Wall clock time and date at job start Tue Mar 31 2020 22:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33813 * 124.52488 * 2 1 4 4 C 1.37471 * 115.10032 * 180.02562 * 3 2 1 5 5 C 1.50703 * 123.35012 * 179.97438 * 4 3 2 6 6 C 1.36649 * 113.29774 * 0.22558 * 4 3 2 7 7 C 1.46589 * 125.45662 * 179.77014 * 6 4 3 8 8 O 1.21702 * 119.99837 * 350.53077 * 7 6 4 9 9 N 1.34779 * 119.99855 * 170.53391 * 7 6 4 10 10 C 1.46506 * 119.99759 * 0.27556 * 9 7 6 11 11 C 1.46490 * 120.00094 * 180.27758 * 9 7 6 12 12 C 1.53005 * 109.47089 * 89.99844 * 11 9 7 13 13 N 1.46903 * 109.46796 * 179.97438 * 12 11 9 14 14 C 1.46904 * 110.99683 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.46901 * 180.02562 * 14 13 12 16 16 O 1.21296 * 120.00417 * 359.97438 * 15 14 13 17 17 N 1.34783 * 119.99983 * 180.02562 * 15 14 13 18 18 C 1.37098 * 119.99886 * 179.97438 * 17 15 14 19 19 H 1.07994 * 120.00306 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99400 * 180.02562 * 18 17 15 21 21 N 1.31407 * 120.00458 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99380 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47664 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47096 * 120.00022 * 22 20 18 25 25 H 1.48509 * 109.46914 * 239.99637 * 22 20 18 26 26 S 1.70623 * 124.52014 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.46927 * 90.00116 * 1 2 3 28 28 H 1.08998 * 109.47371 * 210.00359 * 1 2 3 29 29 H 1.08999 * 109.47014 * 330.00492 * 1 2 3 30 30 H 1.07997 * 122.45258 * 0.03291 * 3 2 1 31 31 H 1.08998 * 109.47402 * 90.01906 * 5 4 3 32 32 H 1.09000 * 109.47081 * 330.01892 * 5 4 3 33 33 H 1.09007 * 109.46999 * 210.02390 * 5 4 3 34 34 H 1.09004 * 109.46912 * 83.47842 * 10 9 7 35 35 H 1.08996 * 109.46910 * 203.47577 * 10 9 7 36 36 H 1.08995 * 109.47225 * 323.47824 * 10 9 7 37 37 H 1.08997 * 109.47328 * 209.99970 * 11 9 7 38 38 H 1.09007 * 109.47217 * 330.00120 * 11 9 7 39 39 H 1.08998 * 109.47045 * 299.99697 * 12 11 9 40 40 H 1.08998 * 109.46965 * 60.00252 * 12 11 9 41 41 H 1.00902 * 110.99964 * 56.04924 * 13 12 11 42 42 H 1.08999 * 109.47285 * 300.00443 * 14 13 12 43 43 H 1.08997 * 109.46915 * 60.00418 * 14 13 12 44 44 H 0.97001 * 119.99557 * 359.97438 * 17 15 14 45 45 H 0.97001 * 120.00488 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6215 0.8774 -0.0006 5 6 4.6450 1.9836 -0.0012 6 6 3.9492 -0.4493 -0.0060 7 6 5.3123 -0.9885 -0.0126 8 8 6.2599 -0.2450 -0.1871 9 7 5.5161 -2.3076 0.1744 10 6 4.3749 -3.2034 0.3784 11 6 6.8786 -2.8456 0.1739 12 6 7.4385 -2.8177 1.5975 13 7 8.8047 -3.3578 1.5970 14 6 9.3759 -3.3461 2.9504 15 6 10.7746 -3.9053 2.9101 16 8 11.2489 -4.2776 1.8576 17 7 11.4983 -3.9929 4.0437 18 6 12.7707 -4.5022 4.0071 19 1 13.1932 -4.8328 3.0699 20 6 13.5165 -4.5929 5.1760 21 7 13.0026 -4.1901 6.3164 22 14 15.2504 -5.2861 5.1260 23 1 15.5922 -5.6648 3.7314 24 1 16.2082 -4.2593 5.6095 25 1 15.3291 -6.4859 5.9977 26 16 2.4739 -1.4058 -0.0006 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.8430 2.0964 0.0005 31 1 4.8925 2.2502 1.0262 32 1 4.2381 2.8547 -0.5147 33 1 5.5447 1.6459 -0.5158 34 1 3.9584 -3.4871 -0.5882 35 1 4.7046 -4.0969 0.9083 36 1 3.6126 -2.6926 0.9666 37 1 6.8636 -3.8727 -0.1906 38 1 7.5087 -2.2385 -0.4763 39 1 7.4536 -1.7906 1.9620 40 1 6.8085 -3.4248 2.2476 41 1 9.3932 -2.8520 0.9521 42 1 9.4048 -2.3224 3.3237 43 1 8.7591 -3.9561 3.6103 44 1 11.1189 -3.6955 4.8855 45 1 13.5233 -4.2530 7.1323 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753194933.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:50 Heat of formation + Delta-G solvation = -35.546694 kcal Electronic energy + Delta-G solvation = -25972.641471 eV Core-core repulsion = 22116.943136 eV Total energy + Delta-G solvation = -3855.698335 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.30508 -38.53683 -38.20974 -36.34268 -35.03781 -33.80824 -33.05836 -31.22786 -30.29593 -28.69798 -27.74793 -27.21929 -25.67846 -23.97536 -22.44998 -22.29346 -20.83278 -19.22089 -18.46130 -18.34637 -17.85389 -16.50357 -16.23916 -16.14549 -15.67034 -15.47399 -15.01883 -14.58377 -14.44067 -14.17710 -13.90332 -13.74356 -13.70692 -13.46526 -13.38674 -13.29793 -13.20216 -13.14317 -12.88178 -12.27755 -12.18684 -12.12262 -11.91152 -11.71759 -11.50554 -11.48052 -11.13092 -10.98361 -10.82129 -10.32415 -10.20529 -10.02992 -9.49871 -9.14924 -8.93663 -8.58136 -8.43047 -8.06327 -7.93820 -6.39622 -3.80337 0.19790 1.15710 1.57377 2.04411 2.61728 2.94786 3.18189 3.28558 3.36186 3.93351 4.13916 4.23130 4.33833 4.44488 4.62827 4.73799 4.89702 4.90435 4.96451 5.01440 5.05488 5.18765 5.19417 5.23902 5.28249 5.30723 5.40727 5.50150 5.51281 5.69166 5.73700 5.77998 5.86925 5.88219 6.00859 6.07169 6.18920 6.25129 6.30872 7.04025 7.19081 7.57591 7.65407 7.88997 8.08807 8.63570 9.20118 9.56652 10.08085 10.78260 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027818 B = 0.001734 C = 0.001712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.299603 B =16142.813672 C =16354.557326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.218 4.218 3 C -0.157 4.157 4 C -0.011 4.011 5 C -0.111 4.111 6 C -0.283 4.283 7 C 0.590 3.410 8 O -0.522 6.522 9 N -0.611 5.611 10 C 0.062 3.938 11 C 0.120 3.880 12 C 0.045 3.955 13 N -0.666 5.666 14 C 0.052 3.948 15 C 0.442 3.558 16 O -0.583 6.583 17 N -0.564 5.564 18 C -0.298 4.298 19 H 0.104 0.896 20 C 0.021 3.979 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 S 0.217 5.783 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.139 0.861 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.032 0.968 40 H 0.071 0.929 41 H 0.351 0.649 42 H 0.044 0.956 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.832 8.239 -10.608 31.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.336 4.336 3 C -0.187 4.187 4 C -0.026 4.026 5 C -0.170 4.170 6 C -0.403 4.403 7 C 0.379 3.621 8 O -0.401 6.401 9 N -0.344 5.344 10 C -0.083 4.083 11 C -0.003 4.003 12 C -0.086 4.086 13 N -0.299 5.299 14 C -0.081 4.081 15 C 0.227 3.773 16 O -0.467 6.467 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.122 0.878 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 S 0.486 5.514 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.156 0.844 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.086 0.914 35 H 0.114 0.886 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.106 0.894 39 H 0.050 0.950 40 H 0.089 0.911 41 H 0.171 0.829 42 H 0.062 0.938 43 H 0.104 0.896 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -28.475 6.160 -11.191 31.209 hybrid contribution 0.789 2.341 0.936 2.642 sum -27.686 8.500 -10.255 30.723 Atomic orbital electron populations 1.20380 0.87718 1.03341 1.02931 1.24812 1.01981 1.00366 1.06489 1.19820 0.92114 0.99598 1.07184 1.19468 0.94775 0.93424 0.94913 1.20806 0.98288 0.94750 1.03128 1.24264 0.96652 0.97520 1.21866 1.17001 0.86869 0.81692 0.76550 1.90787 1.42353 1.57202 1.49722 1.47633 1.07830 1.06892 1.72022 1.22066 0.88489 0.95389 1.02403 1.21467 0.80991 1.00270 0.97549 1.22267 0.91339 0.98103 0.96855 1.60038 1.02078 1.59545 1.08254 1.21656 0.95808 0.99700 0.90887 1.19796 0.87060 0.85359 0.85080 1.90523 1.72251 1.53549 1.30343 1.41869 1.14270 1.55693 1.08271 1.19767 0.89578 1.37522 0.95942 0.87828 1.25269 1.00325 0.97716 0.94710 1.69620 1.38302 1.47587 0.98852 0.85794 0.81592 0.78350 0.78560 1.19201 1.20783 1.20765 1.83470 0.93272 1.05814 1.68799 0.90473 0.91131 0.90583 0.84354 0.90722 0.91623 0.88447 0.91392 0.88603 0.90663 0.89000 0.89371 0.95007 0.91100 0.82937 0.93797 0.89620 0.77461 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.39 10.31 36.00 0.37 -0.01 16 2 C -0.22 -1.59 6.28 -35.86 -0.23 -1.82 16 3 C -0.16 -1.31 9.82 -41.41 -0.41 -1.72 16 4 C -0.01 -0.11 5.90 -105.47 -0.62 -0.73 16 5 C -0.11 -1.10 9.68 36.01 0.35 -0.76 16 6 C -0.28 -3.03 6.22 -36.79 -0.23 -3.26 16 7 C 0.59 7.48 7.62 -12.89 -0.10 7.39 16 8 O -0.52 -8.19 13.82 5.19 0.07 -8.12 16 9 N -0.61 -6.48 2.87 -183.16 -0.53 -7.01 16 10 C 0.06 0.43 8.92 59.85 0.53 0.97 16 11 C 0.12 1.40 5.64 -4.04 -0.02 1.37 16 12 C 0.05 0.60 6.01 -3.82 -0.02 0.58 16 13 N -0.67 -11.17 6.13 -115.05 -0.70 -11.87 16 14 C 0.05 0.96 6.17 -4.98 -0.03 0.93 16 15 C 0.44 10.69 7.82 -10.98 -0.09 10.61 16 16 O -0.58 -16.13 15.78 5.54 0.09 -16.04 16 17 N -0.56 -14.61 5.29 -10.96 -0.06 -14.67 16 18 C -0.30 -8.47 9.68 -14.93 -0.14 -8.61 16 19 H 0.10 3.08 7.16 -52.49 -0.38 2.71 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.87 13.05 55.50 0.72 -24.15 16 22 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 S 0.22 1.57 17.86 -107.50 -1.92 -0.35 16 27 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.10 1.18 5.83 -51.93 -0.30 0.88 16 34 H 0.07 0.38 7.76 -51.93 -0.40 -0.02 16 35 H 0.10 0.55 8.02 -51.93 -0.42 0.13 16 36 H 0.08 0.49 4.64 -23.46 -0.11 0.38 16 37 H 0.09 0.96 8.07 -51.93 -0.42 0.54 16 38 H 0.09 1.16 7.42 -51.92 -0.39 0.77 16 39 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.35 6.17 8.43 -39.29 -0.33 5.84 16 42 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 44 H 0.39 9.70 7.90 -40.82 -0.32 9.38 16 45 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 386.10 15.07 5.82 5.82 Total: -1.00 -34.07 386.10 -8.69 -42.75 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -6.43 Total: 11.94 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -0.73 Total: 5.41 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: -0.56 Total: -57.69 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: 0.16 Total: -24.16 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -1.92 Total: -0.35 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.07 -8.69 -42.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753194933.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.207 kcal (2) G-P(sol) polarization free energy of solvation -34.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds