Wall clock time and date at job start Tue Mar 31 2020 22:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33813 * 124.52488 * 2 1 4 4 C 1.37471 * 115.10032 * 180.02562 * 3 2 1 5 5 C 1.50703 * 123.35012 * 179.97438 * 4 3 2 6 6 C 1.36649 * 113.29774 * 0.22558 * 4 3 2 7 7 C 1.46589 * 125.45662 * 179.77014 * 6 4 3 8 8 O 1.21702 * 119.99837 * 350.53077 * 7 6 4 9 9 N 1.34779 * 119.99855 * 170.53391 * 7 6 4 10 10 C 1.46506 * 119.99759 * 0.27556 * 9 7 6 11 11 C 1.46490 * 120.00094 * 180.27758 * 9 7 6 12 12 C 1.53005 * 109.47089 * 89.99844 * 11 9 7 13 13 N 1.46903 * 109.46796 * 179.97438 * 12 11 9 14 14 C 1.46904 * 110.99683 * 179.97438 * 13 12 11 15 15 C 1.50697 * 109.46901 * 180.02562 * 14 13 12 16 16 O 1.21296 * 120.00417 * 359.97438 * 15 14 13 17 17 N 1.34783 * 119.99983 * 180.02562 * 15 14 13 18 18 C 1.37098 * 119.99886 * 179.97438 * 17 15 14 19 19 H 1.07994 * 120.00306 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99400 * 180.02562 * 18 17 15 21 21 N 1.31407 * 120.00458 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99380 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47664 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47096 * 120.00022 * 22 20 18 25 25 H 1.48509 * 109.46914 * 239.99637 * 22 20 18 26 26 S 1.70623 * 124.52014 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.46927 * 90.00116 * 1 2 3 28 28 H 1.08998 * 109.47371 * 210.00359 * 1 2 3 29 29 H 1.08999 * 109.47014 * 330.00492 * 1 2 3 30 30 H 1.07997 * 122.45258 * 0.03291 * 3 2 1 31 31 H 1.08998 * 109.47402 * 90.01906 * 5 4 3 32 32 H 1.09000 * 109.47081 * 330.01892 * 5 4 3 33 33 H 1.09007 * 109.46999 * 210.02390 * 5 4 3 34 34 H 1.09004 * 109.46912 * 83.47842 * 10 9 7 35 35 H 1.08996 * 109.46910 * 203.47577 * 10 9 7 36 36 H 1.08995 * 109.47225 * 323.47824 * 10 9 7 37 37 H 1.08997 * 109.47328 * 209.99970 * 11 9 7 38 38 H 1.09007 * 109.47217 * 330.00120 * 11 9 7 39 39 H 1.08998 * 109.47045 * 299.99697 * 12 11 9 40 40 H 1.08998 * 109.46965 * 60.00252 * 12 11 9 41 41 H 1.00902 * 110.99964 * 56.04924 * 13 12 11 42 42 H 1.08999 * 109.47285 * 300.00443 * 14 13 12 43 43 H 1.08997 * 109.46915 * 60.00418 * 14 13 12 44 44 H 0.97001 * 119.99557 * 359.97438 * 17 15 14 45 45 H 0.97001 * 120.00488 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6215 0.8774 -0.0006 5 6 4.6450 1.9836 -0.0012 6 6 3.9492 -0.4493 -0.0060 7 6 5.3123 -0.9885 -0.0126 8 8 6.2599 -0.2450 -0.1871 9 7 5.5161 -2.3076 0.1744 10 6 4.3749 -3.2034 0.3784 11 6 6.8786 -2.8456 0.1739 12 6 7.4385 -2.8177 1.5975 13 7 8.8047 -3.3578 1.5970 14 6 9.3759 -3.3461 2.9504 15 6 10.7746 -3.9053 2.9101 16 8 11.2489 -4.2776 1.8576 17 7 11.4983 -3.9929 4.0437 18 6 12.7707 -4.5022 4.0071 19 1 13.1932 -4.8328 3.0699 20 6 13.5165 -4.5929 5.1760 21 7 13.0026 -4.1901 6.3164 22 14 15.2504 -5.2861 5.1260 23 1 15.5922 -5.6648 3.7314 24 1 16.2082 -4.2593 5.6095 25 1 15.3291 -6.4859 5.9977 26 16 2.4739 -1.4058 -0.0006 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.8430 2.0964 0.0005 31 1 4.8925 2.2502 1.0262 32 1 4.2381 2.8547 -0.5147 33 1 5.5447 1.6459 -0.5158 34 1 3.9584 -3.4871 -0.5882 35 1 4.7046 -4.0969 0.9083 36 1 3.6126 -2.6926 0.9666 37 1 6.8636 -3.8727 -0.1906 38 1 7.5087 -2.2385 -0.4763 39 1 7.4536 -1.7906 1.9620 40 1 6.8085 -3.4248 2.2476 41 1 9.3932 -2.8520 0.9521 42 1 9.4048 -2.3224 3.3237 43 1 8.7591 -3.9561 3.6103 44 1 11.1189 -3.6955 4.8855 45 1 13.5233 -4.2530 7.1323 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753194933.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:49 Heat of formation + Delta-G solvation = -59.855422 kcal Electronic energy + Delta-G solvation = -25973.695576 eV Core-core repulsion = 22116.943136 eV Total energy + Delta-G solvation = -3856.752440 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.18024 -40.17546 -39.15954 -37.46296 -36.31633 -35.75216 -33.65449 -33.28957 -31.41172 -29.43793 -28.52795 -28.21419 -27.06265 -25.56391 -23.54040 -22.89720 -21.72523 -21.05896 -19.93208 -19.23978 -19.06489 -17.93706 -17.23849 -17.11149 -16.85419 -16.61688 -16.45979 -15.96656 -15.63425 -15.36221 -15.11430 -14.85229 -14.78051 -14.38005 -14.32790 -14.12507 -13.91301 -13.84486 -13.72746 -13.62193 -13.54708 -13.37234 -12.97877 -12.80342 -12.76340 -12.54103 -12.41928 -12.39222 -12.12700 -12.11219 -11.52722 -11.40296 -10.95986 -10.41564 -10.03362 -9.97708 -9.55974 -9.46309 -9.19833 -8.47946 -5.97014 -0.49419 0.52254 0.96413 1.34582 1.36334 1.41683 1.56277 1.77942 2.02311 2.10271 2.29129 2.94615 3.18905 3.45521 3.57224 3.81382 3.97349 4.05196 4.08466 4.22708 4.25924 4.28433 4.43612 4.46821 4.47832 4.54552 4.55851 4.62676 4.71857 4.74702 4.75113 4.77338 4.89927 4.99452 5.12075 5.17387 5.33338 5.40218 5.42306 5.50492 5.80852 6.03978 6.20560 6.26605 6.57963 6.99911 7.10807 7.53593 8.08648 8.69737 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027818 B = 0.001734 C = 0.001712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.299603 B =16142.813672 C =16354.557326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.214 4.214 3 C -0.173 4.173 4 C -0.023 4.023 5 C -0.109 4.109 6 C -0.323 4.323 7 C 0.581 3.419 8 O -0.568 6.568 9 N -0.608 5.608 10 C 0.054 3.946 11 C 0.126 3.874 12 C 0.055 3.945 13 N -0.673 5.673 14 C 0.066 3.934 15 C 0.438 3.562 16 O -0.622 6.622 17 N -0.572 5.572 18 C -0.335 4.335 19 H 0.080 0.920 20 C -0.014 4.014 21 N -0.920 5.920 22 Si 0.995 3.005 23 H -0.273 1.273 24 H -0.271 1.271 25 H -0.269 1.269 26 S 0.272 5.728 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.154 0.846 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.114 0.886 36 H 0.082 0.918 37 H 0.110 0.890 38 H 0.067 0.933 39 H 0.018 0.982 40 H 0.090 0.910 41 H 0.344 0.656 42 H 0.059 0.941 43 H 0.110 0.890 44 H 0.396 0.604 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.326 7.470 -10.099 33.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.333 4.333 3 C -0.203 4.203 4 C -0.039 4.039 5 C -0.168 4.168 6 C -0.442 4.442 7 C 0.372 3.628 8 O -0.449 6.449 9 N -0.340 5.340 10 C -0.090 4.090 11 C 0.003 3.997 12 C -0.076 4.076 13 N -0.306 5.306 14 C -0.067 4.067 15 C 0.225 3.775 16 O -0.508 6.508 17 N -0.210 5.210 18 C -0.464 4.464 19 H 0.098 0.902 20 C -0.213 4.213 21 N -0.561 5.561 22 Si 0.819 3.181 23 H -0.198 1.198 24 H -0.196 1.196 25 H -0.195 1.195 26 S 0.542 5.458 27 H 0.108 0.892 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.171 0.829 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.133 0.867 36 H 0.099 0.901 37 H 0.128 0.872 38 H 0.085 0.915 39 H 0.036 0.964 40 H 0.108 0.892 41 H 0.162 0.838 42 H 0.077 0.923 43 H 0.127 0.873 44 H 0.230 0.770 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -31.024 5.373 -10.657 33.240 hybrid contribution 1.444 2.575 0.759 3.048 sum -29.580 7.947 -9.898 32.189 Atomic orbital electron populations 1.20528 0.85468 1.04541 1.04054 1.25301 1.03592 1.00161 1.04219 1.19932 0.91252 1.00876 1.08211 1.19677 0.95756 0.93387 0.95048 1.20735 0.97557 0.95672 1.02795 1.24270 0.97240 0.98636 1.24057 1.17413 0.87410 0.82042 0.75984 1.90757 1.43919 1.58383 1.51885 1.47693 1.08274 1.06818 1.71200 1.22353 0.87461 0.95327 1.03839 1.21320 0.81525 1.00760 0.96114 1.22267 0.89645 0.97383 0.98265 1.60066 1.03336 1.60036 1.07134 1.21529 0.92300 1.00435 0.92397 1.20793 0.88834 0.83933 0.83899 1.90491 1.73706 1.54983 1.31628 1.41932 1.13964 1.56060 1.09002 1.19732 0.91262 1.39769 0.95682 0.90226 1.26074 1.03903 0.97355 0.93992 1.69678 1.39703 1.47445 0.99306 0.84841 0.76842 0.78140 0.78313 1.19765 1.19628 1.19451 1.83113 0.90625 1.04610 1.67452 0.89234 0.89791 0.89588 0.82861 0.91025 0.89718 0.91138 0.89614 0.86736 0.90073 0.87233 0.91477 0.96384 0.89204 0.83825 0.92262 0.87250 0.76965 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.50 10.31 71.24 0.73 0.24 16 2 C -0.21 -2.59 6.28 24.68 0.15 -2.44 16 3 C -0.17 -2.65 9.82 21.08 0.21 -2.44 16 4 C -0.02 -0.47 5.90 -20.42 -0.12 -0.59 16 5 C -0.11 -2.29 9.68 71.24 0.69 -1.60 16 6 C -0.32 -6.82 6.22 24.08 0.15 -6.67 16 7 C 0.58 15.12 7.62 86.42 0.66 15.77 16 8 O -0.57 -19.06 13.82 -4.35 -0.06 -19.12 16 9 N -0.61 -12.50 2.87 -851.60 -2.45 -14.95 16 10 C 0.05 0.63 8.92 127.77 1.14 1.76 16 11 C 0.13 2.89 5.64 86.38 0.49 3.38 16 12 C 0.05 1.41 6.01 86.30 0.52 1.93 16 13 N -0.67 -22.35 6.13 -517.92 -3.17 -25.53 16 14 C 0.07 2.38 6.17 85.56 0.53 2.90 16 15 C 0.44 21.50 7.82 87.65 0.69 22.19 16 16 O -0.62 -35.32 15.78 -3.08 -0.05 -35.37 16 17 N -0.57 -30.12 5.29 -306.98 -1.62 -31.74 16 18 C -0.33 -19.40 9.68 84.04 0.81 -18.59 16 19 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 20 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 21 N -0.92 -50.31 13.05 21.66 0.28 -50.03 16 22 Si 1.00 43.50 29.55 68.60 2.03 45.52 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 24 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 26 S 0.27 3.32 17.86 -56.49 -1.01 2.32 16 27 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 29 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 31 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 1.88 5.83 -2.38 -0.01 1.86 16 34 H 0.09 0.72 7.76 -2.39 -0.02 0.70 16 35 H 0.11 0.93 8.02 -2.39 -0.02 0.92 16 36 H 0.08 0.86 4.64 -20.49 -0.10 0.76 16 37 H 0.11 2.13 8.07 -2.39 -0.02 2.11 16 38 H 0.07 1.84 7.42 -2.38 -0.02 1.83 16 39 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.34 12.35 8.43 -89.69 -0.76 11.59 16 42 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.11 3.46 8.14 -2.39 -0.02 3.44 16 44 H 0.40 19.79 7.90 -92.71 -0.73 19.05 16 45 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -75.91 386.10 0.52 -75.39 By element: Atomic # 1 Polarization: 38.47 SS G_CDS: -0.54 Total: 37.93 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: 7.11 Total: 15.59 kcal Atomic # 7 Polarization: -115.29 SS G_CDS: -6.96 Total: -122.25 kcal Atomic # 8 Polarization: -54.39 SS G_CDS: -0.11 Total: -54.49 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: 3.32 SS G_CDS: -1.01 Total: 2.32 kcal Total: -75.91 0.52 -75.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753194933.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.535 kcal (2) G-P(sol) polarization free energy of solvation -75.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds