Wall clock time and date at job start Tue Mar 31 2020 22:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29517 * 121.53474 * 2 1 4 4 S 1.69476 * 107.84627 * 180.02562 * 3 2 1 5 5 C 1.72008 * 96.02909 * 0.02562 * 4 3 2 6 6 C 1.50704 * 127.32141 * 180.02562 * 5 4 3 7 7 C 1.37903 * 105.36736 * 359.97438 * 5 4 3 8 8 C 1.47338 * 123.09063 * 180.02562 * 7 5 4 9 9 O 1.21620 * 119.99399 * 269.99963 * 8 7 5 10 10 N 1.34779 * 120.00324 * 89.99653 * 8 7 5 11 11 C 1.46495 * 119.99799 * 174.86558 * 10 8 7 12 12 C 1.52991 * 109.46267 * 301.05718 * 11 10 8 13 13 O 1.42899 * 109.47045 * 305.19917 * 12 11 10 14 14 C 1.53041 * 109.45729 * 181.07807 * 11 10 8 15 15 C 1.53156 * 109.33111 * 301.36339 * 14 11 10 16 16 N 1.46930 * 108.76765 * 305.35016 * 15 14 11 17 17 C 1.36928 * 120.63181 * 233.63150 * 16 15 14 18 18 H 1.08007 * 119.99933 * 151.60819 * 17 16 15 19 19 C 1.38817 * 120.00266 * 331.60913 * 17 16 15 20 20 N 1.31615 * 119.99897 * 344.55905 * 19 17 16 21 21 Si 1.86805 * 120.00015 * 164.55989 * 19 17 16 22 22 H 1.48495 * 109.46950 * 90.00011 * 21 19 17 23 23 H 1.48499 * 109.46758 * 209.99969 * 21 19 17 24 24 H 1.48497 * 109.47076 * 330.00099 * 21 19 17 25 25 C 1.46924 * 118.73341 * 53.61470 * 16 15 14 26 26 C 1.53045 * 109.46009 * 61.02957 * 11 10 8 27 27 H 1.08997 * 109.47104 * 89.97776 * 1 2 3 28 28 H 1.09000 * 109.47125 * 209.97861 * 1 2 3 29 29 H 1.08999 * 109.47065 * 329.98266 * 1 2 3 30 30 H 1.08997 * 109.47147 * 270.00123 * 6 5 4 31 31 H 1.09003 * 109.46771 * 29.99661 * 6 5 4 32 32 H 1.08994 * 109.47449 * 149.99553 * 6 5 4 33 33 H 0.96997 * 119.99866 * 354.86691 * 10 8 7 34 34 H 1.08998 * 109.47355 * 65.20151 * 12 11 10 35 35 H 1.09000 * 109.47036 * 185.20218 * 12 11 10 36 36 H 0.96702 * 113.99939 * 179.97438 * 13 12 11 37 37 H 1.09009 * 109.49281 * 61.30373 * 14 11 10 38 38 H 1.09005 * 109.49358 * 181.39042 * 14 11 10 39 39 H 1.09000 * 109.58768 * 185.56890 * 15 14 11 40 40 H 1.08995 * 109.59203 * 65.14132 * 15 14 11 41 41 H 0.96997 * 120.00399 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.58465 * 186.60263 * 25 16 15 43 43 H 1.08996 * 109.70925 * 66.24909 * 25 16 15 44 44 H 1.08996 * 109.49677 * 178.60375 * 26 11 10 45 45 H 1.08997 * 109.49495 * 298.70417 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1844 1.1039 0.0000 4 16 3.8310 0.7029 -0.0007 5 6 3.6017 -1.0019 -0.0018 6 6 4.6677 -2.0672 -0.0023 7 6 2.2352 -1.1868 -0.0010 8 6 1.6036 -2.5180 -0.0009 9 8 1.3423 -3.0670 -1.0542 10 7 1.3155 -3.1273 1.1663 11 6 0.5868 -4.3981 1.1688 12 6 -0.7676 -4.2105 0.4826 13 8 -1.4767 -3.1416 1.1124 14 6 0.3680 -4.8574 2.6122 15 6 1.7244 -5.0109 3.3066 16 7 2.5651 -5.9129 2.5077 17 6 3.1485 -7.0119 3.0793 18 1 3.3600 -7.8846 2.4792 19 6 3.4679 -7.0045 4.4302 20 7 3.4994 -5.8677 5.0928 21 14 3.8532 -8.6080 5.3077 22 1 5.3098 -8.8831 5.2191 23 1 3.4559 -8.4993 6.7344 24 1 3.1003 -9.7161 4.6671 25 6 2.7676 -5.6134 1.0836 26 6 1.3991 -5.4531 0.4140 27 1 -0.3633 0.0004 -1.0276 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3633 0.8898 0.5141 30 1 4.9249 -2.3233 -1.0300 31 1 5.5537 -1.6947 0.5119 32 1 4.2956 -2.9538 0.5110 33 1 1.5906 -2.7242 2.0046 34 1 -0.6119 -3.9730 -0.5698 35 1 -1.3474 -5.1298 0.5656 36 1 -2.3462 -2.9659 0.7275 37 1 -0.2304 -4.1167 3.1428 38 1 -0.1524 -5.8152 2.6142 39 1 1.5800 -5.4316 4.3017 40 1 2.2066 -4.0366 3.3861 41 1 3.7222 -5.8625 6.0368 42 1 3.3115 -6.4318 0.6118 43 1 3.3359 -4.6892 0.9795 44 1 0.8691 -6.4052 0.4368 45 1 1.5349 -5.1363 -0.6200 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755182044.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:31 Heat of formation + Delta-G solvation = -26.295026 kcal Electronic energy + Delta-G solvation = -29271.112374 eV Core-core repulsion = 25415.815222 eV Total energy + Delta-G solvation = -3855.297152 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.58202 -38.94682 -37.16283 -36.16269 -34.05816 -33.34736 -31.98863 -30.48978 -29.99348 -29.53717 -28.01676 -26.75359 -23.95623 -23.30635 -22.36961 -21.50796 -20.75140 -19.23546 -18.72554 -18.21111 -17.16231 -16.94744 -16.51444 -15.40669 -14.95514 -14.91287 -14.68321 -14.50689 -14.02397 -13.96600 -13.61242 -13.45228 -13.37234 -13.23766 -13.00093 -12.75449 -12.54710 -12.41090 -12.25239 -12.20642 -11.83103 -11.51685 -11.29270 -11.18890 -11.00773 -10.78394 -10.69734 -10.47358 -10.31709 -10.07037 -9.86970 -9.83954 -9.64275 -9.40415 -9.15665 -8.68330 -8.66467 -8.50566 -6.70241 -5.83304 -3.26314 0.52553 1.30727 1.69995 2.13845 2.78577 3.34259 3.41856 3.43803 3.52570 4.31569 4.38354 4.46504 4.86020 4.88600 5.16917 5.23955 5.28758 5.31899 5.38862 5.43566 5.46719 5.50755 5.52289 5.62453 5.70608 5.73087 5.87858 5.93736 6.00407 6.06760 6.24069 6.28956 6.52770 6.53392 6.56530 6.61136 6.74900 6.88924 6.98641 7.25609 7.57388 7.72883 7.74762 7.84787 8.40807 8.44869 9.17151 9.80077 10.36830 11.25014 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013694 B = 0.004035 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.182663 B = 6938.057772 C = 8019.444670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.157 3.843 3 N -0.472 5.472 4 S 0.265 5.735 5 C -0.126 4.126 6 C -0.090 4.090 7 C -0.215 4.215 8 C 0.597 3.403 9 O -0.537 6.537 10 N -0.687 5.687 11 C 0.193 3.807 12 C 0.064 3.936 13 O -0.566 6.566 14 C -0.142 4.142 15 C 0.172 3.828 16 N -0.590 5.590 17 C -0.252 4.252 18 H 0.065 0.935 19 C 0.004 3.996 20 N -0.904 5.904 21 Si 0.901 3.099 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.153 3.847 26 C -0.146 4.146 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.403 0.597 34 H 0.061 0.939 35 H 0.048 0.952 36 H 0.371 0.629 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.016 0.984 41 H 0.254 0.746 42 H 0.053 0.947 43 H 0.015 0.985 44 H 0.066 0.934 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.330 10.084 -9.555 14.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.021 4.021 3 N -0.293 5.293 4 S 0.421 5.579 5 C -0.256 4.256 6 C -0.149 4.149 7 C -0.236 4.236 8 C 0.379 3.621 9 O -0.414 6.414 10 N -0.337 5.337 11 C 0.107 3.893 12 C -0.015 4.015 13 O -0.370 6.370 14 C -0.182 4.182 15 C 0.046 3.954 16 N -0.313 5.313 17 C -0.381 4.381 18 H 0.082 0.918 19 C -0.195 4.195 20 N -0.549 5.549 21 Si 0.731 3.269 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.027 3.973 26 C -0.186 4.186 27 H 0.101 0.899 28 H 0.111 0.889 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.239 0.761 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.216 0.784 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.110 0.890 40 H 0.034 0.966 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.033 0.967 44 H 0.084 0.916 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.056 11.794 -9.730 15.818 hybrid contribution -0.947 -2.223 0.576 2.484 sum -5.003 9.571 -9.154 14.157 Atomic orbital electron populations 1.20690 0.86093 1.04707 1.03805 1.21271 0.98935 0.86893 0.94985 1.76366 1.00152 1.26023 1.26775 1.83911 1.10625 0.95754 1.67591 1.26112 0.97372 1.02353 0.99798 1.20502 0.94844 0.95617 1.03934 1.20294 0.92496 0.96217 1.14563 1.17187 0.77528 0.83145 0.84241 1.90715 1.53893 1.65263 1.31575 1.45963 1.56503 1.23076 1.08158 1.20352 0.88475 0.82954 0.97479 1.22719 0.92560 0.89308 0.96918 1.86478 1.33910 1.54829 1.61778 1.22461 1.01791 1.00708 0.93247 1.20770 0.85728 0.92941 0.96009 1.44041 1.54694 1.28436 1.04126 1.19176 1.34324 0.91658 0.92957 0.91766 1.25032 0.99594 0.96553 0.98301 1.69991 1.52129 1.23723 1.09014 0.86317 0.78129 0.83473 0.78964 1.21434 1.21589 1.20507 1.20809 0.92586 0.97740 0.86193 1.22428 0.98975 0.97233 0.99970 0.89870 0.88852 0.90119 0.89272 0.89875 0.88971 0.76108 0.92075 0.93352 0.78385 0.91814 0.91213 0.89041 0.96638 0.93637 0.92861 0.96689 0.91568 0.90460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.04 9.96 36.00 0.36 -0.69 16 2 C 0.16 2.18 6.75 -83.20 -0.56 1.62 16 3 N -0.47 -6.67 11.97 32.50 0.39 -6.28 16 4 S 0.27 3.25 23.69 -107.50 -2.55 0.70 16 5 C -0.13 -1.68 6.67 -34.43 -0.23 -1.91 16 6 C -0.09 -1.08 10.19 36.01 0.37 -0.72 16 7 C -0.22 -3.15 5.61 -105.94 -0.59 -3.75 16 8 C 0.60 9.43 5.17 -12.56 -0.06 9.36 16 9 O -0.54 -9.60 13.40 5.26 0.07 -9.53 16 10 N -0.69 -10.80 3.87 -48.66 -0.19 -10.98 16 11 C 0.19 3.13 0.44 -131.78 -0.06 3.07 16 12 C 0.06 0.89 5.62 37.15 0.21 1.10 16 13 O -0.57 -7.04 12.36 -35.23 -0.44 -7.48 16 14 C -0.14 -2.54 4.87 -26.63 -0.13 -2.67 16 15 C 0.17 3.78 5.02 -3.73 -0.02 3.76 16 16 N -0.59 -13.87 2.99 -172.34 -0.52 -14.39 16 17 C -0.25 -6.61 9.59 -15.06 -0.14 -6.76 16 18 H 0.06 1.68 7.88 -52.48 -0.41 1.26 16 19 C 0.00 0.10 4.95 -17.43 -0.09 0.01 16 20 N -0.90 -25.10 11.12 55.49 0.62 -24.48 16 21 Si 0.90 21.07 29.58 -169.99 -5.03 16.04 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C 0.15 3.10 6.26 -3.71 -0.02 3.08 16 26 C -0.15 -2.56 4.68 -26.61 -0.12 -2.68 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.09 1.11 6.80 -51.93 -0.35 0.76 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.09 1.30 6.48 -51.93 -0.34 0.97 16 33 H 0.40 6.46 7.22 -40.82 -0.29 6.17 16 34 H 0.06 0.91 6.42 -51.93 -0.33 0.57 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.37 2.96 9.12 45.56 0.42 3.37 16 37 H 0.06 1.08 7.80 -51.92 -0.40 0.68 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.09 2.31 6.02 -51.93 -0.31 2.00 16 40 H 0.02 0.35 6.92 -51.93 -0.36 0.00 16 41 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 42 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 43 H 0.02 0.31 6.38 -51.93 -0.33 -0.02 16 44 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 45 H 0.08 1.36 6.11 -51.93 -0.32 1.05 16 LS Contribution 366.48 15.07 5.52 5.52 Total: -1.00 -30.52 366.48 -8.76 -39.29 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -5.55 Total: 8.75 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -1.10 Total: 2.82 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: 0.30 Total: -56.13 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.36 Total: -17.00 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Atomic # 16 Polarization: 3.25 SS G_CDS: -2.55 Total: 0.70 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.52 -8.76 -39.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755182044.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.993 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds