Wall clock time and date at job start Tue Mar 31 2020 22:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34326 * 126.44299 * 2 1 4 4 N 1.34476 * 107.66865 * 179.76714 * 3 2 1 5 5 C 1.30258 * 108.69802 * 0.41871 * 4 3 2 6 6 C 1.50701 * 125.61675 * 179.83946 * 5 4 3 7 7 H 1.09002 * 109.47060 * 194.69427 * 6 5 4 8 8 C 1.52997 * 109.47212 * 74.69372 * 6 5 4 9 9 N 1.46896 * 109.47239 * 314.69581 * 6 5 4 10 10 C 1.47481 * 111.00019 * 275.96962 * 9 6 5 11 11 C 1.53509 * 87.93525 * 221.29989 * 10 9 6 12 12 C 1.52998 * 114.17365 * 139.67248 * 11 10 9 13 13 N 1.46497 * 109.47327 * 91.15471 * 12 11 10 14 14 C 1.34775 * 120.00385 * 180.02562 * 13 12 11 15 15 O 1.21281 * 119.99688 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00190 * 180.02562 * 14 13 12 17 17 S 1.81005 * 109.47003 * 179.97438 * 16 14 13 18 18 C 1.76202 * 99.99992 * 180.02562 * 17 16 14 19 19 H 1.07994 * 119.99887 * 359.97438 * 18 17 16 20 20 C 1.38801 * 119.99825 * 180.02562 * 18 17 16 21 21 N 1.31628 * 119.99898 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 119.99807 * 180.02562 * 20 18 17 23 23 H 1.48508 * 109.47284 * 59.99814 * 22 20 18 24 24 H 1.48498 * 109.47253 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47163 * 299.99788 * 22 20 18 26 26 C 1.47480 * 111.00167 * 180.02562 * 9 6 5 27 27 O 1.33964 * 108.76151 * 359.57738 * 5 4 3 28 28 H 1.09000 * 109.47410 * 269.97769 * 1 2 3 29 29 H 1.09005 * 109.46949 * 29.97865 * 1 2 3 30 30 H 1.08997 * 109.47298 * 149.98156 * 1 2 3 31 31 H 1.08002 * 126.16388 * 0.02562 * 3 2 1 32 32 H 1.08998 * 109.47533 * 59.99628 * 8 6 5 33 33 H 1.08996 * 109.47853 * 179.97438 * 8 6 5 34 34 H 1.09002 * 109.47153 * 299.99998 * 8 6 5 35 35 H 1.09006 * 113.47701 * 336.06557 * 10 9 6 36 36 H 1.09005 * 113.48104 * 106.52667 * 10 9 6 37 37 H 1.08999 * 114.16686 * 272.37584 * 11 10 9 38 38 H 1.08991 * 109.47280 * 211.15917 * 12 11 10 39 39 H 1.08999 * 109.47103 * 331.15985 * 12 11 10 40 40 H 0.97009 * 120.00247 * 0.02562 * 13 12 11 41 41 H 1.08991 * 109.47353 * 299.99717 * 16 14 13 42 42 H 1.09005 * 109.47124 * 60.00443 * 16 14 13 43 43 H 0.97005 * 119.99518 * 179.97438 * 21 20 18 44 44 H 1.08992 * 113.47933 * 253.46644 * 26 9 6 45 45 H 1.09008 * 113.47320 * 23.87595 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6478 0.0052 5 6 3.5765 -0.6548 -0.0007 6 6 4.8004 -1.5340 -0.0012 7 1 4.5163 -2.5521 -0.2673 8 6 5.4329 -1.5286 1.3919 9 7 5.7692 -1.0242 -0.9807 10 6 5.4626 -1.5208 -2.3351 11 6 6.9694 -1.7319 -2.5385 12 6 7.3269 -3.0216 -3.2799 13 7 7.3998 -2.7538 -4.7184 14 6 7.7015 -3.7498 -5.5749 15 8 7.9122 -4.8678 -5.1547 16 6 7.7770 -3.4742 -7.0545 17 16 8.1998 -5.0000 -7.9316 18 6 8.2210 -4.4040 -9.5896 19 1 8.0073 -3.3651 -9.7927 20 6 8.5114 -5.2701 -10.6347 21 7 8.7714 -6.5364 -10.3871 22 14 8.5345 -4.6381 -12.3924 23 1 9.5552 -3.5669 -12.5199 24 1 8.8694 -5.7526 -13.3148 25 1 7.1979 -4.0921 -12.7397 26 6 6.9825 -1.8620 -1.0094 27 8 2.3074 -1.0840 -0.0004 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5141 31 1 1.9821 2.1112 0.0004 32 1 4.7141 -1.9068 2.1188 33 1 6.3178 -2.1648 1.3918 34 1 5.7170 -0.5104 1.6580 35 1 4.8899 -2.4482 -2.3382 36 1 5.0381 -0.7604 -2.9907 37 1 7.4958 -0.8555 -2.9166 38 1 8.2919 -3.3869 -2.9290 39 1 6.5621 -3.7744 -3.0889 40 1 7.2309 -1.8597 -5.0545 41 1 6.8123 -3.1082 -7.4057 42 1 8.5424 -2.7219 -7.2454 43 1 8.9739 -7.1417 -11.1176 44 1 7.8467 -1.3910 -0.5412 45 1 6.8155 -2.8803 -0.6579 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753402433.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:46 Heat of formation + Delta-G solvation = -7.626024 kcal Electronic energy + Delta-G solvation = -25734.771548 eV Core-core repulsion = 21880.283945 eV Total energy + Delta-G solvation = -3854.487604 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.36729 -41.59641 -40.36949 -36.31511 -35.69735 -34.67410 -34.57145 -32.78995 -31.42038 -29.21506 -28.06048 -27.64405 -26.68747 -25.63241 -24.18073 -22.66806 -21.87307 -21.45820 -20.72974 -19.78323 -18.29873 -17.85010 -17.73031 -17.45131 -16.93382 -16.87214 -16.67541 -16.24829 -15.91161 -15.63782 -15.38999 -14.98156 -14.62538 -14.42321 -14.29578 -14.28090 -13.89563 -13.72207 -13.42492 -13.30144 -13.26236 -13.16290 -12.95517 -12.85890 -12.73103 -12.63519 -12.39096 -12.23826 -11.93814 -11.72822 -11.52282 -11.46814 -11.12384 -10.93407 -10.27327 -10.12529 -9.96464 -9.65039 -8.65779 -8.33964 -6.11917 0.39456 1.27745 1.44244 1.47253 1.52719 1.57701 1.63290 1.68521 2.26589 2.31228 2.86415 2.99987 3.00321 3.29844 3.38628 3.63946 3.78673 3.82961 3.98054 3.99407 4.08231 4.18443 4.21496 4.31350 4.34750 4.40002 4.51493 4.53038 4.57098 4.64020 4.69094 4.72747 4.75866 4.80253 4.85618 5.01271 5.05771 5.15712 5.17983 5.22827 5.36256 5.42268 5.48029 5.87290 6.20251 6.52106 6.76687 7.07231 7.26157 8.74926 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.018426 B = 0.001743 C = 0.001649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.235618 B =16064.480707 C =16976.178713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.052 4.052 3 C -0.067 4.067 4 N -0.481 5.481 5 C 0.180 3.820 6 C 0.144 3.856 7 H 0.085 0.915 8 C -0.138 4.138 9 N -0.464 5.464 10 C -0.002 4.002 11 C -0.109 4.109 12 C 0.134 3.866 13 N -0.712 5.712 14 C 0.534 3.466 15 O -0.567 6.567 16 C -0.131 4.131 17 S -0.151 6.151 18 C -0.548 4.548 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.262 1.262 24 H -0.279 1.279 25 H -0.262 1.262 26 C 0.017 3.983 27 O -0.219 6.219 28 H 0.099 0.901 29 H 0.113 0.887 30 H 0.081 0.919 31 H 0.203 0.797 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.121 0.879 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.416 0.584 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.271 0.729 44 H 0.108 0.892 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.757 16.905 25.135 33.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.104 4.104 3 C -0.205 4.205 4 N -0.209 5.209 5 C -0.028 4.028 6 C 0.034 3.966 7 H 0.103 0.897 8 C -0.196 4.196 9 N -0.188 5.188 10 C -0.130 4.130 11 C -0.128 4.128 12 C 0.010 3.990 13 N -0.366 5.366 14 C 0.319 3.681 15 O -0.445 6.445 16 C -0.282 4.282 17 S 0.076 5.924 18 C -0.695 4.695 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.547 5.547 22 Si 0.820 3.180 23 H -0.187 1.187 24 H -0.204 1.204 25 H -0.187 1.187 26 C -0.111 4.111 27 O -0.106 6.106 28 H 0.118 0.882 29 H 0.132 0.868 30 H 0.100 0.900 31 H 0.220 0.780 32 H 0.089 0.911 33 H 0.112 0.888 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.139 0.861 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.253 0.747 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.080 0.920 44 H 0.126 0.874 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -12.837 15.944 25.994 33.085 hybrid contribution -1.096 0.479 -1.799 2.160 sum -13.932 16.423 24.195 32.392 Atomic orbital electron populations 1.20494 0.81089 1.05623 1.05102 1.24278 0.96572 0.83967 1.05620 1.23620 0.87526 1.01722 1.07666 1.70410 1.23668 1.09718 1.17136 1.26266 0.84154 0.90517 1.01828 1.20627 0.85294 0.93293 0.97339 0.89718 1.21845 1.01780 1.03773 0.92176 1.69035 1.03847 1.44572 1.01321 1.24065 0.97154 0.99844 0.91979 1.22827 0.96111 0.97867 0.95980 1.21354 1.01973 0.96899 0.78808 1.45750 1.71550 1.12403 1.06863 1.20028 0.75580 0.84602 0.87854 1.90691 1.50143 1.24291 1.79375 1.23383 1.06479 1.03834 0.94508 1.85549 1.91720 1.12165 1.02974 1.23179 1.55465 0.98840 0.92063 0.89933 1.26126 0.93778 0.94684 1.04585 1.70178 1.45199 1.04932 1.34397 0.85012 0.79375 0.77970 0.75689 1.18665 1.20393 1.18696 1.23876 0.94618 0.98014 0.94601 1.84380 1.18193 1.37755 1.70320 0.88236 0.86834 0.90036 0.77971 0.91113 0.88754 0.91873 0.90744 0.90288 0.86051 0.91183 0.92094 0.74698 0.87344 0.87193 0.91999 0.87379 0.89096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.43 71.24 0.74 0.29 16 2 C -0.05 -0.83 7.39 24.79 0.18 -0.65 16 3 C -0.07 -1.21 11.80 83.39 0.98 -0.23 16 4 N -0.48 -11.12 11.28 -303.83 -3.43 -14.55 16 5 C 0.18 3.74 7.04 88.34 0.62 4.37 16 6 C 0.14 2.26 2.27 44.17 0.10 2.36 16 7 H 0.09 1.16 7.52 -2.39 -0.02 1.14 16 8 C -0.14 -1.66 9.07 71.98 0.65 -1.01 16 9 N -0.46 -7.40 6.12 -907.46 -5.56 -12.96 16 10 C 0.00 -0.02 7.14 83.53 0.60 0.57 16 11 C -0.11 -1.46 4.09 -10.47 -0.04 -1.51 16 12 C 0.13 2.60 5.58 86.38 0.48 3.08 16 13 N -0.71 -16.81 5.56 -463.08 -2.57 -19.38 16 14 C 0.53 19.16 7.85 87.66 0.69 19.85 16 15 O -0.57 -25.73 15.86 -3.03 -0.05 -25.78 16 16 C -0.13 -5.12 6.16 71.24 0.44 -4.68 16 17 S -0.15 -8.38 20.57 -56.49 -1.16 -9.54 16 18 C -0.55 -31.27 9.50 67.95 0.65 -30.62 16 19 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 20 C 0.01 0.74 5.49 84.86 0.47 1.21 16 21 N -0.91 -55.96 13.22 21.65 0.29 -55.67 16 22 Si 1.00 43.55 29.55 68.60 2.03 45.58 16 23 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 24 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 25 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 26 C 0.02 0.20 6.02 83.52 0.50 0.70 16 27 O -0.22 -4.51 10.78 -3.66 -0.04 -4.55 16 28 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.11 0.30 8.14 -2.38 -0.02 0.28 16 30 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.20 2.39 8.06 -2.91 -0.02 2.37 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.09 0.75 7.03 -2.39 -0.02 0.74 16 34 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.07 1.17 7.28 -2.38 -0.02 1.15 16 36 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.06 1.31 7.81 -2.39 -0.02 1.29 16 40 H 0.42 7.18 8.47 -92.70 -0.79 6.39 16 41 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 42 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 43 H 0.27 15.49 8.31 -92.70 -0.77 14.71 16 44 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.09 0.83 7.62 -2.38 -0.02 0.81 16 Total: -1.00 -82.62 393.55 -3.21 -85.83 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 0.22 Total: 17.29 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: 7.06 Total: -6.26 kcal Atomic # 7 Polarization: -91.29 SS G_CDS: -11.27 Total: -102.56 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -0.09 Total: -30.33 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.16 Total: -9.54 kcal Total: -82.62 -3.21 -85.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753402433.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.204 kcal (2) G-P(sol) polarization free energy of solvation -82.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds