Wall clock time and date at job start Tue Mar 31 2020 22:15:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50708 * 1
3 3 N 1.30172 * 126.80072 * 2 1
4 4 O 1.20923 * 111.60221 * 179.97438 * 3 2 1
5 5 C 1.34039 * 111.56657 * 0.02562 * 4 3 2
6 6 C 1.35446 * 106.44909 * 359.97438 * 5 4 3
7 7 C 1.50700 * 128.00725 * 180.02562 * 6 5 4
8 8 N 1.46902 * 109.46768 * 254.96594 * 7 6 5
9 9 C 1.46901 * 110.99824 * 74.81255 * 8 7 6
10 10 C 1.52995 * 109.47129 * 189.99976 * 9 8 7
11 11 N 1.46503 * 109.47292 * 179.97438 * 10 9 8
12 12 C 1.34776 * 119.99967 * 179.97438 * 11 10 9
13 13 O 1.21279 * 120.00546 * 359.97438 * 12 11 10
14 14 C 1.50706 * 119.99909 * 179.97438 * 12 11 10
15 15 S 1.81000 * 109.46989 * 179.97438 * 14 12 11
16 16 C 1.76209 * 99.99719 * 180.02562 * 15 14 12
17 17 H 1.07996 * 119.99867 * 359.97438 * 16 15 14
18 18 C 1.38796 * 119.99832 * 180.02562 * 16 15 14
19 19 N 1.31632 * 119.99942 * 180.02562 * 18 16 15
20 20 Si 1.86799 * 119.99992 * 359.97438 * 18 16 15
21 21 H 1.48501 * 109.46998 * 90.00555 * 20 18 16
22 22 H 1.48494 * 109.47244 * 210.00022 * 20 18 16
23 23 H 1.48496 * 109.47454 * 330.00481 * 20 18 16
24 24 C 1.46898 * 110.99806 * 198.75974 * 8 7 6
25 25 C 1.53001 * 117.49759 * 134.08223 * 24 8 7
26 26 C 1.52999 * 117.49986 * 65.45904 * 24 8 7
27 27 H 1.09000 * 109.46553 * 274.46661 * 1 2 3
28 28 H 1.08998 * 109.47233 * 34.46201 * 1 2 3
29 29 H 1.09006 * 109.46908 * 154.46601 * 1 2 3
30 30 H 1.07998 * 126.77381 * 180.25717 * 5 4 3
31 31 H 1.08995 * 109.47151 * 14.97072 * 7 6 5
32 32 H 1.09004 * 109.47258 * 134.96841 * 7 6 5
33 33 H 1.09005 * 109.47200 * 309.99680 * 9 8 7
34 34 H 1.09001 * 109.47638 * 69.99301 * 9 8 7
35 35 H 1.08997 * 109.47005 * 299.99642 * 10 9 8
36 36 H 1.09001 * 109.47429 * 59.99744 * 10 9 8
37 37 H 0.96998 * 119.99653 * 359.97438 * 11 10 9
38 38 H 1.08997 * 109.47164 * 300.00099 * 14 12 11
39 39 H 1.09001 * 109.46791 * 59.99907 * 14 12 11
40 40 H 0.96993 * 120.00086 * 180.02562 * 19 18 16
41 41 H 1.09002 * 115.55325 * 279.78283 * 24 8 7
42 42 H 1.09000 * 117.50012 * 359.97438 * 25 24 8
43 43 H 1.08994 * 117.50370 * 145.02485 * 25 24 8
44 44 H 1.08996 * 117.50405 * 214.97785 * 26 24 8
45 45 H 1.09002 * 117.49681 * 359.97396 * 26 24 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.2869 1.0423 0.0000
4 8 3.4538 0.7253 0.0005
5 6 3.6025 -0.6068 0.0004
6 6 2.3540 -1.1321 0.0003
7 6 1.9591 -2.5864 0.0006
8 7 1.4844 -2.9652 -1.3370
9 6 2.6067 -3.1009 -2.2750
10 6 2.0665 -3.2479 -3.6988
11 7 3.1858 -3.3827 -4.6344
12 6 2.9482 -3.5262 -5.9533
13 8 1.8078 -3.5443 -6.3656
14 6 4.0996 -3.6642 -6.9157
15 16 3.4604 -3.8398 -8.6000
16 6 4.9752 -3.9794 -9.4891
17 1 5.9166 -3.9426 -8.9611
18 6 4.9586 -4.1354 -10.8682
19 7 6.0902 -4.2401 -11.5324
20 14 3.3303 -4.1983 -11.7815
21 1 2.9337 -2.8242 -12.1814
22 1 3.4748 -5.0441 -12.9934
23 1 2.2879 -4.7763 -10.8958
24 6 0.6906 -4.2001 -1.2837
25 6 -0.6312 -4.2240 -2.0539
26 6 -0.6375 -4.1541 -0.5255
27 1 -0.3632 0.0800 1.0246
28 1 -0.3633 0.8473 -0.5815
29 1 -0.3633 -0.9274 -0.4430
30 1 4.5339 -1.1534 0.0046
31 1 2.8219 -3.1971 0.2664
32 1 1.1628 -2.7466 0.7276
33 1 3.2388 -2.2148 -2.2160
34 1 3.1925 -3.9828 -2.0157
35 1 1.4345 -4.1340 -3.7579
36 1 1.4809 -2.3660 -3.9582
37 1 4.0979 -3.3686 -4.3046
38 1 4.7307 -2.7775 -6.8568
39 1 4.6862 -4.5456 -6.6564
40 1 6.0787 -4.3488 -12.4962
41 1 1.2640 -5.1260 -1.2388
42 1 -0.9120 -3.3233 -2.5998
43 1 -0.9276 -5.1657 -2.5158
44 1 -0.9380 -5.0498 0.0181
45 1 -0.9220 -3.2076 -0.0658
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001753151289.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:15:03
Heat of formation + Delta-G solvation = 29.995528 kcal
Electronic energy + Delta-G solvation = -26393.196658 eV
Core-core repulsion = 22540.340447 eV
Total energy + Delta-G solvation = -3852.856211 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 339.140 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-45.85454 -40.73146 -39.64822 -36.44005 -36.14123 -34.68879 -34.64337 -32.85604
-31.54966 -29.64042 -29.32262 -27.85429 -26.58000 -23.81378 -23.24929 -22.42445
-22.15838 -21.87203 -21.10496 -19.88357 -18.54546 -18.30425 -17.93796 -17.44337
-17.11394 -16.96516 -16.86859 -16.24829 -16.04897 -15.61741 -15.10268 -14.92979
-14.86448 -14.79751 -14.45961 -14.18596 -13.99157 -13.75126 -13.66985 -13.34714
-13.28802 -13.02900 -12.81361 -12.75815 -12.58463 -12.42219 -12.28285 -11.92157
-11.86584 -11.28891 -11.17349 -11.12989 -11.03419 -10.74912 -10.53346 -10.37944
-10.13941 -9.35904 -8.99752 -8.51699 -6.22372 0.61607 0.98516 1.25285
1.31315 1.46699 1.55467 1.56617 2.15312 2.25177 2.46431 2.69564
2.86582 2.91109 2.94579 3.34996 3.67979 3.79820 3.87871 3.99966
4.03380 4.11228 4.13119 4.20155 4.24221 4.42527 4.47135 4.48545
4.56481 4.62956 4.68146 4.69318 4.83508 4.87266 4.89644 4.94816
4.98609 5.04543 5.17076 5.30521 5.36689 5.37766 5.70815 5.96434
6.11506 6.11548 6.46525 6.93682 7.19678 7.40292 8.60625
Molecular weight = 339.14amu
Principal moments of inertia in cm(-1)
A = 0.015665 B = 0.002198 C = 0.002045
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1787.035009 B =12735.498563 C =13691.957799
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 C 0.023 3.977
3 N -0.410 5.410
4 O 0.080 5.920
5 C -0.045 4.045
6 C -0.201 4.201
7 C 0.141 3.859
8 N -0.515 5.515
9 C 0.059 3.941
10 C 0.132 3.868
11 N -0.711 5.711
12 C 0.535 3.465
13 O -0.563 6.563
14 C -0.110 4.110
15 S -0.179 6.179
16 C -0.527 4.527
17 H 0.064 0.936
18 C 0.045 3.955
19 N -0.917 5.917
20 Si 0.914 3.086
21 H -0.264 1.264
22 H -0.259 1.259
23 H -0.237 1.237
24 C 0.000 4.000
25 C -0.177 4.177
26 C -0.153 4.153
27 H 0.090 0.910
28 H 0.064 0.936
29 H 0.093 0.907
30 H 0.253 0.747
31 H 0.074 0.926
32 H 0.101 0.899
33 H 0.086 0.914
34 H 0.065 0.935
35 H 0.061 0.939
36 H 0.048 0.952
37 H 0.417 0.583
38 H 0.113 0.887
39 H 0.116 0.884
40 H 0.277 0.723
41 H 0.098 0.902
42 H 0.084 0.916
43 H 0.093 0.907
44 H 0.110 0.890
45 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.581 1.207 32.575 33.708
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.136 4.136
3 N -0.119 5.119
4 O 0.019 5.981
5 C -0.127 4.127
6 C -0.205 4.205
7 C 0.014 3.986
8 N -0.239 5.239
9 C -0.069 4.069
10 C 0.008 3.992
11 N -0.365 5.365
12 C 0.320 3.680
13 O -0.442 6.442
14 C -0.261 4.261
15 S 0.048 5.952
16 C -0.675 4.675
17 H 0.082 0.918
18 C -0.160 4.160
19 N -0.555 5.555
20 Si 0.736 3.264
21 H -0.188 1.188
22 H -0.183 1.183
23 H -0.161 1.161
24 C -0.108 4.108
25 C -0.215 4.215
26 C -0.190 4.190
27 H 0.108 0.892
28 H 0.083 0.917
29 H 0.112 0.888
30 H 0.269 0.731
31 H 0.092 0.908
32 H 0.119 0.881
33 H 0.105 0.895
34 H 0.083 0.917
35 H 0.079 0.921
36 H 0.066 0.934
37 H 0.254 0.746
38 H 0.131 0.869
39 H 0.135 0.865
40 H 0.086 0.914
41 H 0.115 0.885
42 H 0.102 0.898
43 H 0.112 0.888
44 H 0.128 0.872
45 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges -10.872 2.852 31.597 33.536
hybrid contribution 2.019 -1.183 -0.252 2.353
sum -8.853 1.670 31.345 32.614
Atomic orbital electron populations
1.20221 0.85175 1.04148 1.03625 1.23926 0.99936 0.88632 1.01061
1.73875 0.90217 1.25736 1.22060 1.84789 1.21161 1.24461 1.67677
1.26594 1.01980 0.82877 1.01206 1.21337 0.91978 0.97646 1.09561
1.20227 1.01154 0.87388 0.89809 1.61427 1.22375 1.31835 1.08283
1.22132 0.92546 1.02474 0.89720 1.21167 0.88510 1.01321 0.88219
1.45609 1.11367 1.74434 1.05124 1.19961 0.89262 0.75413 0.83373
1.90696 1.24432 1.50655 1.78373 1.23262 1.00162 1.07380 0.95277
1.84756 1.13150 1.96175 1.01131 1.22456 0.92235 1.57287 0.95511
0.91820 1.25559 1.00014 0.92990 0.97467 1.70012 1.27714 1.48578
1.09170 0.85874 0.80660 0.79925 0.79967 1.18836 1.18310 1.16056
1.22475 0.89178 0.91804 1.07352 1.23039 1.00235 1.02892 0.95302
1.23110 0.97808 1.04160 0.93933 0.89185 0.91656 0.88789 0.73130
0.90793 0.88129 0.89530 0.91689 0.92096 0.93350 0.74572 0.86853
0.86549 0.91372 0.88457 0.89760 0.88836 0.87188 0.87878
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.00 10.39 71.24 0.74 -0.26 16
2 C 0.02 0.41 7.33 43.58 0.32 0.73 16
3 N -0.41 -8.99 12.07 -49.56 -0.60 -9.59 16
4 O 0.08 1.46 11.20 71.64 0.80 2.26 16
5 C -0.04 -0.46 11.88 67.17 0.80 0.34 16
6 C -0.20 -2.42 5.13 -19.74 -0.10 -2.53 16
7 C 0.14 1.11 5.40 85.56 0.46 1.58 16
8 N -0.51 -5.84 4.56 -875.52 -3.99 -9.83 16
9 C 0.06 0.72 4.90 86.30 0.42 1.14 16
10 C 0.13 2.70 5.57 86.38 0.48 3.18 16
11 N -0.71 -15.94 5.56 -463.06 -2.57 -18.51 16
12 C 0.53 18.14 7.85 87.66 0.69 18.83 16
13 O -0.56 -24.27 15.86 -3.03 -0.05 -24.32 16
14 C -0.11 -4.05 6.16 71.24 0.44 -3.61 16
15 S -0.18 -9.02 18.55 -56.49 -1.05 -10.07 16
16 C -0.53 -30.60 10.04 67.95 0.68 -29.92 16
17 H 0.06 3.88 8.03 -2.91 -0.02 3.85 16
18 C 0.05 2.65 5.50 84.86 0.47 3.11 16
19 N -0.92 -55.78 13.97 21.65 0.30 -55.48 16
20 Si 0.91 45.15 27.74 68.60 1.90 47.05 16
21 H -0.26 -12.76 7.11 99.48 0.71 -12.06 16
22 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16
23 H -0.24 -11.67 6.74 99.48 0.67 -11.00 16
24 C 0.00 0.00 4.21 44.92 0.19 0.19 16
25 C -0.18 -2.45 9.67 30.60 0.30 -2.15 16
26 C -0.15 -1.34 9.63 30.59 0.29 -1.04 16
27 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16
28 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16
29 H 0.09 1.12 8.02 -2.38 -0.02 1.10 16
30 H 0.25 0.17 8.06 -2.91 -0.02 0.15 16
31 H 0.07 0.31 8.01 -2.39 -0.02 0.29 16
32 H 0.10 0.66 7.09 -2.38 -0.02 0.64 16
33 H 0.09 0.97 7.07 -2.38 -0.02 0.96 16
34 H 0.07 0.56 8.11 -2.39 -0.02 0.54 16
35 H 0.06 1.40 6.82 -2.39 -0.02 1.38 16
36 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16
37 H 0.42 6.23 8.47 -92.71 -0.79 5.45 16
38 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16
39 H 0.12 3.87 8.14 -2.40 -0.02 3.85 16
40 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16
41 H 0.10 0.96 8.13 -2.39 -0.02 0.94 16
42 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16
43 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16
44 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16
45 H 0.10 0.82 7.84 -2.39 -0.02 0.81 16
Total: -1.00 -79.26 393.19 1.11 -78.15
By element:
Atomic # 1 Polarization: 10.58 SS G_CDS: 0.18 Total: 10.76 kcal
Atomic # 6 Polarization: -16.59 SS G_CDS: 6.18 Total: -10.42 kcal
Atomic # 7 Polarization: -86.56 SS G_CDS: -6.86 Total: -93.41 kcal
Atomic # 8 Polarization: -22.81 SS G_CDS: 0.75 Total: -22.06 kcal
Atomic # 14 Polarization: 45.15 SS G_CDS: 1.90 Total: 47.05 kcal
Atomic # 16 Polarization: -9.02 SS G_CDS: -1.05 Total: -10.07 kcal
Total: -79.26 1.11 -78.15 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001753151289.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 108.149 kcal
(2) G-P(sol) polarization free energy of solvation -79.261 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.888 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.107 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.153 kcal
(6) G-S(sol) free energy of system = (1) + (5) 29.996 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds