Wall clock time and date at job start Tue Mar 31 2020 22:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33642 * 122.74923 * 2 1 4 4 S 1.76190 * 107.92558 * 179.97438 * 3 2 1 5 5 C 1.70982 * 90.28470 * 0.02562 * 4 3 2 6 6 C 1.50693 * 124.91638 * 179.97438 * 5 4 3 7 7 C 1.53002 * 109.47113 * 270.02438 * 6 5 4 8 8 C 1.50704 * 109.47220 * 180.02562 * 7 6 5 9 9 O 1.21283 * 119.99908 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00082 * 179.97438 * 8 7 6 11 11 C 1.46494 * 119.99985 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47123 * 180.02562 * 11 10 8 13 13 H 1.08997 * 109.51548 * 60.10241 * 12 11 10 14 14 C 1.53295 * 109.51288 * 180.25716 * 12 11 10 15 15 N 1.47158 * 108.38420 * 172.22779 * 14 12 11 16 16 C 1.36932 * 120.98479 * 129.48393 * 15 14 12 17 17 H 1.07991 * 119.99948 * 206.21102 * 16 15 14 18 18 C 1.38822 * 119.99901 * 26.21297 * 16 15 14 19 19 N 1.31617 * 119.99857 * 16.91844 * 18 16 15 20 20 Si 1.86796 * 119.99724 * 196.91670 * 18 16 15 21 21 H 1.48504 * 109.46779 * 90.00309 * 20 18 16 22 22 H 1.48501 * 109.47049 * 209.99703 * 20 18 16 23 23 H 1.48489 * 109.47458 * 330.00182 * 20 18 16 24 24 C 1.47158 * 118.03121 * 309.46075 * 15 14 12 25 25 C 1.53297 * 108.38411 * 50.54001 * 24 15 14 26 26 O 1.42959 * 109.51154 * 299.99987 * 12 11 10 27 27 N 1.29029 * 110.16317 * 0.24210 * 5 4 3 28 28 H 1.08998 * 109.46903 * 90.00053 * 1 2 3 29 29 H 1.09000 * 109.46998 * 209.99732 * 1 2 3 30 30 H 1.08997 * 109.47504 * 329.99965 * 1 2 3 31 31 H 1.08000 * 126.03771 * 0.04375 * 3 2 1 32 32 H 1.09002 * 109.47212 * 150.02583 * 6 5 4 33 33 H 1.09000 * 109.47304 * 30.02433 * 6 5 4 34 34 H 1.08995 * 109.47208 * 59.99738 * 7 6 5 35 35 H 1.09000 * 109.47031 * 300.00162 * 7 6 5 36 36 H 0.97006 * 119.99747 * 0.02562 * 10 8 7 37 37 H 1.09000 * 109.47275 * 300.00278 * 11 10 8 38 38 H 1.09002 * 109.47230 * 60.00423 * 11 10 8 39 39 H 1.09003 * 109.68057 * 291.94518 * 14 12 11 40 40 H 1.08993 * 109.68230 * 52.50117 * 14 12 11 41 41 H 0.96999 * 119.99863 * 179.97438 * 19 18 16 42 42 H 1.08997 * 109.68039 * 290.81347 * 24 15 14 43 43 H 1.09006 * 109.70608 * 170.28036 * 24 15 14 44 44 H 1.09007 * 109.50652 * 187.77308 * 25 24 15 45 45 H 1.08988 * 109.51328 * 67.61861 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9332 0.6732 0.0007 5 6 3.5040 -0.9818 0.0002 6 6 4.4836 -2.1270 -0.0001 7 6 4.8156 -2.5137 -1.4427 8 6 5.7948 -3.6593 -1.4430 9 8 6.1886 -4.1207 -0.3928 10 7 6.2328 -4.1711 -2.6103 11 6 7.1850 -5.2843 -2.6106 12 6 7.5170 -5.6711 -4.0532 13 1 7.9591 -4.8173 -4.5666 14 6 8.5085 -6.8403 -4.0547 15 7 8.6660 -7.3135 -5.4391 16 6 9.9085 -7.4795 -5.9903 17 1 10.0386 -7.4081 -7.0600 18 6 11.0008 -7.7396 -5.1740 19 7 10.8153 -8.1538 -3.9386 20 14 12.7339 -7.5016 -5.8292 21 1 13.1782 -6.1104 -5.5596 22 1 13.6528 -8.4539 -5.1555 23 1 12.7484 -7.7510 -7.2929 24 6 7.4488 -7.6037 -6.2135 25 6 6.5089 -6.3973 -6.1069 26 8 6.3210 -6.0676 -4.7286 27 7 2.2199 -1.1083 -0.0055 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.8392 2.1308 0.0007 32 1 4.0432 -2.9819 0.5131 33 1 5.3959 -1.8249 0.5143 34 1 5.2559 -1.6588 -1.9559 35 1 3.9033 -2.8158 -1.9570 36 1 5.9181 -3.8018 -3.4503 37 1 8.0975 -4.9821 -2.0967 38 1 6.7449 -6.1391 -2.0970 39 1 9.4716 -6.5053 -3.6694 40 1 8.1244 -7.6481 -3.4320 41 1 11.5786 -8.3359 -3.3684 42 1 6.9580 -8.4884 -5.8081 43 1 7.7097 -7.7747 -7.2580 44 1 5.5472 -6.6443 -6.5567 45 1 6.9478 -5.5467 -6.6282 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753651889.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:44 Heat of formation + Delta-G solvation = -23.418096 kcal Electronic energy + Delta-G solvation = -26261.682239 eV Core-core repulsion = 22406.509839 eV Total energy + Delta-G solvation = -3855.172399 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.26334 -39.62478 -38.45186 -34.94794 -34.44141 -34.25326 -31.63296 -31.30443 -30.75703 -28.04513 -27.56505 -26.58122 -24.97393 -23.31589 -22.47589 -21.58713 -20.39481 -20.01681 -19.56052 -17.99544 -17.19446 -16.90873 -16.13920 -15.80982 -15.61671 -15.36473 -15.15364 -15.06261 -14.37165 -14.13280 -14.04286 -13.83651 -13.48497 -13.31556 -13.16120 -13.04924 -12.90925 -12.75544 -12.62991 -12.18633 -12.13860 -11.63472 -11.54001 -11.37438 -11.12664 -10.87432 -10.76146 -10.44641 -10.27967 -10.07398 -9.95411 -9.83663 -9.71617 -9.66736 -9.11617 -8.99820 -8.87345 -8.58082 -6.79237 -5.87442 -3.31372 0.36788 1.04633 1.43351 2.43815 2.71632 3.24095 3.32894 3.39556 3.41122 3.77357 4.22909 4.41206 4.50861 4.69326 4.79361 4.81776 4.89569 5.05432 5.16755 5.22213 5.27399 5.31857 5.33089 5.46617 5.52699 5.60235 5.66232 5.78119 5.83459 5.90465 5.93238 6.00067 6.09293 6.22175 6.34617 6.47505 6.64114 6.75447 7.03753 7.44640 7.44818 7.62689 7.68073 7.80953 8.29609 8.31892 9.07689 9.70562 10.27583 11.20612 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021816 B = 0.001902 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.173628 B =14721.365289 C =15312.863372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.068 3.932 3 C -0.269 4.269 4 S 0.120 5.880 5 C 0.060 3.940 6 C -0.029 4.029 7 C -0.134 4.134 8 C 0.512 3.488 9 O -0.544 6.544 10 N -0.719 5.719 11 C 0.132 3.868 12 C 0.055 3.945 13 H 0.056 0.944 14 C 0.152 3.848 15 N -0.594 5.594 16 C -0.257 4.257 17 H 0.069 0.931 18 C 0.003 3.997 19 N -0.901 5.901 20 Si 0.906 3.094 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.109 3.891 25 C 0.050 3.950 26 O -0.390 6.390 27 N -0.471 5.471 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.175 0.825 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.403 0.597 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.032 0.968 41 H 0.256 0.744 42 H 0.027 0.973 43 H 0.062 0.938 44 H 0.082 0.918 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.249 18.992 5.428 26.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.064 4.064 3 C -0.408 4.408 4 S 0.375 5.625 5 C -0.218 4.218 6 C -0.070 4.070 7 C -0.176 4.176 8 C 0.297 3.703 9 O -0.422 6.422 10 N -0.369 5.369 11 C 0.008 3.992 12 C -0.005 4.005 13 H 0.074 0.926 14 C 0.026 3.974 15 N -0.318 5.318 16 C -0.386 4.386 17 H 0.087 0.913 18 C -0.196 4.196 19 N -0.545 5.545 20 Si 0.735 3.265 21 H -0.213 1.213 22 H -0.216 1.216 23 H -0.204 1.204 24 C -0.018 4.018 25 C -0.028 4.028 26 O -0.310 6.310 27 N -0.186 5.186 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.193 0.807 32 H 0.123 0.877 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.118 0.882 36 H 0.237 0.763 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.050 0.950 41 H 0.066 0.934 42 H 0.045 0.955 43 H 0.080 0.920 44 H 0.100 0.900 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -16.247 18.597 6.377 25.504 hybrid contribution 0.099 0.303 -0.938 0.991 sum -16.148 18.900 5.439 25.447 Atomic orbital electron populations 1.20368 0.87085 1.03378 1.03043 1.20355 0.98345 0.86512 1.01208 1.26813 0.95224 1.03958 1.14816 1.84088 1.07280 1.03166 1.67964 1.27098 0.94023 0.98297 1.02384 1.20014 0.95882 0.94052 0.97078 1.21622 1.00102 0.97981 0.97854 1.20410 0.81836 0.84046 0.83960 1.90721 1.58474 1.61792 1.31222 1.45973 1.46545 1.35968 1.08444 1.21430 0.92750 0.88809 0.96183 1.23153 0.87459 0.99156 0.90700 0.92643 1.21313 0.97608 0.91852 0.86676 1.44048 1.00963 1.75956 1.10830 1.19198 0.83715 1.43408 0.92323 0.91315 1.25070 0.98656 0.99082 0.96825 1.70017 1.29804 1.46985 1.07719 0.86238 0.84274 0.77645 0.78301 1.21337 1.21631 1.20405 1.21606 0.88809 0.94705 0.96653 1.23004 0.99448 0.97993 0.82328 1.87776 1.31900 1.87879 1.23402 1.66155 1.04534 1.31579 1.16284 0.90558 0.90474 0.90766 0.80713 0.87709 0.88582 0.88733 0.88173 0.76326 0.89966 0.90692 0.88579 0.95037 0.93367 0.95541 0.91976 0.90017 0.93877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.31 36.01 0.37 -0.13 16 2 C 0.07 0.62 6.74 -84.22 -0.57 0.06 16 3 C -0.27 -2.08 11.13 29.12 0.32 -1.76 16 4 S 0.12 0.97 23.18 -107.50 -2.49 -1.53 16 5 C 0.06 0.60 6.64 -13.46 -0.09 0.51 16 6 C -0.03 -0.29 5.09 -27.88 -0.14 -0.43 16 7 C -0.13 -1.29 5.68 -27.88 -0.16 -1.45 16 8 C 0.51 6.89 7.83 -10.98 -0.09 6.81 16 9 O -0.54 -9.36 15.98 5.56 0.09 -9.27 16 10 N -0.72 -9.73 5.45 -60.29 -0.33 -10.05 16 11 C 0.13 2.18 5.37 -4.04 -0.02 2.16 16 12 C 0.05 1.01 2.87 -26.58 -0.08 0.94 16 13 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 14 C 0.15 3.54 4.73 -3.53 -0.02 3.52 16 15 N -0.59 -14.62 3.05 -171.82 -0.52 -15.15 16 16 C -0.26 -6.89 9.65 -15.06 -0.15 -7.04 16 17 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 18 C 0.00 0.07 4.95 -17.43 -0.09 -0.01 16 19 N -0.90 -25.67 11.14 55.49 0.62 -25.05 16 20 Si 0.91 21.24 29.59 -169.99 -5.03 16.21 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 C 0.11 2.23 6.73 -3.53 -0.02 2.20 16 25 C 0.05 0.86 6.99 37.31 0.26 1.12 16 26 O -0.39 -7.07 10.13 -35.23 -0.36 -7.43 16 27 N -0.47 -5.28 10.53 -8.06 -0.08 -5.36 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.32 8.12 -51.93 -0.42 -0.10 16 31 H 0.18 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.10 1.17 8.10 -51.93 -0.42 0.75 16 33 H 0.10 0.92 8.10 -51.93 -0.42 0.50 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.40 4.63 8.35 -40.82 -0.34 4.29 16 37 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.10 2.46 6.14 -51.93 -0.32 2.14 16 40 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 1.20 7.96 -51.93 -0.41 0.79 16 44 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.04 0.71 8.14 -51.94 -0.42 0.29 16 LS Contribution 385.65 15.07 5.81 5.81 Total: -1.00 -32.54 385.65 -9.71 -42.25 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -6.96 Total: 3.08 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -0.46 Total: 6.49 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: -0.32 Total: -55.62 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.27 Total: -16.70 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.49 Total: -1.53 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.54 -9.71 -42.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753651889.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.830 kcal (2) G-P(sol) polarization free energy of solvation -32.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds