Wall clock time and date at job start Tue Mar 31 2020 22:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34326 * 126.44299 * 2 1 4 4 N 1.34476 * 107.66865 * 179.76714 * 3 2 1 5 5 C 1.30258 * 108.69802 * 0.41871 * 4 3 2 6 6 C 1.50701 * 125.61675 * 179.83946 * 5 4 3 7 7 H 1.09002 * 109.47060 * 194.69427 * 6 5 4 8 8 C 1.52997 * 109.47212 * 74.69372 * 6 5 4 9 9 N 1.46896 * 109.47239 * 314.69581 * 6 5 4 10 10 C 1.47481 * 111.00019 * 275.96962 * 9 6 5 11 11 C 1.53509 * 87.93525 * 221.29989 * 10 9 6 12 12 C 1.52998 * 114.17365 * 139.67248 * 11 10 9 13 13 N 1.46497 * 109.47327 * 91.15471 * 12 11 10 14 14 C 1.34775 * 120.00385 * 180.02562 * 13 12 11 15 15 O 1.21281 * 119.99688 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00190 * 180.02562 * 14 13 12 17 17 S 1.81005 * 109.47003 * 179.97438 * 16 14 13 18 18 C 1.76202 * 99.99992 * 180.02562 * 17 16 14 19 19 H 1.07994 * 119.99887 * 359.97438 * 18 17 16 20 20 C 1.38801 * 119.99825 * 180.02562 * 18 17 16 21 21 N 1.31628 * 119.99898 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99807 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.47284 * 59.99814 * 22 20 18 24 24 H 1.48498 * 109.47253 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47163 * 299.99788 * 22 20 18 26 26 C 1.47480 * 111.00167 * 180.02562 * 9 6 5 27 27 O 1.33964 * 108.76151 * 359.57738 * 5 4 3 28 28 H 1.09000 * 109.47410 * 269.97769 * 1 2 3 29 29 H 1.09005 * 109.46949 * 29.97865 * 1 2 3 30 30 H 1.08997 * 109.47298 * 149.98156 * 1 2 3 31 31 H 1.08002 * 126.16388 * 0.02562 * 3 2 1 32 32 H 1.08998 * 109.47533 * 59.99628 * 8 6 5 33 33 H 1.08996 * 109.47853 * 179.97438 * 8 6 5 34 34 H 1.09002 * 109.47153 * 299.99998 * 8 6 5 35 35 H 1.09006 * 113.47701 * 336.06557 * 10 9 6 36 36 H 1.09005 * 113.48104 * 106.52667 * 10 9 6 37 37 H 1.08999 * 114.16686 * 272.37584 * 11 10 9 38 38 H 1.08991 * 109.47280 * 211.15917 * 12 11 10 39 39 H 1.08999 * 109.47103 * 331.15985 * 12 11 10 40 40 H 0.97009 * 120.00247 * 0.02562 * 13 12 11 41 41 H 1.08991 * 109.47353 * 299.99717 * 16 14 13 42 42 H 1.09005 * 109.47124 * 60.00443 * 16 14 13 43 43 H 0.97005 * 119.99518 * 179.97438 * 21 20 18 44 44 H 1.08992 * 113.47933 * 253.46644 * 26 9 6 45 45 H 1.09008 * 113.47320 * 23.87595 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6478 0.0052 5 6 3.5765 -0.6548 -0.0007 6 6 4.8004 -1.5340 -0.0012 7 1 4.5163 -2.5521 -0.2673 8 6 5.4329 -1.5286 1.3919 9 7 5.7692 -1.0242 -0.9807 10 6 5.4626 -1.5208 -2.3351 11 6 6.9694 -1.7319 -2.5385 12 6 7.3269 -3.0216 -3.2799 13 7 7.3998 -2.7538 -4.7184 14 6 7.7015 -3.7498 -5.5749 15 8 7.9122 -4.8678 -5.1547 16 6 7.7770 -3.4742 -7.0545 17 16 8.1998 -5.0000 -7.9316 18 6 8.2210 -4.4040 -9.5896 19 1 8.0073 -3.3651 -9.7927 20 6 8.5114 -5.2701 -10.6347 21 7 8.7714 -6.5364 -10.3871 22 14 8.5345 -4.6381 -12.3924 23 1 9.5552 -3.5669 -12.5199 24 1 8.8694 -5.7526 -13.3148 25 1 7.1979 -4.0921 -12.7397 26 6 6.9825 -1.8620 -1.0094 27 8 2.3074 -1.0840 -0.0004 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5141 31 1 1.9821 2.1112 0.0004 32 1 4.7141 -1.9068 2.1188 33 1 6.3178 -2.1648 1.3918 34 1 5.7170 -0.5104 1.6580 35 1 4.8899 -2.4482 -2.3382 36 1 5.0381 -0.7604 -2.9907 37 1 7.4958 -0.8555 -2.9166 38 1 8.2919 -3.3869 -2.9290 39 1 6.5621 -3.7744 -3.0889 40 1 7.2309 -1.8597 -5.0545 41 1 6.8123 -3.1082 -7.4057 42 1 8.5424 -2.7219 -7.2454 43 1 8.9739 -7.1417 -11.1176 44 1 7.8467 -1.3910 -0.5412 45 1 6.8155 -2.8803 -0.6579 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753402433.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:47 Heat of formation + Delta-G solvation = 22.638965 kcal Electronic energy + Delta-G solvation = -25733.459160 eV Core-core repulsion = 21880.283945 eV Total energy + Delta-G solvation = -3853.175215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.67477 -40.90191 -38.98812 -35.42482 -34.87458 -33.79511 -32.42556 -32.21641 -30.11645 -28.21652 -27.46112 -26.09265 -25.51359 -24.82186 -23.44915 -22.01277 -20.75127 -20.66400 -19.86640 -17.92502 -17.50043 -17.13248 -16.54195 -16.40851 -16.04234 -15.62821 -15.31381 -14.86700 -14.79884 -14.70865 -14.29731 -13.91905 -13.79240 -13.60519 -13.29874 -13.13054 -13.10509 -12.81461 -12.76915 -12.58935 -12.37984 -12.15240 -11.82904 -11.64105 -11.53528 -11.25493 -11.04228 -11.03539 -10.83585 -10.75883 -10.73685 -9.82375 -9.47945 -9.33171 -9.06037 -9.01479 -8.88640 -8.23857 -6.49757 -6.21232 -3.91849 1.06257 2.14047 2.38599 3.02130 3.09657 3.23883 3.27700 3.30993 3.48934 3.59756 3.67200 4.06463 4.20983 4.29748 4.36586 4.41241 4.52002 4.64768 4.74704 4.87272 4.90702 4.91275 4.93736 5.06820 5.13818 5.16063 5.20539 5.23513 5.30077 5.36518 5.43962 5.48976 5.58306 5.63166 5.66955 5.72852 5.80202 5.89725 5.93970 5.99947 6.14774 6.48011 6.60987 7.46688 7.59702 7.70197 8.35448 8.60855 9.23969 10.86123 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018426 B = 0.001743 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.235618 B =16064.480707 C =16976.178713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.051 4.051 3 C -0.046 4.046 4 N -0.450 5.450 5 C 0.193 3.807 6 C 0.146 3.854 7 H 0.077 0.923 8 C -0.144 4.144 9 N -0.450 5.450 10 C -0.001 4.001 11 C -0.123 4.123 12 C 0.132 3.868 13 N -0.738 5.738 14 C 0.532 3.468 15 O -0.519 6.519 16 C -0.154 4.154 17 S -0.061 6.061 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.274 1.274 26 C 0.011 3.989 27 O -0.204 6.204 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.182 0.818 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.399 0.601 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.269 0.731 44 H 0.096 0.904 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.975 14.871 24.938 31.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 C -0.185 4.185 4 N -0.178 5.178 5 C -0.014 4.014 6 C 0.036 3.964 7 H 0.095 0.905 8 C -0.202 4.202 9 N -0.174 5.174 10 C -0.130 4.130 11 C -0.143 4.143 12 C 0.008 3.992 13 N -0.392 5.392 14 C 0.318 3.682 15 O -0.393 6.393 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.199 1.199 26 C -0.117 4.117 27 O -0.091 6.091 28 H 0.102 0.898 29 H 0.111 0.889 30 H 0.097 0.903 31 H 0.199 0.801 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.106 0.894 37 H 0.131 0.869 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.233 0.767 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.114 0.886 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.034 13.847 25.765 31.629 hybrid contribution -1.260 1.016 -1.875 2.477 sum -13.294 14.863 23.890 31.118 Atomic orbital electron populations 1.20278 0.83949 1.04497 1.03761 1.23500 0.95035 0.84652 1.07229 1.23183 0.87998 1.00359 1.06976 1.70449 1.22242 1.08961 1.16196 1.25823 0.83565 0.90366 1.01652 1.20475 0.85857 0.93401 0.96620 0.90516 1.21874 1.01056 1.04247 0.93037 1.69046 1.03144 1.43855 1.01345 1.24084 0.96901 1.00167 0.91836 1.22959 0.96582 0.99218 0.95494 1.21225 1.02144 0.95440 0.80417 1.45981 1.74043 1.12863 1.06361 1.20313 0.75467 0.84380 0.88072 1.90701 1.47481 1.22218 1.78916 1.23532 1.05095 1.07770 0.94033 1.85385 1.90993 1.05880 1.01145 1.22830 1.55518 0.98301 0.91784 0.90966 1.24992 0.94546 0.94593 0.99458 1.70010 1.44077 1.03360 1.32850 0.86224 0.78719 0.78398 0.82155 1.19929 1.20815 1.19948 1.23823 0.94933 0.97361 0.95622 1.84373 1.17856 1.36811 1.70090 0.89823 0.88885 0.90303 0.80050 0.91583 0.90604 0.90465 0.90691 0.89361 0.86915 0.90996 0.91555 0.76697 0.89240 0.89178 0.92136 0.88568 0.90368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.29 10.43 36.01 0.38 0.08 16 2 C -0.05 -0.43 7.39 -35.69 -0.26 -0.70 16 3 C -0.05 -0.43 11.80 -17.77 -0.21 -0.64 16 4 N -0.45 -5.25 11.28 -11.10 -0.13 -5.37 16 5 C 0.19 2.04 7.04 -12.94 -0.09 1.95 16 6 C 0.15 1.22 2.27 -68.87 -0.16 1.06 16 7 H 0.08 0.56 7.52 -51.93 -0.39 0.17 16 8 C -0.14 -0.95 9.07 37.16 0.34 -0.61 16 9 N -0.45 -3.89 6.12 -238.18 -1.46 -5.35 16 10 C 0.00 -0.01 7.14 -7.61 -0.05 -0.06 16 11 C -0.12 -0.96 4.09 -90.11 -0.37 -1.33 16 12 C 0.13 1.40 5.58 -4.04 -0.02 1.37 16 13 N -0.74 -9.40 5.56 -60.30 -0.33 -9.73 16 14 C 0.53 9.75 7.85 -10.99 -0.09 9.66 16 15 O -0.52 -11.65 15.86 5.56 0.09 -11.56 16 16 C -0.15 -3.08 6.16 36.01 0.22 -2.85 16 17 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 18 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 19 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 22 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 C 0.01 0.08 6.02 -7.63 -0.05 0.03 16 27 O -0.20 -2.14 10.78 5.38 0.06 -2.08 16 28 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.18 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.38 7.03 -51.93 -0.37 0.02 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.63 7.28 -51.93 -0.38 0.25 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.75 7.81 -51.93 -0.41 0.35 16 40 H 0.40 3.99 8.47 -40.82 -0.35 3.64 16 41 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 42 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 43 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.08 0.45 7.62 -51.92 -0.40 0.06 16 LS Contribution 393.55 15.07 5.93 5.93 Total: -1.00 -36.92 393.55 -9.41 -46.33 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -6.90 Total: -0.23 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -0.17 Total: -5.02 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: -1.18 Total: -45.90 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.15 Total: -13.64 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.92 -9.41 -46.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753402433.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.965 kcal (2) G-P(sol) polarization free energy of solvation -36.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds