Wall clock time and date at job start Tue Mar 31 2020 22:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29517 * 121.53474 * 2 1 4 4 S 1.69476 * 107.84627 * 180.02562 * 3 2 1 5 5 C 1.72008 * 96.02909 * 0.02562 * 4 3 2 6 6 C 1.50704 * 127.32141 * 180.02562 * 5 4 3 7 7 C 1.37903 * 105.36736 * 359.97438 * 5 4 3 8 8 C 1.47338 * 123.09063 * 180.02562 * 7 5 4 9 9 O 1.21620 * 119.99399 * 269.99963 * 8 7 5 10 10 N 1.34779 * 120.00324 * 89.99653 * 8 7 5 11 11 C 1.46495 * 119.99799 * 174.86558 * 10 8 7 12 12 C 1.52991 * 109.46267 * 301.05718 * 11 10 8 13 13 O 1.42899 * 109.47045 * 305.19917 * 12 11 10 14 14 C 1.53041 * 109.45729 * 181.07807 * 11 10 8 15 15 C 1.53156 * 109.33111 * 301.36339 * 14 11 10 16 16 N 1.46930 * 108.76765 * 305.35016 * 15 14 11 17 17 C 1.36928 * 120.63181 * 233.63150 * 16 15 14 18 18 H 1.08007 * 119.99933 * 151.60819 * 17 16 15 19 19 C 1.38817 * 120.00266 * 331.60913 * 17 16 15 20 20 N 1.31615 * 119.99897 * 344.55905 * 19 17 16 21 21 Si 1.86805 * 120.00015 * 164.55989 * 19 17 16 22 22 H 1.48495 * 109.46950 * 90.00011 * 21 19 17 23 23 H 1.48499 * 109.46758 * 209.99969 * 21 19 17 24 24 H 1.48497 * 109.47076 * 330.00099 * 21 19 17 25 25 C 1.46924 * 118.73341 * 53.61470 * 16 15 14 26 26 C 1.53045 * 109.46009 * 61.02957 * 11 10 8 27 27 H 1.08997 * 109.47104 * 89.97776 * 1 2 3 28 28 H 1.09000 * 109.47125 * 209.97861 * 1 2 3 29 29 H 1.08999 * 109.47065 * 329.98266 * 1 2 3 30 30 H 1.08997 * 109.47147 * 270.00123 * 6 5 4 31 31 H 1.09003 * 109.46771 * 29.99661 * 6 5 4 32 32 H 1.08994 * 109.47449 * 149.99553 * 6 5 4 33 33 H 0.96997 * 119.99866 * 354.86691 * 10 8 7 34 34 H 1.08998 * 109.47355 * 65.20151 * 12 11 10 35 35 H 1.09000 * 109.47036 * 185.20218 * 12 11 10 36 36 H 0.96702 * 113.99939 * 179.97438 * 13 12 11 37 37 H 1.09009 * 109.49281 * 61.30373 * 14 11 10 38 38 H 1.09005 * 109.49358 * 181.39042 * 14 11 10 39 39 H 1.09000 * 109.58768 * 185.56890 * 15 14 11 40 40 H 1.08995 * 109.59203 * 65.14132 * 15 14 11 41 41 H 0.96997 * 120.00399 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.58465 * 186.60263 * 25 16 15 43 43 H 1.08996 * 109.70925 * 66.24909 * 25 16 15 44 44 H 1.08996 * 109.49677 * 178.60375 * 26 11 10 45 45 H 1.08997 * 109.49495 * 298.70417 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1844 1.1039 0.0000 4 16 3.8310 0.7029 -0.0007 5 6 3.6017 -1.0019 -0.0018 6 6 4.6677 -2.0672 -0.0023 7 6 2.2352 -1.1868 -0.0010 8 6 1.6036 -2.5180 -0.0009 9 8 1.3423 -3.0670 -1.0542 10 7 1.3155 -3.1273 1.1663 11 6 0.5868 -4.3981 1.1688 12 6 -0.7676 -4.2105 0.4826 13 8 -1.4767 -3.1416 1.1124 14 6 0.3680 -4.8574 2.6122 15 6 1.7244 -5.0109 3.3066 16 7 2.5651 -5.9129 2.5077 17 6 3.1485 -7.0119 3.0793 18 1 3.3600 -7.8846 2.4792 19 6 3.4679 -7.0045 4.4302 20 7 3.4994 -5.8677 5.0928 21 14 3.8532 -8.6080 5.3077 22 1 5.3098 -8.8831 5.2191 23 1 3.4559 -8.4993 6.7344 24 1 3.1003 -9.7161 4.6671 25 6 2.7676 -5.6134 1.0836 26 6 1.3991 -5.4531 0.4140 27 1 -0.3633 0.0004 -1.0276 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3633 0.8898 0.5141 30 1 4.9249 -2.3233 -1.0300 31 1 5.5537 -1.6947 0.5119 32 1 4.2956 -2.9538 0.5110 33 1 1.5906 -2.7242 2.0046 34 1 -0.6119 -3.9730 -0.5698 35 1 -1.3474 -5.1298 0.5656 36 1 -2.3462 -2.9659 0.7275 37 1 -0.2304 -4.1167 3.1428 38 1 -0.1524 -5.8152 2.6142 39 1 1.5800 -5.4316 4.3017 40 1 2.2066 -4.0366 3.3861 41 1 3.7222 -5.8625 6.0368 42 1 3.3115 -6.4318 0.6118 43 1 3.3359 -4.6892 0.9795 44 1 0.8691 -6.4052 0.4368 45 1 1.5349 -5.1363 -0.6200 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755182044.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:30 Heat of formation + Delta-G solvation = -47.458499 kcal Electronic energy + Delta-G solvation = -29272.030091 eV Core-core repulsion = 25415.815222 eV Total energy + Delta-G solvation = -3856.214870 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.82736 -40.13087 -38.51154 -37.38681 -35.58474 -34.39852 -33.62755 -32.00923 -31.61021 -30.55677 -29.06488 -28.31895 -25.61355 -24.50492 -23.95457 -22.68683 -22.22675 -20.52265 -20.07362 -19.25553 -18.76241 -18.11409 -17.78652 -16.81271 -16.62272 -16.21998 -15.85863 -15.68034 -15.59335 -15.19182 -15.06920 -14.82202 -14.57426 -14.37213 -14.31422 -14.14528 -13.83375 -13.57229 -13.25468 -13.18591 -13.17174 -13.11796 -12.98364 -12.61882 -12.55068 -12.27311 -12.23436 -11.95374 -11.78889 -11.76128 -11.40537 -11.32005 -10.99686 -10.56181 -10.48226 -10.39022 -9.95555 -9.68045 -8.62921 -7.84849 -5.29941 -0.52224 0.28324 0.68414 1.07537 1.47842 1.50319 1.56525 1.58807 2.28925 2.53136 3.28865 3.32123 3.34366 3.67608 3.72417 3.86493 4.00032 4.03745 4.18574 4.28861 4.33549 4.43784 4.51715 4.53930 4.59228 4.63643 4.65966 4.71306 4.72782 4.79014 4.94288 4.97118 5.06203 5.12478 5.14982 5.22040 5.33468 5.49058 5.54045 5.63122 5.66493 5.76863 6.41872 6.56503 6.96698 7.18174 7.19757 7.88496 8.40322 9.20806 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013694 B = 0.004035 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.182663 B = 6938.057772 C = 8019.444670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.153 3.847 3 N -0.494 5.494 4 S 0.307 5.693 5 C -0.131 4.131 6 C -0.089 4.089 7 C -0.238 4.238 8 C 0.605 3.395 9 O -0.558 6.558 10 N -0.685 5.685 11 C 0.193 3.807 12 C 0.076 3.924 13 O -0.573 6.573 14 C -0.126 4.126 15 C 0.180 3.820 16 N -0.603 5.603 17 C -0.261 4.261 18 H 0.063 0.937 19 C -0.043 4.043 20 N -0.931 5.931 21 Si 0.961 3.039 22 H -0.287 1.287 23 H -0.293 1.293 24 H -0.272 1.272 25 C 0.153 3.847 26 C -0.134 4.134 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.068 0.932 33 H 0.401 0.599 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.393 0.607 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.003 0.997 41 H 0.249 0.751 42 H 0.047 0.953 43 H 0.013 0.987 44 H 0.068 0.932 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.023 10.545 -10.375 15.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.024 4.024 3 N -0.316 5.316 4 S 0.464 5.536 5 C -0.262 4.262 6 C -0.148 4.148 7 C -0.258 4.258 8 C 0.388 3.612 9 O -0.438 6.438 10 N -0.334 5.334 11 C 0.107 3.893 12 C -0.003 4.003 13 O -0.380 6.380 14 C -0.165 4.165 15 C 0.055 3.945 16 N -0.327 5.327 17 C -0.392 4.392 18 H 0.080 0.920 19 C -0.239 4.239 20 N -0.577 5.577 21 Si 0.790 3.210 22 H -0.214 1.214 23 H -0.220 1.220 24 H -0.197 1.197 25 C 0.028 3.972 26 C -0.174 4.174 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.086 0.914 33 H 0.237 0.763 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.242 0.758 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.021 0.979 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.031 0.969 44 H 0.087 0.913 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.779 12.264 -10.576 16.885 hybrid contribution -0.660 -2.304 0.802 2.527 sum -5.439 9.960 -9.774 14.977 Atomic orbital electron populations 1.20728 0.84700 1.05033 1.04481 1.21498 0.99984 0.86430 0.94538 1.76289 1.01314 1.26431 1.27573 1.83733 1.09365 0.94128 1.66423 1.26384 0.97342 1.03609 0.98870 1.20538 0.95120 0.94405 1.04696 1.20312 0.93118 0.95884 1.16510 1.17246 0.76885 0.83357 0.83666 1.90696 1.54882 1.66007 1.32177 1.45930 1.56464 1.22826 1.08183 1.20297 0.89950 0.82796 0.96210 1.22440 0.91398 0.90434 0.96020 1.86424 1.35442 1.54214 1.61944 1.22218 0.99074 1.01116 0.94081 1.20557 0.87632 0.91574 0.94776 1.44227 1.55039 1.28125 1.05305 1.19454 1.33878 0.92502 0.93326 0.91975 1.25681 1.00143 0.99131 0.98956 1.70133 1.53382 1.25349 1.08811 0.85376 0.77719 0.80393 0.77531 1.21413 1.21954 1.19745 1.20863 0.94352 0.97322 0.84691 1.22259 0.97410 0.97959 0.99781 0.88942 0.89322 0.88891 0.87954 0.87903 0.91369 0.76345 0.92615 0.91975 0.75807 0.90622 0.91329 0.92506 0.97889 0.94155 0.93443 0.96881 0.91301 0.90216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.87 9.96 71.23 0.71 -1.16 16 2 C 0.15 4.04 6.75 43.14 0.29 4.34 16 3 N -0.49 -13.24 11.97 -51.09 -0.61 -13.85 16 4 S 0.31 7.02 23.69 -56.49 -1.34 5.69 16 5 C -0.13 -3.37 6.67 25.61 0.17 -3.19 16 6 C -0.09 -2.06 10.19 71.24 0.73 -1.33 16 7 C -0.24 -6.74 5.61 -20.72 -0.12 -6.86 16 8 C 0.60 18.64 5.17 86.64 0.45 19.09 16 9 O -0.56 -19.42 13.40 -4.09 -0.05 -19.48 16 10 N -0.68 -21.08 3.87 -426.11 -1.65 -22.73 16 11 C 0.19 6.04 0.44 3.63 0.00 6.04 16 12 C 0.08 1.95 5.62 71.98 0.40 2.36 16 13 O -0.57 -12.79 12.36 -148.98 -1.84 -14.63 16 14 C -0.13 -4.39 4.87 30.66 0.15 -4.24 16 15 C 0.18 8.07 5.02 86.35 0.43 8.50 16 16 N -0.60 -28.70 2.99 -699.16 -2.09 -30.79 16 17 C -0.26 -13.88 9.59 84.04 0.81 -13.07 16 18 H 0.06 3.26 7.88 -2.91 -0.02 3.24 16 19 C -0.04 -2.34 4.95 84.86 0.42 -1.92 16 20 N -0.93 -52.72 11.12 21.65 0.24 -52.48 16 21 Si 0.96 43.67 29.58 68.60 2.03 45.70 16 22 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 23 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 25 C 0.15 6.23 6.26 86.36 0.54 6.77 16 26 C -0.13 -4.59 4.68 30.68 0.14 -4.45 16 27 H 0.09 1.77 8.14 -2.39 -0.02 1.76 16 28 H 0.09 1.96 6.80 -2.39 -0.02 1.95 16 29 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.07 1.93 6.48 -2.39 -0.02 1.91 16 33 H 0.40 12.78 7.22 -92.71 -0.67 12.12 16 34 H 0.06 1.53 6.42 -2.39 -0.02 1.52 16 35 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.39 5.07 9.12 -74.06 -0.68 4.40 16 37 H 0.08 2.47 7.80 -2.38 -0.02 2.46 16 38 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 39 H 0.06 2.95 6.02 -2.39 -0.01 2.93 16 40 H 0.00 0.15 6.92 -2.39 -0.02 0.13 16 41 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 42 H 0.05 1.94 7.93 -2.39 -0.02 1.92 16 43 H 0.01 0.55 6.38 -2.39 -0.02 0.53 16 44 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.08 2.73 6.11 -2.39 -0.01 2.72 16 Total: -1.00 -64.99 366.48 -0.49 -65.48 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: -0.30 Total: 26.21 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 5.13 Total: 10.88 kcal Atomic # 7 Polarization: -115.74 SS G_CDS: -4.11 Total: -119.85 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -1.90 Total: -34.11 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: 7.02 SS G_CDS: -1.34 Total: 5.69 kcal Total: -64.99 -0.49 -65.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755182044.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.017 kcal (2) G-P(sol) polarization free energy of solvation -64.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds