Wall clock time and date at job start Tue Mar 31 2020 22:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33815 * 122.44762 * 2 1 4 4 S 1.70614 * 110.95800 * 179.73158 * 3 2 1 5 5 C 1.75835 * 91.56082 * 0.24727 * 4 3 2 6 6 C 1.46580 * 125.45706 * 180.02562 * 5 4 3 7 7 O 1.21701 * 120.00034 * 171.36185 * 6 5 4 8 8 N 1.34779 * 120.00078 * 351.36125 * 6 5 4 9 9 C 1.46494 * 120.00048 * 0.14635 * 8 6 5 10 10 C 1.46498 * 119.99789 * 180.14167 * 8 6 5 11 11 C 1.53001 * 109.47146 * 90.00114 * 10 8 6 12 12 N 1.46906 * 109.47070 * 179.97438 * 11 10 8 13 13 C 1.46896 * 110.99639 * 66.04735 * 12 11 10 14 14 C 1.46900 * 110.99774 * 190.00244 * 12 11 10 15 15 C 1.50702 * 109.46939 * 170.00372 * 14 12 11 16 16 O 1.21292 * 119.99989 * 359.97438 * 15 14 12 17 17 N 1.34772 * 119.99981 * 180.02562 * 15 14 12 18 18 C 1.37098 * 120.00170 * 180.02562 * 17 15 14 19 19 H 1.07999 * 119.99609 * 359.97438 * 18 17 15 20 20 C 1.38943 * 119.99998 * 179.97438 * 18 17 15 21 21 N 1.31416 * 120.00331 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00084 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.47046 * 59.99431 * 22 20 18 24 24 H 1.48493 * 109.47454 * 179.97438 * 22 20 18 25 25 H 1.48508 * 109.46714 * 299.99657 * 22 20 18 26 26 C 1.36644 * 109.08263 * 359.97438 * 5 4 3 27 27 H 1.09006 * 109.47002 * 90.02488 * 1 2 3 28 28 H 1.09001 * 109.46991 * 210.01944 * 1 2 3 29 29 H 1.08997 * 109.47521 * 330.02347 * 1 2 3 30 30 H 1.08003 * 124.51974 * 0.02562 * 3 2 1 31 31 H 1.08991 * 109.47803 * 83.45733 * 9 8 6 32 32 H 1.09001 * 109.47119 * 203.46113 * 9 8 6 33 33 H 1.09006 * 109.47219 * 323.45933 * 9 8 6 34 34 H 1.09007 * 109.46845 * 210.00019 * 10 8 6 35 35 H 1.09002 * 109.47530 * 330.00139 * 10 8 6 36 36 H 1.08998 * 109.47299 * 299.99779 * 11 10 8 37 37 H 1.08995 * 109.47086 * 59.99974 * 11 10 8 38 38 H 1.08996 * 109.47200 * 60.00135 * 13 12 11 39 39 H 1.09002 * 109.46719 * 179.97438 * 13 12 11 40 40 H 1.09004 * 109.47367 * 299.99675 * 13 12 11 41 41 H 1.09009 * 109.46978 * 289.99646 * 14 12 11 42 42 H 1.08999 * 109.47404 * 49.99976 * 14 12 11 43 43 H 0.97004 * 120.00202 * 359.97438 * 17 15 14 44 44 H 0.97000 * 119.99845 * 180.02562 * 21 20 18 45 45 H 1.08006 * 123.35216 * 180.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1292 0.0000 4 16 3.8969 0.7894 0.0075 5 6 3.5938 -0.9426 0.0030 6 6 4.6232 -1.9860 0.0067 7 8 4.3080 -3.1513 0.1615 8 7 5.9189 -1.6550 -0.1612 9 6 6.2987 -0.2520 -0.3443 10 6 6.9474 -2.6982 -0.1606 11 6 7.1579 -3.2078 -1.5879 12 7 8.1897 -4.2535 -1.5873 13 6 7.7336 -5.4426 -0.8554 14 6 8.5888 -4.5998 -2.9580 15 6 9.8076 -5.4853 -2.9176 16 8 10.2959 -5.7968 -1.8519 17 7 10.3555 -5.9303 -4.0657 18 6 11.4640 -6.7363 -4.0291 19 1 11.8982 -7.0143 -3.0801 20 6 12.0285 -7.1954 -5.2127 21 7 11.4998 -6.8575 -6.3674 22 14 13.5393 -8.2931 -5.1628 23 1 13.2248 -9.5339 -4.4102 24 1 13.9424 -8.6437 -6.5482 25 1 14.6512 -7.5744 -4.4900 26 6 2.2447 -1.1600 -0.0033 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3633 -0.8898 0.5141 29 1 -0.3634 0.8901 0.5134 30 1 1.8024 2.1232 0.0004 31 1 6.3850 0.2311 0.6289 32 1 7.2563 -0.1995 -0.8622 33 1 5.5372 0.2563 -0.9360 34 1 7.8823 -2.2865 0.2197 35 1 6.6280 -3.5231 0.4762 36 1 6.2230 -3.6195 -1.9682 37 1 7.4773 -2.3829 -2.2247 38 1 6.8352 -5.8383 -1.3290 39 1 8.5162 -6.2011 -0.8709 40 1 7.5108 -5.1709 0.1765 41 1 7.7727 -5.1274 -3.4518 42 1 8.8196 -3.6889 -3.5104 43 1 9.9653 -5.6809 -4.9181 44 1 11.8938 -7.1784 -7.1936 45 1 1.8020 -2.1452 -0.0066 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753852100.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:44 Heat of formation + Delta-G solvation = -44.029997 kcal Electronic energy + Delta-G solvation = -26261.573248 eV Core-core repulsion = 22405.507050 eV Total energy + Delta-G solvation = -3856.066199 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.17673 -40.34652 -39.09419 -38.06412 -36.60930 -35.82789 -33.28037 -32.45671 -30.94197 -29.24934 -28.61357 -27.96996 -27.11593 -26.12924 -24.36910 -22.40708 -21.02727 -20.77354 -20.04670 -19.84735 -18.93044 -17.90339 -17.56198 -17.05979 -16.79777 -16.59094 -16.46527 -16.25865 -15.68073 -15.60482 -15.12545 -14.92606 -14.73630 -14.45639 -14.23848 -14.15448 -14.01957 -13.79360 -13.63193 -13.43834 -13.26502 -13.05894 -12.99860 -12.81574 -12.75543 -12.61180 -12.54421 -12.41239 -12.11940 -11.89691 -11.45110 -11.44311 -11.21981 -10.35615 -10.06537 -9.99245 -9.66199 -9.31389 -9.22355 -8.45261 -5.93977 -0.49384 0.51453 1.01454 1.33237 1.40601 1.42260 1.53213 1.74435 2.05845 2.09065 2.29902 2.81388 3.21192 3.39365 3.46256 3.90130 4.04748 4.05002 4.09666 4.21188 4.23216 4.33770 4.41539 4.44481 4.47729 4.50304 4.56975 4.62313 4.69653 4.74017 4.76493 4.83717 4.86303 4.93003 5.04869 5.15525 5.31519 5.41714 5.42185 5.49265 5.82342 6.01491 6.11528 6.18032 6.61640 6.94516 7.13902 7.57167 8.12976 8.71940 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.030085 B = 0.001784 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.465337 B =15687.530616 C =15701.056236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.135 4.135 3 C -0.259 4.259 4 S 0.289 5.711 5 C -0.305 4.305 6 C 0.580 3.420 7 O -0.577 6.577 8 N -0.606 5.606 9 C 0.052 3.948 10 C 0.126 3.874 11 C 0.049 3.951 12 N -0.526 5.526 13 C 0.028 3.972 14 C 0.058 3.942 15 C 0.443 3.557 16 O -0.612 6.612 17 N -0.574 5.574 18 C -0.333 4.333 19 H 0.080 0.920 20 C -0.014 4.014 21 N -0.921 5.921 22 Si 0.994 3.006 23 H -0.273 1.273 24 H -0.271 1.271 25 H -0.271 1.271 26 C -0.062 4.062 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.191 0.809 31 H 0.088 0.912 32 H 0.115 0.885 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.068 0.932 36 H 0.022 0.978 37 H 0.096 0.904 38 H 0.018 0.982 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.116 0.884 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.878 22.714 10.010 31.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.147 4.147 3 C -0.396 4.396 4 S 0.560 5.440 5 C -0.425 4.425 6 C 0.370 3.630 7 O -0.458 6.458 8 N -0.337 5.337 9 C -0.091 4.091 10 C 0.003 3.997 11 C -0.080 4.080 12 N -0.250 5.250 13 C -0.120 4.120 14 C -0.074 4.074 15 C 0.230 3.770 16 O -0.498 6.498 17 N -0.212 5.212 18 C -0.462 4.462 19 H 0.098 0.902 20 C -0.213 4.213 21 N -0.562 5.562 22 Si 0.817 3.183 23 H -0.199 1.199 24 H -0.195 1.195 25 H -0.196 1.196 26 C -0.096 4.096 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.208 0.792 31 H 0.107 0.893 32 H 0.134 0.866 33 H 0.101 0.899 34 H 0.127 0.873 35 H 0.086 0.914 36 H 0.040 0.960 37 H 0.114 0.886 38 H 0.036 0.964 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.134 0.866 43 H 0.229 0.771 44 H 0.087 0.913 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -17.928 23.006 10.859 31.123 hybrid contribution -1.617 -2.053 -1.055 2.818 sum -19.545 20.953 9.804 30.285 Atomic orbital electron populations 1.20569 0.88322 1.03507 1.02959 1.18909 0.98984 0.91111 1.05662 1.26176 1.02288 1.04024 1.07069 1.83142 1.00914 0.94119 1.65843 1.24511 0.97501 0.99231 1.21248 1.17460 0.82350 0.87243 0.75985 1.90811 1.81910 1.20978 1.52145 1.47716 1.05473 1.09373 1.71164 1.22401 1.03558 0.79078 1.04109 1.21399 0.91151 0.90913 0.96256 1.22457 0.92228 0.94928 0.98411 1.61510 1.39225 1.10544 1.13725 1.22426 0.98102 0.92877 0.98594 1.21757 0.94748 0.99947 0.90910 1.20667 0.87680 0.84754 0.83900 1.90461 1.65914 1.62734 1.30695 1.41922 1.26944 1.44756 1.07532 1.19634 1.05907 1.26435 0.94236 0.90205 1.26043 1.01978 0.99317 0.93997 1.69672 1.42429 1.46157 0.97951 0.84982 0.77584 0.78134 0.77591 1.19853 1.19533 1.19584 1.20759 0.91465 1.00353 0.97063 0.90695 0.91540 0.90032 0.79197 0.89349 0.86643 0.89912 0.87292 0.91380 0.95978 0.88560 0.96385 0.91968 0.90533 0.92193 0.86633 0.77064 0.91334 0.84542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.94 10.13 71.24 0.72 -0.21 16 2 C -0.13 -1.94 5.78 -21.05 -0.12 -2.07 16 3 C -0.26 -2.78 10.67 66.81 0.71 -2.06 16 4 S 0.29 3.10 17.90 -56.49 -1.01 2.09 16 5 C -0.31 -6.15 6.23 24.07 0.15 -6.00 16 6 C 0.58 14.96 7.64 86.42 0.66 15.62 16 7 O -0.58 -19.98 16.43 -4.35 -0.07 -20.05 16 8 N -0.61 -12.28 2.87 -851.63 -2.45 -14.73 16 9 C 0.05 0.56 8.92 127.77 1.14 1.70 16 10 C 0.13 2.95 5.30 86.38 0.46 3.41 16 11 C 0.05 1.27 5.28 86.30 0.46 1.73 16 12 N -0.53 -17.79 4.50 -927.03 -4.17 -21.96 16 13 C 0.03 1.01 8.96 127.69 1.14 2.15 16 14 C 0.06 2.08 5.45 85.56 0.47 2.54 16 15 C 0.44 21.44 7.47 87.66 0.66 22.10 16 16 O -0.61 -34.05 13.91 -3.07 -0.04 -34.09 16 17 N -0.57 -29.87 5.29 -306.99 -1.62 -31.50 16 18 C -0.33 -19.05 9.68 84.04 0.81 -18.24 16 19 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 20 C -0.01 -0.74 5.50 84.92 0.47 -0.27 16 21 N -0.92 -50.12 13.05 21.66 0.28 -49.84 16 22 Si 0.99 43.29 29.55 68.60 2.03 45.32 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 C -0.06 -1.22 9.81 21.72 0.21 -1.01 16 27 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.07 0.67 8.13 -2.39 -0.02 0.65 16 29 H 0.08 0.54 8.12 -2.39 -0.02 0.52 16 30 H 0.19 0.96 8.06 -2.91 -0.02 0.94 16 31 H 0.09 0.65 7.76 -2.39 -0.02 0.64 16 32 H 0.12 0.87 8.02 -2.39 -0.02 0.85 16 33 H 0.08 0.76 4.61 -20.63 -0.10 0.67 16 34 H 0.11 2.19 8.07 -2.38 -0.02 2.17 16 35 H 0.07 1.92 5.83 -2.39 -0.01 1.91 16 36 H 0.02 0.65 8.12 -2.39 -0.02 0.63 16 37 H 0.10 2.09 7.93 -2.39 -0.02 2.07 16 38 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.06 2.67 5.82 -2.39 -0.01 2.66 16 40 H 0.08 2.47 6.47 -2.38 -0.02 2.45 16 41 H 0.06 2.04 8.12 -2.38 -0.02 2.02 16 42 H 0.12 3.53 7.93 -2.39 -0.02 3.51 16 43 H 0.40 19.58 7.90 -92.71 -0.73 18.85 16 44 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 45 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -75.96 382.36 1.08 -74.88 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: 0.20 Total: 30.49 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: 7.94 Total: 19.39 kcal Atomic # 7 Polarization: -110.07 SS G_CDS: -7.96 Total: -118.03 kcal Atomic # 8 Polarization: -54.03 SS G_CDS: -0.11 Total: -54.14 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: 3.10 SS G_CDS: -1.01 Total: 2.09 kcal Total: -75.96 1.08 -74.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753852100.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.854 kcal (2) G-P(sol) polarization free energy of solvation -75.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds