Wall clock time and date at job start Tue Mar 31 2020 22:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33815 * 122.44762 * 2 1 4 4 S 1.70614 * 110.95800 * 179.73158 * 3 2 1 5 5 C 1.75835 * 91.56082 * 0.24727 * 4 3 2 6 6 C 1.46580 * 125.45706 * 180.02562 * 5 4 3 7 7 O 1.21701 * 120.00034 * 171.36185 * 6 5 4 8 8 N 1.34779 * 120.00078 * 351.36125 * 6 5 4 9 9 C 1.46494 * 120.00048 * 0.14635 * 8 6 5 10 10 C 1.46498 * 119.99789 * 180.14167 * 8 6 5 11 11 C 1.53001 * 109.47146 * 90.00114 * 10 8 6 12 12 N 1.46906 * 109.47070 * 179.97438 * 11 10 8 13 13 C 1.46896 * 110.99639 * 66.04735 * 12 11 10 14 14 C 1.46900 * 110.99774 * 190.00244 * 12 11 10 15 15 C 1.50702 * 109.46939 * 170.00372 * 14 12 11 16 16 O 1.21292 * 119.99989 * 359.97438 * 15 14 12 17 17 N 1.34772 * 119.99981 * 180.02562 * 15 14 12 18 18 C 1.37098 * 120.00170 * 180.02562 * 17 15 14 19 19 H 1.07999 * 119.99609 * 359.97438 * 18 17 15 20 20 C 1.38943 * 119.99998 * 179.97438 * 18 17 15 21 21 N 1.31416 * 120.00331 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00084 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47046 * 59.99431 * 22 20 18 24 24 H 1.48493 * 109.47454 * 179.97438 * 22 20 18 25 25 H 1.48508 * 109.46714 * 299.99657 * 22 20 18 26 26 C 1.36644 * 109.08263 * 359.97438 * 5 4 3 27 27 H 1.09006 * 109.47002 * 90.02488 * 1 2 3 28 28 H 1.09001 * 109.46991 * 210.01944 * 1 2 3 29 29 H 1.08997 * 109.47521 * 330.02347 * 1 2 3 30 30 H 1.08003 * 124.51974 * 0.02562 * 3 2 1 31 31 H 1.08991 * 109.47803 * 83.45733 * 9 8 6 32 32 H 1.09001 * 109.47119 * 203.46113 * 9 8 6 33 33 H 1.09006 * 109.47219 * 323.45933 * 9 8 6 34 34 H 1.09007 * 109.46845 * 210.00019 * 10 8 6 35 35 H 1.09002 * 109.47530 * 330.00139 * 10 8 6 36 36 H 1.08998 * 109.47299 * 299.99779 * 11 10 8 37 37 H 1.08995 * 109.47086 * 59.99974 * 11 10 8 38 38 H 1.08996 * 109.47200 * 60.00135 * 13 12 11 39 39 H 1.09002 * 109.46719 * 179.97438 * 13 12 11 40 40 H 1.09004 * 109.47367 * 299.99675 * 13 12 11 41 41 H 1.09009 * 109.46978 * 289.99646 * 14 12 11 42 42 H 1.08999 * 109.47404 * 49.99976 * 14 12 11 43 43 H 0.97004 * 120.00202 * 359.97438 * 17 15 14 44 44 H 0.97000 * 119.99845 * 180.02562 * 21 20 18 45 45 H 1.08006 * 123.35216 * 180.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 16 3.8969 0.7894 0.0075 5 6 3.5938 -0.9426 0.0030 6 6 4.6232 -1.9860 0.0067 7 8 4.3080 -3.1513 0.1615 8 7 5.9189 -1.6550 -0.1612 9 6 6.2987 -0.2520 -0.3443 10 6 6.9474 -2.6982 -0.1606 11 6 7.1579 -3.2078 -1.5879 12 7 8.1897 -4.2535 -1.5873 13 6 7.7336 -5.4426 -0.8554 14 6 8.5888 -4.5998 -2.9580 15 6 9.8076 -5.4853 -2.9176 16 8 10.2959 -5.7968 -1.8519 17 7 10.3555 -5.9303 -4.0657 18 6 11.4640 -6.7363 -4.0291 19 1 11.8982 -7.0143 -3.0801 20 6 12.0285 -7.1954 -5.2127 21 7 11.4998 -6.8575 -6.3674 22 14 13.5393 -8.2931 -5.1628 23 1 13.2248 -9.5339 -4.4102 24 1 13.9424 -8.6437 -6.5482 25 1 14.6512 -7.5744 -4.4900 26 6 2.2447 -1.1600 -0.0033 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3633 -0.8898 0.5141 29 1 -0.3634 0.8901 0.5134 30 1 1.8024 2.1232 0.0004 31 1 6.3850 0.2311 0.6289 32 1 7.2563 -0.1995 -0.8622 33 1 5.5372 0.2563 -0.9360 34 1 7.8823 -2.2865 0.2197 35 1 6.6280 -3.5231 0.4762 36 1 6.2230 -3.6195 -1.9682 37 1 7.4773 -2.3829 -2.2247 38 1 6.8352 -5.8383 -1.3290 39 1 8.5162 -6.2011 -0.8709 40 1 7.5108 -5.1709 0.1765 41 1 7.7727 -5.1274 -3.4518 42 1 8.8196 -3.6889 -3.5104 43 1 9.9653 -5.6809 -4.9181 44 1 11.8938 -7.1784 -7.1936 45 1 1.8020 -2.1452 -0.0066 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753852100.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:45 Heat of formation + Delta-G solvation = -19.987752 kcal Electronic energy + Delta-G solvation = -26260.530698 eV Core-core repulsion = 22405.507050 eV Total energy + Delta-G solvation = -3855.023649 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.25922 -38.67296 -38.34015 -36.68853 -35.52912 -33.82368 -31.69121 -31.21474 -29.98446 -28.13944 -27.64416 -27.21848 -25.73244 -24.61730 -23.28499 -21.22525 -20.01273 -19.39878 -19.11346 -18.19817 -17.81217 -16.67514 -16.31678 -16.25979 -15.66318 -15.39806 -15.04699 -14.60085 -14.39031 -14.26162 -13.97348 -13.85471 -13.54966 -13.49073 -13.38596 -13.37801 -12.96019 -12.77220 -12.44281 -12.39301 -12.29751 -12.05488 -11.97299 -11.48969 -11.27624 -11.19292 -10.91337 -10.88447 -10.75100 -10.42121 -10.25762 -10.18870 -9.44143 -9.30555 -8.97981 -8.67541 -8.39612 -7.95153 -7.82943 -6.39028 -3.79803 0.18617 1.13747 1.58585 2.01193 2.59530 2.93055 3.22003 3.27437 3.31938 3.93759 4.06564 4.17684 4.31878 4.59209 4.60304 4.76039 4.88667 4.95605 4.96139 5.14249 5.18517 5.19384 5.22796 5.25179 5.28510 5.47238 5.51004 5.54046 5.71085 5.77243 5.82361 5.89922 5.96251 5.99929 6.05511 6.09530 6.22390 6.32054 6.63299 7.00919 7.29127 7.40623 7.57573 7.84803 8.09060 8.64897 9.20794 9.57441 10.09541 10.78699 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030085 B = 0.001784 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.465337 B =15687.530616 C =15701.056236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.118 4.118 3 C -0.263 4.263 4 S 0.224 5.776 5 C -0.266 4.266 6 C 0.587 3.413 7 O -0.524 6.524 8 N -0.610 5.610 9 C 0.061 3.939 10 C 0.120 3.880 11 C 0.040 3.960 12 N -0.516 5.516 13 C 0.020 3.980 14 C 0.047 3.953 15 C 0.445 3.555 16 O -0.577 6.577 17 N -0.565 5.565 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.903 5.903 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.274 1.274 26 C -0.051 4.051 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.163 0.837 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.035 0.965 37 H 0.073 0.927 38 H 0.016 0.984 39 H 0.096 0.904 40 H 0.061 0.939 41 H 0.047 0.953 42 H 0.087 0.913 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.662 19.840 10.353 29.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.131 4.131 3 C -0.400 4.400 4 S 0.494 5.506 5 C -0.387 4.387 6 C 0.375 3.625 7 O -0.402 6.402 8 N -0.343 5.343 9 C -0.084 4.084 10 C -0.002 4.002 11 C -0.089 4.089 12 N -0.240 5.240 13 C -0.127 4.127 14 C -0.085 4.085 15 C 0.230 3.770 16 O -0.461 6.461 17 N -0.202 5.202 18 C -0.428 4.428 19 H 0.120 0.880 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.084 4.084 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.181 0.819 31 H 0.087 0.913 32 H 0.115 0.885 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.053 0.947 37 H 0.091 0.909 38 H 0.035 0.965 39 H 0.114 0.886 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.105 0.895 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -17.709 20.074 11.216 29.024 hybrid contribution -1.637 -1.270 -1.199 2.394 sum -19.346 18.804 10.017 28.779 Atomic orbital electron populations 1.20531 0.89672 1.02823 1.02420 1.18762 0.97852 0.91552 1.04920 1.25736 1.01941 1.03123 1.09204 1.83524 1.01453 0.98032 1.67588 1.24569 0.97968 0.97137 1.18979 1.17033 0.81415 0.87318 0.76757 1.90854 1.80989 1.18762 1.49576 1.47666 1.06413 1.08082 1.72125 1.22085 1.02438 0.81369 1.02531 1.21553 0.90211 0.90751 0.97682 1.22442 0.93927 0.95600 0.96934 1.61537 1.37665 1.10224 1.14575 1.22586 0.99497 0.93262 0.97403 1.21859 0.97143 0.99869 0.89582 1.19717 0.86906 0.85323 0.85011 1.90481 1.64522 1.61591 1.29504 1.41859 1.27030 1.44446 1.06816 1.19651 1.04210 1.24395 0.94557 0.87952 1.25257 0.99514 0.98543 0.94659 1.69608 1.41479 1.45795 0.97534 0.85916 0.81142 0.80112 0.77029 1.19942 1.21022 1.19904 1.20652 0.91065 0.99989 0.96727 0.91185 0.91302 0.91586 0.81933 0.91278 0.88508 0.90708 0.88975 0.89169 0.94651 0.90894 0.96543 0.88554 0.92003 0.93454 0.89478 0.77507 0.91863 0.83048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.54 10.13 36.01 0.36 -0.17 16 2 C -0.12 -0.94 5.78 -106.45 -0.62 -1.55 16 3 C -0.26 -1.80 10.67 29.18 0.31 -1.49 16 4 S 0.22 1.52 17.90 -107.50 -1.92 -0.41 16 5 C -0.27 -2.75 6.23 -36.80 -0.23 -2.98 16 6 C 0.59 7.50 7.64 -12.90 -0.10 7.40 16 7 O -0.52 -8.60 16.43 5.19 0.09 -8.51 16 8 N -0.61 -6.55 2.87 -183.17 -0.53 -7.08 16 9 C 0.06 0.42 8.92 59.84 0.53 0.95 16 10 C 0.12 1.47 5.30 -4.04 -0.02 1.44 16 11 C 0.04 0.56 5.28 -3.82 -0.02 0.54 16 12 N -0.52 -8.89 4.50 -244.37 -1.10 -9.99 16 13 C 0.02 0.36 8.96 60.06 0.54 0.89 16 14 C 0.05 0.87 5.45 -4.98 -0.03 0.84 16 15 C 0.45 10.64 7.47 -10.99 -0.08 10.55 16 16 O -0.58 -15.61 13.91 5.55 0.08 -15.53 16 17 N -0.56 -14.46 5.29 -10.97 -0.06 -14.52 16 18 C -0.30 -8.37 9.68 -14.94 -0.14 -8.52 16 19 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.73 13.05 55.50 0.72 -24.00 16 22 Si 0.93 21.20 29.55 -169.99 -5.02 16.17 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 26 C -0.05 -0.50 9.81 -40.44 -0.40 -0.89 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.36 8.13 -51.93 -0.42 -0.06 16 29 H 0.07 0.30 8.12 -51.93 -0.42 -0.13 16 30 H 0.16 0.76 8.06 -52.48 -0.42 0.34 16 31 H 0.07 0.38 7.76 -51.93 -0.40 -0.03 16 32 H 0.10 0.55 8.02 -51.93 -0.42 0.13 16 33 H 0.08 0.47 4.61 -23.23 -0.11 0.36 16 34 H 0.09 1.02 8.07 -51.92 -0.42 0.60 16 35 H 0.09 1.25 5.83 -51.93 -0.30 0.95 16 36 H 0.04 0.53 8.12 -51.93 -0.42 0.11 16 37 H 0.07 0.90 7.93 -51.93 -0.41 0.49 16 38 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.10 1.99 5.82 -51.93 -0.30 1.69 16 40 H 0.06 0.97 6.47 -51.93 -0.34 0.63 16 41 H 0.05 0.83 8.12 -51.92 -0.42 0.41 16 42 H 0.09 1.43 7.93 -51.93 -0.41 1.02 16 43 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 44 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 45 H 0.15 1.48 8.06 -52.48 -0.42 1.06 16 LS Contribution 382.36 15.07 5.76 5.76 Total: -1.00 -33.86 382.36 -8.29 -42.15 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -6.32 Total: 8.46 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: 0.02 Total: 7.50 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: -0.96 Total: -55.59 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: 0.16 Total: -24.04 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -1.92 Total: -0.41 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.86 -8.29 -42.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753852100.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.157 kcal (2) G-P(sol) polarization free energy of solvation -33.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds