Wall clock time and date at job start Tue Mar 31 2020 22:15:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50708 * 1
3 3 N 1.30172 * 126.80072 * 2 1
4 4 O 1.20923 * 111.60221 * 179.97438 * 3 2 1
5 5 C 1.34039 * 111.56657 * 0.02562 * 4 3 2
6 6 C 1.35446 * 106.44909 * 359.97438 * 5 4 3
7 7 C 1.50700 * 128.00725 * 180.02562 * 6 5 4
8 8 N 1.46902 * 109.46768 * 254.96594 * 7 6 5
9 9 C 1.46901 * 110.99824 * 74.81255 * 8 7 6
10 10 C 1.52995 * 109.47129 * 189.99976 * 9 8 7
11 11 N 1.46503 * 109.47292 * 179.97438 * 10 9 8
12 12 C 1.34776 * 119.99967 * 179.97438 * 11 10 9
13 13 O 1.21279 * 120.00546 * 359.97438 * 12 11 10
14 14 C 1.50706 * 119.99909 * 179.97438 * 12 11 10
15 15 S 1.81000 * 109.46989 * 179.97438 * 14 12 11
16 16 C 1.76209 * 99.99719 * 180.02562 * 15 14 12
17 17 H 1.07996 * 119.99867 * 359.97438 * 16 15 14
18 18 C 1.38796 * 119.99832 * 180.02562 * 16 15 14
19 19 N 1.31632 * 119.99942 * 180.02562 * 18 16 15
20 20 Si 1.86799 * 119.99992 * 359.97438 * 18 16 15
21 21 H 1.48501 * 109.46998 * 90.00555 * 20 18 16
22 22 H 1.48494 * 109.47244 * 210.00022 * 20 18 16
23 23 H 1.48496 * 109.47454 * 330.00481 * 20 18 16
24 24 C 1.46898 * 110.99806 * 198.75974 * 8 7 6
25 25 C 1.53001 * 117.49759 * 134.08223 * 24 8 7
26 26 C 1.52999 * 117.49986 * 65.45904 * 24 8 7
27 27 H 1.09000 * 109.46553 * 274.46661 * 1 2 3
28 28 H 1.08998 * 109.47233 * 34.46201 * 1 2 3
29 29 H 1.09006 * 109.46908 * 154.46601 * 1 2 3
30 30 H 1.07998 * 126.77381 * 180.25717 * 5 4 3
31 31 H 1.08995 * 109.47151 * 14.97072 * 7 6 5
32 32 H 1.09004 * 109.47258 * 134.96841 * 7 6 5
33 33 H 1.09005 * 109.47200 * 309.99680 * 9 8 7
34 34 H 1.09001 * 109.47638 * 69.99301 * 9 8 7
35 35 H 1.08997 * 109.47005 * 299.99642 * 10 9 8
36 36 H 1.09001 * 109.47429 * 59.99744 * 10 9 8
37 37 H 0.96998 * 119.99653 * 359.97438 * 11 10 9
38 38 H 1.08997 * 109.47164 * 300.00099 * 14 12 11
39 39 H 1.09001 * 109.46791 * 59.99907 * 14 12 11
40 40 H 0.96993 * 120.00086 * 180.02562 * 19 18 16
41 41 H 1.09002 * 115.55325 * 279.78283 * 24 8 7
42 42 H 1.09000 * 117.50012 * 359.97438 * 25 24 8
43 43 H 1.08994 * 117.50370 * 145.02485 * 25 24 8
44 44 H 1.08996 * 117.50405 * 214.97785 * 26 24 8
45 45 H 1.09002 * 117.49681 * 359.97396 * 26 24 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.2869 1.0423 0.0000
4 8 3.4538 0.7253 0.0005
5 6 3.6025 -0.6068 0.0004
6 6 2.3540 -1.1321 0.0003
7 6 1.9591 -2.5864 0.0006
8 7 1.4844 -2.9652 -1.3370
9 6 2.6067 -3.1009 -2.2750
10 6 2.0665 -3.2479 -3.6988
11 7 3.1858 -3.3827 -4.6344
12 6 2.9482 -3.5262 -5.9533
13 8 1.8078 -3.5443 -6.3656
14 6 4.0996 -3.6642 -6.9157
15 16 3.4604 -3.8398 -8.6000
16 6 4.9752 -3.9794 -9.4891
17 1 5.9166 -3.9426 -8.9611
18 6 4.9586 -4.1354 -10.8682
19 7 6.0902 -4.2401 -11.5324
20 14 3.3303 -4.1983 -11.7815
21 1 2.9337 -2.8242 -12.1814
22 1 3.4748 -5.0441 -12.9934
23 1 2.2879 -4.7763 -10.8958
24 6 0.6906 -4.2001 -1.2837
25 6 -0.6312 -4.2240 -2.0539
26 6 -0.6375 -4.1541 -0.5255
27 1 -0.3632 0.0800 1.0246
28 1 -0.3633 0.8473 -0.5815
29 1 -0.3633 -0.9274 -0.4430
30 1 4.5339 -1.1534 0.0046
31 1 2.8219 -3.1971 0.2664
32 1 1.1628 -2.7466 0.7276
33 1 3.2388 -2.2148 -2.2160
34 1 3.1925 -3.9828 -2.0157
35 1 1.4345 -4.1340 -3.7579
36 1 1.4809 -2.3660 -3.9582
37 1 4.0979 -3.3686 -4.3046
38 1 4.7307 -2.7775 -6.8568
39 1 4.6862 -4.5456 -6.6564
40 1 6.0787 -4.3488 -12.4962
41 1 1.2640 -5.1260 -1.2388
42 1 -0.9120 -3.3233 -2.5998
43 1 -0.9276 -5.1657 -2.5158
44 1 -0.9380 -5.0498 0.0181
45 1 -0.9220 -3.2076 -0.0658
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001753151289.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:15:04
Heat of formation + Delta-G solvation = 55.414303 kcal
Electronic energy + Delta-G solvation = -26392.094417 eV
Core-core repulsion = 22540.340447 eV
Total energy + Delta-G solvation = -3851.753970 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-45.22981 -39.60355 -38.85169 -35.86099 -35.17602 -33.90664 -32.43975 -32.17566
-30.35044 -28.99148 -28.38081 -25.98094 -25.57804 -23.03986 -22.73852 -21.83705
-21.61314 -20.77255 -20.31487 -17.93941 -17.86293 -17.71502 -16.79171 -16.40536
-16.06919 -16.01794 -15.32742 -15.17530 -14.95768 -14.39938 -14.33153 -13.99470
-13.73419 -13.63375 -13.47010 -13.19765 -13.18146 -12.79685 -12.73803 -12.44607
-12.19092 -11.87455 -11.74738 -11.68686 -11.33166 -11.26450 -11.00655 -10.75680
-10.62554 -10.59918 -10.14279 -9.86754 -9.83217 -9.53087 -9.01799 -8.95354
-8.87229 -8.50004 -6.91749 -6.28984 -4.00688 1.14506 1.85141 2.72239
2.92245 2.98581 3.13515 3.33461 3.39825 3.47973 3.51017 3.74584
3.91257 4.18831 4.33305 4.35743 4.52437 4.56351 4.63962 4.69803
4.71842 4.74929 4.94418 5.01491 5.10109 5.11258 5.14810 5.17310
5.19650 5.29330 5.32852 5.34979 5.42344 5.52779 5.67635 5.70768
5.79400 5.84208 5.87267 5.88068 6.00743 6.41196 6.52100 6.65450
7.59464 7.94128 7.98188 8.41460 8.49423 9.17258 10.80251
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.015665 B = 0.002198 C = 0.002045
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1787.035009 B =12735.498563 C =13691.957799
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 C 0.038 3.962
3 N -0.369 5.369
4 O 0.098 5.902
5 C -0.056 4.056
6 C -0.193 4.193
7 C 0.136 3.864
8 N -0.503 5.503
9 C 0.049 3.951
10 C 0.128 3.872
11 N -0.738 5.738
12 C 0.531 3.469
13 O -0.518 6.518
14 C -0.124 4.124
15 S -0.142 6.142
16 C -0.521 4.521
17 H 0.088 0.912
18 C 0.095 3.905
19 N -0.881 5.881
20 Si 0.857 3.143
21 H -0.267 1.267
22 H -0.274 1.274
23 H -0.235 1.235
24 C -0.001 4.001
25 C -0.157 4.157
26 C -0.172 4.172
27 H 0.075 0.925
28 H 0.075 0.925
29 H 0.088 0.912
30 H 0.213 0.787
31 H 0.052 0.948
32 H 0.092 0.908
33 H 0.080 0.920
34 H 0.044 0.956
35 H 0.069 0.931
36 H 0.071 0.929
37 H 0.397 0.603
38 H 0.097 0.903
39 H 0.097 0.903
40 H 0.271 0.729
41 H 0.091 0.909
42 H 0.103 0.897
43 H 0.097 0.903
44 H 0.095 0.905
45 H 0.098 0.902
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.647 2.127 30.355 31.634
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.122 4.122
3 N -0.075 5.075
4 O 0.034 5.966
5 C -0.138 4.138
6 C -0.197 4.197
7 C 0.008 3.992
8 N -0.228 5.228
9 C -0.079 4.079
10 C 0.003 3.997
11 N -0.393 5.393
12 C 0.317 3.683
13 O -0.392 6.392
14 C -0.274 4.274
15 S 0.085 5.915
16 C -0.669 4.669
17 H 0.106 0.894
18 C -0.113 4.113
19 N -0.517 5.517
20 Si 0.682 3.318
21 H -0.192 1.192
22 H -0.200 1.200
23 H -0.159 1.159
24 C -0.110 4.110
25 C -0.195 4.195
26 C -0.209 4.209
27 H 0.094 0.906
28 H 0.094 0.906
29 H 0.107 0.893
30 H 0.230 0.770
31 H 0.070 0.930
32 H 0.110 0.890
33 H 0.098 0.902
34 H 0.062 0.938
35 H 0.088 0.912
36 H 0.090 0.910
37 H 0.231 0.769
38 H 0.115 0.885
39 H 0.115 0.885
40 H 0.081 0.919
41 H 0.109 0.891
42 H 0.122 0.878
43 H 0.115 0.885
44 H 0.114 0.886
45 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges -10.987 3.770 29.323 31.540
hybrid contribution 1.990 -1.486 0.280 2.499
sum -8.997 2.285 29.602 31.024
Atomic orbital electron populations
1.20186 0.85991 1.04354 1.02846 1.23463 0.99044 0.88053 1.01614
1.73874 0.89420 1.24294 1.19924 1.84842 1.21649 1.22801 1.67305
1.25824 1.00610 0.83991 1.03413 1.21117 0.92101 0.97288 1.09209
1.20185 0.99974 0.88332 0.90696 1.61534 1.22337 1.31422 1.07463
1.22254 0.92335 1.01244 0.92054 1.21138 0.89217 1.02801 0.86501
1.45879 1.09659 1.76919 1.06823 1.20248 0.90656 0.75400 0.81987
1.90703 1.23068 1.48073 1.77336 1.23275 0.99369 1.05643 0.99148
1.84800 1.14134 1.95967 0.96637 1.22317 0.91706 1.57876 0.94976
0.89396 1.24717 0.96896 0.93216 0.96517 1.69937 1.25809 1.47489
1.08485 0.86730 0.84644 0.79623 0.80834 1.19195 1.19953 1.15909
1.22446 0.89177 0.91753 1.07582 1.23102 0.98560 1.03915 0.93878
1.23066 0.99119 1.03295 0.95439 0.90624 0.90637 0.89339 0.77024
0.92973 0.88958 0.90152 0.93793 0.91241 0.91028 0.76900 0.88515
0.88503 0.91942 0.89140 0.87831 0.88477 0.88615 0.88322
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.54 10.39 36.01 0.37 -0.16 16
2 C 0.04 0.35 7.33 -82.10 -0.60 -0.26 16
3 N -0.37 -4.09 12.07 33.42 0.40 -3.69 16
4 O 0.10 0.93 11.20 17.18 0.19 1.13 16
5 C -0.06 -0.36 11.88 29.74 0.35 -0.01 16
6 C -0.19 -1.40 5.13 -104.42 -0.54 -1.93 16
7 C 0.14 0.77 5.40 -4.97 -0.03 0.74 16
8 N -0.50 -3.51 4.56 -228.08 -1.04 -4.55 16
9 C 0.05 0.37 4.90 -3.83 -0.02 0.36 16
10 C 0.13 1.41 5.57 -4.04 -0.02 1.39 16
11 N -0.74 -9.14 5.56 -60.29 -0.33 -9.48 16
12 C 0.53 9.39 7.85 -10.98 -0.09 9.30 16
13 O -0.52 -11.21 15.86 5.56 0.09 -11.12 16
14 C -0.12 -2.37 6.16 36.01 0.22 -2.15 16
15 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16
16 C -0.52 -15.02 10.04 30.94 0.31 -14.71 16
17 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16
18 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16
19 N -0.88 -26.60 13.97 55.49 0.78 -25.83 16
20 Si 0.86 21.85 27.74 -169.99 -4.71 17.13 16
21 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16
22 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16
23 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16
24 C 0.00 -0.01 4.21 -67.71 -0.28 -0.29 16
25 C -0.16 -1.14 9.67 -26.73 -0.26 -1.40 16
26 C -0.17 -0.94 9.63 -26.73 -0.26 -1.20 16
27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16
28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16
29 H 0.09 0.57 8.02 -51.93 -0.42 0.15 16
30 H 0.21 0.54 8.06 -52.49 -0.42 0.11 16
31 H 0.05 0.24 8.01 -51.93 -0.42 -0.18 16
32 H 0.09 0.46 7.09 -51.93 -0.37 0.09 16
33 H 0.08 0.60 7.07 -51.93 -0.37 0.23 16
34 H 0.04 0.29 8.11 -51.93 -0.42 -0.13 16
35 H 0.07 0.84 6.82 -51.93 -0.35 0.48 16
36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16
37 H 0.40 3.68 8.47 -40.82 -0.35 3.34 16
38 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16
39 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16
40 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16
41 H 0.09 0.59 8.13 -51.93 -0.42 0.17 16
42 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16
43 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16
44 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16
45 H 0.10 0.51 7.84 -51.93 -0.41 0.10 16
LS Contribution 393.19 15.07 5.93 5.93
Total: -1.00 -35.61 393.19 -8.53 -44.13
By element:
Atomic # 1 Polarization: 6.48 SS G_CDS: -6.90 Total: -0.42 kcal
Atomic # 6 Polarization: -6.70 SS G_CDS: -0.93 Total: -7.63 kcal
Atomic # 7 Polarization: -43.35 SS G_CDS: -0.20 Total: -43.55 kcal
Atomic # 8 Polarization: -10.28 SS G_CDS: 0.28 Total: -10.00 kcal
Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.13 kcal
Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal
Total LS contribution 5.93 Total: 5.93 kcal
Total: -35.61 -8.53 -44.13 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001753151289.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 99.548 kcal
(2) G-P(sol) polarization free energy of solvation -35.606 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.942 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.134 kcal
(6) G-S(sol) free energy of system = (1) + (5) 55.414 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds