790 -28.27506 -27.88509 -27.44231 -26.96605 -23.62325 -22.59384 -21.40385 -20.92897 -19.93329 -19.64764 -18.80129 -18.07398 -17.58975 -17.43346 -17.11370 -16.80953 -16.38105 -15.99353 -15.79957 -15.21216 -14.99811 -14.87111 -14.66461 -14.62025 -14.37052 -14.12962 -13.82493 -13.75272 -13.59597 -13.39297 -13.37386 -13.29372 -13.11026 -13.02930 -13.00989 -12.65454 -12.52304 -12.32181 -12.09808 -11.87703 -11.19462 -11.01260 -10.89074 -10.60499 -10.15328 -9.69276 -9.46086 -9.14712 -9.03386 -8.53729 -6.25827 0.87034 0.94876 1.30275 1.44229 1.49754 1.53909 1.54617 2.02471 2.22477 2.26189 2.36121 2.52669 2.69712 2.83914 3.76881 3.83226 3.91553 3.98365 4.08623 4.18288 4.24894 4.27645 4.37605 4.39499 4.45553 4.53986 4.65835 4.69374 4.73973 4.81026 4.88756 4.92169 4.95218 5.02321 5.16837 5.26016 5.31936 5.48390 5.64929 5.68114 5.84251 6.00110 6.08276 6.40823 6.48783 6.69869 6.90157 7.16342 7.29949 8.59427 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010489 B = 0.003497 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2668.852363 B = 8004.262076 C = 9579.209243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.152 4.152 3 C -0.011 4.011 4 N -0.537 5.537 5 H 0.436 0.564 6 C 0.054 3.946 7 C -0.263 4.263 8 C 0.587 3.413 9 O -0.580 6.580 10 N -0.611 5.611 11 C 0.067 3.933 12 C 0.113 3.887 13 C 0.122 3.878 14 H 0.079 0.921 15 C -0.157 4.157 16 N -0.710 5.710 17 C 0.536 3.464 18 O -0.558 6.558 19 C -0.112 4.112 20 S -0.157 6.157 21 C -0.536 4.536 22 H 0.054 0.946 23 C 0.047 3.953 24 N -0.918 5.918 25 Si 0.918 3.082 26 H -0.261 1.261 27 H -0.255 1.255 28 H -0.235 1.235 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.198 0.802 33 H 0.194 0.806 34 H 0.055 0.945 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.134 0.866 39 H 0.062 0.938 40 H 0.037 0.963 41 H 0.098 0.902 42 H 0.410 0.590 43 H 0.099 0.901 44 H 0.095 0.905 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.300 6.495 29.896 30.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.158 4.158 3 C -0.140 4.140 4 N -0.132 5.132 5 H 0.276 0.724 6 C -0.083 4.083 7 C -0.273 4.273 8 C 0.379 3.621 9 O -0.462 6.462 10 N -0.342 5.342 11 C -0.074 4.074 12 C -0.010 4.010 13 C 0.017 3.983 14 H 0.097 0.903 15 C -0.215 4.215 16 N -0.367 5.367 17 C 0.321 3.679 18 O -0.437 6.437 19 C -0.263 4.263 20 S 0.070 5.930 21 C -0.684 4.684 22 H 0.072 0.928 23 C -0.159 4.159 24 N -0.555 5.555 25 Si 0.739 3.261 26 H -0.185 1.185 27 H -0.179 1.179 28 H -0.159 1.159 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.215 0.785 33 H 0.210 0.790 34 H 0.074 0.926 35 H 0.104 0.896 36 H 0.119 0.881 37 H 0.101 0.899 38 H 0.152 0.848 39 H 0.081 0.919 40 H 0.056 0.944 41 H 0.117 0.883 42 H 0.251 0.749 43 H 0.117 0.883 44 H 0.114 0.886 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.498 5.348 29.540 30.058 hybrid contribution -0.959 1.095 -1.127 1.840 sum 0.539 6.442 28.413 29.140 Atomic orbital electron populations 1.20125 0.89751 1.02242 1.01739 1.20767 0.95940 0.91225 1.07909 1.21986 0.82451 0.99898 1.09624 1.41573 1.08789 1.06445 1.56380 0.72427 1.22415 0.98328 0.84577 1.03022 1.20352 0.94377 0.92264 1.20345 1.17831 0.81895 0.85185 0.77159 1.90615 1.28765 1.81442 1.45361 1.47760 1.24709 1.08626 1.53057 1.22271 0.83994 1.03215 0.97963 1.21965 1.00892 0.79907 0.98206 1.21632 1.00672 0.92970 0.83008 0.90257 1.22087 1.01376 0.94868 1.03197 1.46340 1.30170 1.50760 1.09453 1.19794 0.82755 0.80468 0.84854 1.90641 1.28129 1.39861 1.85050 1.23239 1.03492 1.03963 0.95620 1.84428 1.37646 1.65870 1.05073 1.22478 1.14974 1.33835 0.97071 0.92785 1.25609 1.00468 0.95658 0.94135 1.70028 1.41626 1.41528 1.02363 0.85820 0.79864 0.79519 0.80848 1.18526 1.17881 1.15892 0.91423 0.90736 0.93305 0.78534 0.78975 0.92599 0.89600 0.88131 0.89936 0.84788 0.91853 0.94402 0.88303 0.74929 0.88266 0.88633 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.72 10.29 71.23 0.73 -0.98 16 2 C -0.15 -3.31 6.35 -18.51 -0.12 -3.42 16 3 C -0.01 -0.17 11.82 83.12 0.98 0.82 16 4 N -0.54 -6.38 5.90 -194.55 -1.15 -7.53 16 5 H 0.44 2.00 8.96 -92.71 -0.83 1.17 16 6 C 0.05 0.87 9.63 83.92 0.81 1.68 16 7 C -0.26 -6.03 5.59 -19.04 -0.11 -6.14 16 8 C 0.59 15.09 6.95 86.61 0.60 15.70 16 9 O -0.58 -18.73 13.01 -4.12 -0.05 -18.79 16 10 N -0.61 -11.31 2.77 -850.87 -2.36 -13.67 16 11 C 0.07 0.74 9.04 127.77 1.15 1.89 16 12 C 0.11 1.86 5.18 86.38 0.45 2.31 16 13 C 0.12 2.80 2.88 44.99 0.13 2.93 16 14 H 0.08 1.98 7.58 -2.38 -0.02 1.96 16 15 C -0.16 -3.20 9.48 71.98 0.68 -2.52 16 16 N -0.71 -22.06 4.48 -442.53 -1.98 -24.04 16 17 C 0.54 21.30 7.81 87.65 0.68 21.99 16 18 O -0.56 -25.08 15.52 -3.03 -0.05 -25.13 16 19 C -0.11 -5.00 6.16 71.23 0.44 -4.56 16 20 S -0.16 -8.44 18.55 -56.49 -1.05 -9.49 16 21 C -0.54 -33.12 10.04 67.95 0.68 -32.43 16 22 H 0.05 3.58 8.03 -2.91 -0.02 3.56 16 23 C 0.05 2.84 5.50 84.86 0.47 3.31 16 24 N -0.92 -57.67 13.97 21.65 0.30 -57.37 16 25 Si 0.92 46.06 27.74 68.60 1.90 47.97 16 26 H -0.26 -12.73 7.11 99.48 0.71 -12.02 16 27 H -0.25 -11.83 7.11 99.48 0.71 -11.12 16 28 H -0.24 -11.70 6.74 99.48 0.67 -11.03 16 29 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.05 1.31 7.00 -2.38 -0.02 1.30 16 32 H 0.20 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.19 2.22 6.09 -2.91 -0.02 2.20 16 34 H 0.06 0.65 7.29 -2.39 -0.02 0.63 16 35 H 0.09 0.81 5.88 -2.39 -0.01 0.79 16 36 H 0.10 0.56 7.83 -2.39 -0.02 0.54 16 37 H 0.08 1.54 7.48 -2.39 -0.02 1.52 16 38 H 0.13 1.10 7.86 -2.39 -0.02 1.08 16 39 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.41 13.17 5.65 -92.71 -0.52 12.65 16 43 H 0.10 4.31 8.14 -2.40 -0.02 4.29 16 44 H 0.10 4.21 8.14 -2.39 -0.02 4.19 16 45 H 0.28 16.03 8.31 -92.71 -0.77 15.26 16 Total: -1.00 -85.71 382.63 2.79 -82.92 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: -0.36 Total: 24.57 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 7.59 Total: 0.56 kcal Atomic # 7 Polarization: -97.42 SS G_CDS: -5.19 Total: -102.61 kcal Atomic # 8 Polarization: -43.81 SS G_CDS: -0.10 Total: -43.91 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.90 Total: 47.97 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.05 Total: -9.49 kcal Total: -85.71 2.79 -82.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735196442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.282 kcal (2) G-P(sol) polarization free energy of solvation -85.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds