Wall clock time and date at job start Tue Mar 31 2020 22:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33635 * 122.75222 * 2 1 4 4 S 1.76195 * 107.92383 * 180.02562 * 3 2 1 5 5 C 1.70977 * 90.28561 * 359.97438 * 4 3 2 6 6 C 1.50697 * 124.91972 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47346 * 270.02973 * 6 5 4 8 8 C 1.50703 * 109.46883 * 179.97438 * 7 6 5 9 9 O 1.21284 * 119.99892 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00086 * 179.97438 * 8 7 6 11 11 C 1.46502 * 120.00211 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47008 * 180.02562 * 11 10 8 13 13 H 1.09003 * 109.51827 * 305.10167 * 12 11 10 14 14 C 1.53301 * 109.51282 * 185.00162 * 12 11 10 15 15 N 1.47148 * 108.38622 * 187.77478 * 14 12 11 16 16 C 1.36932 * 120.98428 * 230.51079 * 15 14 12 17 17 H 1.08003 * 120.00196 * 154.04729 * 16 15 14 18 18 C 1.38806 * 120.00082 * 333.77790 * 16 15 14 19 19 N 1.31624 * 119.99582 * 343.08776 * 18 16 15 20 20 Si 1.86798 * 120.00546 * 163.09121 * 18 16 15 21 21 H 1.48495 * 109.47064 * 59.99643 * 20 18 16 22 22 H 1.48505 * 109.47376 * 179.97438 * 20 18 16 23 23 H 1.48508 * 109.46734 * 299.99609 * 20 18 16 24 24 C 1.47158 * 118.03476 * 50.78178 * 15 14 12 25 25 C 1.53710 * 108.16341 * 309.15904 * 24 15 14 26 26 O 1.42958 * 109.14554 * 52.53800 * 25 24 15 27 27 N 1.29035 * 110.16230 * 0.24615 * 5 4 3 28 28 H 1.09000 * 109.47084 * 89.99852 * 1 2 3 29 29 H 1.08999 * 109.47461 * 210.00123 * 1 2 3 30 30 H 1.09000 * 109.46890 * 330.00465 * 1 2 3 31 31 H 1.07998 * 126.03964 * 0.03731 * 3 2 1 32 32 H 1.09004 * 109.46983 * 150.02325 * 6 5 4 33 33 H 1.08998 * 109.46857 * 30.03186 * 6 5 4 34 34 H 1.08999 * 109.47172 * 60.00315 * 7 6 5 35 35 H 1.08998 * 109.47317 * 299.99932 * 7 6 5 36 36 H 0.97011 * 119.99799 * 0.02562 * 10 8 7 37 37 H 1.08999 * 109.46785 * 60.00319 * 11 10 8 38 38 H 1.08998 * 109.47138 * 300.00283 * 11 10 8 39 39 H 1.08999 * 109.67904 * 68.04773 * 14 12 11 40 40 H 1.08998 * 109.67627 * 307.49596 * 14 12 11 41 41 H 0.97006 * 120.00011 * 180.02562 * 19 18 16 42 42 H 1.08996 * 109.67939 * 68.94327 * 24 15 14 43 43 H 1.09003 * 109.67961 * 189.49029 * 24 15 14 44 44 H 1.09002 * 109.65710 * 292.57231 * 25 24 15 45 45 H 1.09004 * 109.43847 * 172.37301 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1239 0.0000 4 16 3.9333 0.6730 -0.0007 5 6 3.5039 -0.9820 -0.0002 6 6 4.4834 -2.1273 -0.0010 7 6 4.8141 -2.5145 -1.4438 8 6 5.7941 -3.6594 -1.4445 9 8 6.1887 -4.1205 -0.3944 10 7 6.2312 -4.1716 -2.6119 11 6 7.1834 -5.2850 -2.6126 12 6 7.5143 -5.6721 -4.0554 13 1 6.5921 -5.8873 -4.5953 14 6 8.4116 -6.9151 -4.0591 15 7 8.8668 -7.1548 -5.4377 16 6 8.7437 -8.3899 -6.0159 17 1 8.6734 -8.4788 -7.0900 18 6 8.7149 -9.5282 -5.2221 19 7 9.1316 -9.4713 -3.9748 20 14 8.0851 -11.1408 -5.9237 21 1 8.9211 -11.5350 -7.0860 22 1 8.1578 -12.1962 -4.8815 23 1 6.6759 -10.9732 -6.3616 24 6 9.4637 -6.0296 -6.1745 25 6 8.5103 -4.8285 -6.0697 26 8 8.2018 -4.5934 -4.6937 27 7 2.2198 -1.1084 -0.0048 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.8393 2.1307 0.0006 32 1 4.0434 -2.9820 0.5129 33 1 5.3961 -1.8251 0.5124 34 1 5.2541 -1.6599 -1.9576 35 1 3.9014 -2.8167 -1.9572 36 1 5.9153 -3.8030 -3.4518 37 1 6.7436 -6.1395 -2.0985 38 1 8.0963 -4.9826 -2.0995 39 1 7.8464 -7.7768 -3.7039 40 1 9.2726 -6.7481 -3.4120 41 1 9.1118 -10.2669 -3.4201 42 1 10.4290 -5.7750 -5.7368 43 1 9.5958 -6.3047 -7.2209 44 1 7.5921 -5.0403 -6.6176 45 1 8.9912 -3.9457 -6.4910 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753651888.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:41 Heat of formation + Delta-G solvation = -23.322934 kcal Electronic energy + Delta-G solvation = -26252.902567 eV Core-core repulsion = 22397.734294 eV Total energy + Delta-G solvation = -3855.168273 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.26422 -39.62570 -38.44107 -34.94745 -34.44178 -34.26140 -31.62828 -31.29772 -30.74844 -28.04444 -27.54646 -26.57513 -24.97337 -23.31525 -22.47819 -21.59026 -20.42040 -20.01650 -19.54930 -17.99587 -17.19121 -16.90892 -16.12043 -15.84014 -15.59667 -15.40256 -15.15044 -15.01539 -14.36126 -14.18395 -14.02543 -13.84121 -13.43602 -13.28389 -13.20430 -13.07002 -12.90813 -12.74147 -12.62327 -12.18635 -12.14330 -11.63373 -11.54107 -11.37623 -11.12171 -10.85176 -10.76119 -10.45000 -10.31267 -10.06241 -9.95640 -9.83783 -9.71318 -9.67232 -9.11184 -8.99850 -8.88563 -8.57149 -6.78626 -5.87058 -3.30964 0.36772 1.04681 1.43434 2.43685 2.71335 3.23765 3.33892 3.40009 3.40630 3.77358 4.23200 4.41770 4.50408 4.69086 4.79260 4.81620 4.89491 5.04678 5.17073 5.22065 5.28001 5.31744 5.33174 5.45736 5.53216 5.61115 5.66064 5.77906 5.82578 5.90349 5.93123 6.00368 6.09598 6.21242 6.34200 6.48076 6.63961 6.75342 7.03861 7.44505 7.44850 7.61616 7.67909 7.81424 8.29863 8.31388 9.08026 9.70965 10.27967 11.20905 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.020148 B = 0.001909 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.390824 B =14660.276972 C =15146.522695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.068 3.932 3 C -0.269 4.269 4 S 0.120 5.880 5 C 0.060 3.940 6 C -0.029 4.029 7 C -0.134 4.134 8 C 0.512 3.488 9 O -0.544 6.544 10 N -0.719 5.719 11 C 0.132 3.868 12 C 0.055 3.945 13 H 0.056 0.944 14 C 0.152 3.848 15 N -0.594 5.594 16 C -0.258 4.258 17 H 0.069 0.931 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.906 3.094 21 H -0.282 1.282 22 H -0.289 1.289 23 H -0.283 1.283 24 C 0.109 3.891 25 C 0.050 3.950 26 O -0.390 6.390 27 N -0.471 5.471 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.175 0.825 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.402 0.598 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.031 0.969 41 H 0.257 0.743 42 H 0.027 0.973 43 H 0.062 0.938 44 H 0.043 0.957 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.507 21.873 5.551 26.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.064 4.064 3 C -0.408 4.408 4 S 0.376 5.624 5 C -0.218 4.218 6 C -0.070 4.070 7 C -0.176 4.176 8 C 0.298 3.702 9 O -0.422 6.422 10 N -0.370 5.370 11 C 0.008 3.992 12 C -0.005 4.005 13 H 0.074 0.926 14 C 0.026 3.974 15 N -0.318 5.318 16 C -0.387 4.387 17 H 0.086 0.914 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.735 3.265 21 H -0.208 1.208 22 H -0.215 1.215 23 H -0.210 1.210 24 C -0.018 4.018 25 C -0.028 4.028 26 O -0.310 6.310 27 N -0.186 5.186 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.193 0.807 32 H 0.123 0.877 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.118 0.882 36 H 0.236 0.764 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.049 0.951 41 H 0.067 0.933 42 H 0.045 0.955 43 H 0.080 0.920 44 H 0.062 0.938 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.400 21.560 6.512 25.710 hybrid contribution -1.343 -0.832 -0.982 1.860 sum -13.743 20.728 5.530 25.478 Atomic orbital electron populations 1.20369 0.87092 1.03379 1.03037 1.20351 0.98341 0.86519 1.01223 1.26813 0.95240 1.03958 1.14805 1.84092 1.07250 1.03140 1.67927 1.27099 0.94020 0.98318 1.02394 1.20013 0.95892 0.94048 0.97070 1.21623 1.00019 0.98063 0.97865 1.20407 0.81881 0.83985 0.83954 1.90722 1.58560 1.61656 1.31229 1.46006 1.46349 1.36248 1.08423 1.21421 0.92579 0.88949 0.96245 1.23147 0.96086 0.90107 0.91117 0.92628 1.21308 0.95672 0.93754 0.86684 1.44055 1.68998 1.06690 1.12043 1.19143 1.45359 0.82449 0.91780 0.91377 1.25069 1.00022 0.97814 0.96706 1.70010 1.47961 1.28901 1.07680 0.86322 0.79065 0.83034 0.78061 1.20817 1.21491 1.20951 1.21691 0.94380 0.88742 0.96964 1.23080 0.98553 0.98767 0.82399 1.87778 1.78021 1.40755 1.24417 1.66158 1.04535 1.31581 1.16303 0.90565 0.90479 0.90764 0.80712 0.87715 0.88573 0.88659 0.88237 0.76404 0.89867 0.90671 0.88580 0.95057 0.93311 0.95514 0.91980 0.93850 0.90064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.31 36.01 0.37 -0.14 16 2 C 0.07 0.62 6.74 -84.23 -0.57 0.06 16 3 C -0.27 -2.08 11.13 29.12 0.32 -1.76 16 4 S 0.12 0.97 23.18 -107.50 -2.49 -1.52 16 5 C 0.06 0.60 6.64 -13.45 -0.09 0.51 16 6 C -0.03 -0.29 5.08 -27.89 -0.14 -0.43 16 7 C -0.13 -1.28 5.68 -27.88 -0.16 -1.44 16 8 C 0.51 6.88 7.83 -10.99 -0.09 6.80 16 9 O -0.54 -9.34 15.98 5.55 0.09 -9.26 16 10 N -0.72 -9.71 5.51 -60.29 -0.33 -10.04 16 11 C 0.13 2.18 5.34 -4.04 -0.02 2.16 16 12 C 0.05 1.01 2.81 -26.58 -0.07 0.94 16 13 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 14 C 0.15 3.55 4.73 -3.53 -0.02 3.53 16 15 N -0.59 -14.63 3.04 -171.57 -0.52 -15.15 16 16 C -0.26 -6.93 9.65 -15.06 -0.15 -7.07 16 17 H 0.07 1.78 7.88 -52.48 -0.41 1.37 16 18 C 0.00 0.08 4.95 -17.43 -0.09 -0.01 16 19 N -0.90 -25.71 11.14 55.49 0.62 -25.09 16 20 Si 0.91 21.28 29.59 -169.99 -5.03 16.25 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.11 2.22 6.76 -3.31 -0.02 2.20 16 25 C 0.05 0.85 7.00 37.53 0.26 1.12 16 26 O -0.39 -7.07 10.33 -35.23 -0.36 -7.43 16 27 N -0.47 -5.27 10.53 -8.06 -0.08 -5.36 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.32 8.12 -51.93 -0.42 -0.10 16 31 H 0.18 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.10 1.17 8.10 -51.93 -0.42 0.75 16 33 H 0.10 0.92 8.10 -51.93 -0.42 0.50 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.40 4.58 8.47 -40.82 -0.35 4.24 16 37 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 39 H 0.10 2.46 6.14 -51.93 -0.32 2.15 16 40 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 1.20 7.96 -51.93 -0.41 0.79 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 385.99 15.07 5.82 5.82 Total: -1.00 -32.55 385.99 -9.72 -42.26 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -6.96 Total: 3.06 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: -0.45 Total: 6.46 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: -0.32 Total: -55.64 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.28 Total: -16.69 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.49 Total: -1.52 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.55 -9.72 -42.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753651888.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.940 kcal (2) G-P(sol) polarization free energy of solvation -32.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds