Wall clock time and date at job start Tue Mar 31 2020 22:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37477 * 123.34822 * 2 1 4 4 C 1.33814 * 115.09811 * 179.97438 * 3 2 1 5 5 S 1.70620 * 110.95828 * 359.97438 * 4 3 2 6 6 C 1.36641 * 123.35229 * 179.97438 * 2 1 3 7 7 C 1.46585 * 125.45971 * 0.05584 * 6 2 1 8 8 O 1.21702 * 119.99829 * 359.97438 * 7 6 2 9 9 N 1.34776 * 119.99848 * 180.02562 * 7 6 2 10 10 C 1.46499 * 119.99807 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47167 * 324.99524 * 10 9 7 12 12 C 1.53005 * 109.47346 * 84.99820 * 10 9 7 13 13 C 1.53001 * 109.47223 * 204.99889 * 10 9 7 14 14 H 1.09002 * 109.46751 * 299.99890 * 13 10 9 15 15 C 1.52994 * 109.47323 * 59.99749 * 13 10 9 16 16 N 1.46899 * 109.47097 * 179.97438 * 13 10 9 17 17 C 1.46904 * 111.00131 * 155.00004 * 16 13 10 18 18 C 1.50690 * 109.47357 * 180.02562 * 17 16 13 19 19 O 1.21294 * 120.00304 * 359.97438 * 18 17 16 20 20 N 1.34776 * 120.00205 * 179.97438 * 18 17 16 21 21 C 1.37098 * 120.00504 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99740 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00417 * 180.02562 * 21 20 18 24 24 N 1.31417 * 119.99708 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00351 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46853 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47322 * 119.99296 * 25 23 21 28 28 H 1.48504 * 109.46962 * 239.99785 * 25 23 21 29 29 H 1.09001 * 109.46746 * 270.03890 * 1 2 3 30 30 H 1.09002 * 109.47508 * 30.03423 * 1 2 3 31 31 H 1.08999 * 109.47162 * 150.03798 * 1 2 3 32 32 H 1.08001 * 122.44912 * 359.96544 * 3 2 1 33 33 H 1.08002 * 124.52110 * 180.02562 * 4 3 2 34 34 H 0.96996 * 120.00545 * 359.97438 * 9 7 6 35 35 H 1.08997 * 109.46807 * 59.99873 * 12 10 9 36 36 H 1.09000 * 109.46956 * 180.02562 * 12 10 9 37 37 H 1.09001 * 109.46687 * 300.00073 * 12 10 9 38 38 H 1.09002 * 109.47237 * 300.00601 * 15 13 10 39 39 H 1.09004 * 109.47176 * 59.99808 * 15 13 10 40 40 H 1.08997 * 109.47708 * 180.02562 * 15 13 10 41 41 H 1.00896 * 111.00522 * 31.04753 * 16 13 10 42 42 H 1.09008 * 109.46724 * 300.00222 * 17 16 13 43 43 H 1.09001 * 109.46930 * 59.99554 * 17 16 13 44 44 H 0.97002 * 120.00115 * 359.97438 * 20 18 17 45 45 H 0.96997 * 119.99815 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2628 1.1484 0.0000 4 6 3.5871 0.9564 0.0005 5 16 3.9624 -0.7080 0.0018 6 6 2.2582 -1.1414 0.0005 7 6 1.7284 -2.5081 0.0000 8 8 0.5258 -2.6945 -0.0006 9 7 2.5732 -3.5583 0.0011 10 6 2.0437 -4.9242 0.0000 11 1 1.1266 -4.9589 0.5880 12 6 1.7443 -5.3541 -1.4376 13 6 3.0774 -5.8724 0.6110 14 1 3.9945 -5.8378 0.0229 15 6 3.3768 -5.4427 2.0485 16 7 2.5462 -7.2420 0.6104 17 6 3.6344 -8.2288 0.6119 18 6 3.0522 -9.6187 0.6106 19 8 1.8491 -9.7723 0.6091 20 7 3.8684 -10.6912 0.6111 21 6 3.3388 -11.9558 0.6094 22 1 2.2675 -12.0925 0.6081 23 6 4.1802 -13.0615 0.6105 24 7 5.4838 -12.8951 0.6126 25 14 3.4586 -14.7845 0.6075 26 1 1.9760 -14.7001 0.6048 27 1 3.9157 -15.5105 -0.6046 28 1 3.9104 -15.5125 1.8205 29 1 -0.3633 0.0007 1.0277 30 1 -0.3634 0.8897 -0.5144 31 1 -0.3633 -0.8903 -0.5132 32 1 1.8200 2.1335 -0.0005 33 1 4.3205 1.7492 0.0010 34 1 3.5317 -3.4098 0.0019 35 1 2.6615 -5.3194 -2.0256 36 1 1.3500 -6.3702 -1.4384 37 1 1.0079 -4.6785 -1.8729 38 1 3.7707 -4.4263 2.0493 39 1 2.4596 -5.4773 2.6366 40 1 4.1135 -6.1179 2.4837 41 1 1.9259 -7.3890 -0.1717 42 1 4.2499 -8.0922 -0.2774 43 1 4.2476 -8.0921 1.5026 44 1 4.8306 -10.5685 0.6119 45 1 6.0713 -13.6670 0.6130 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755224167.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:51 Heat of formation + Delta-G solvation = -43.596694 kcal Electronic energy + Delta-G solvation = -26339.907783 eV Core-core repulsion = 22483.860374 eV Total energy + Delta-G solvation = -3856.047409 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.32305 -38.73679 -38.16613 -37.09257 -34.49725 -33.80456 -31.54765 -31.23356 -30.82172 -29.87340 -28.24287 -26.38194 -24.37117 -24.09790 -23.33776 -21.47614 -20.65708 -19.39052 -19.02679 -18.51302 -17.90863 -16.60739 -16.37810 -15.92937 -15.51726 -15.36684 -15.27108 -14.55408 -14.32723 -14.14445 -13.90757 -13.86235 -13.55761 -13.51763 -13.51390 -12.99679 -12.69517 -12.47730 -12.44485 -12.34497 -12.11123 -11.92026 -11.69021 -11.59843 -11.44996 -11.33577 -11.29655 -11.06136 -10.63630 -10.34052 -10.22481 -10.09466 -9.52102 -9.42926 -9.12847 -8.83896 -8.46165 -8.11060 -7.96213 -6.41969 -3.82620 0.13434 1.08510 1.47193 2.00174 2.81523 2.93780 3.16552 3.27235 3.34777 3.90393 4.10200 4.32937 4.42229 4.47334 4.64070 4.82431 4.83195 4.94065 5.10194 5.14560 5.21136 5.24969 5.35865 5.44495 5.47500 5.55143 5.61900 5.66712 5.67512 5.77748 5.84615 5.94635 5.96120 5.97996 6.12330 6.15444 6.22420 6.28470 6.34998 7.15859 7.21892 7.55597 7.62868 7.93377 8.06502 8.61010 9.17991 9.54079 10.05437 10.75846 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031656 B = 0.001838 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.299240 B =15231.451947 C =15770.648827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.020 4.020 3 C -0.149 4.149 4 C -0.226 4.226 5 S 0.193 5.807 6 C -0.274 4.274 7 C 0.593 3.407 8 O -0.522 6.522 9 N -0.717 5.717 10 C 0.142 3.858 11 H 0.103 0.897 12 C -0.171 4.171 13 C 0.077 3.923 14 H 0.047 0.953 15 C -0.140 4.140 16 N -0.660 5.660 17 C 0.051 3.949 18 C 0.441 3.559 19 O -0.582 6.582 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.104 0.896 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.145 0.855 33 H 0.169 0.831 34 H 0.395 0.605 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.051 0.949 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.352 0.648 42 H 0.044 0.956 43 H 0.087 0.913 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.955 29.121 -2.344 29.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.035 4.035 3 C -0.180 4.180 4 C -0.363 4.363 5 S 0.461 5.539 6 C -0.394 4.394 7 C 0.380 3.620 8 O -0.400 6.400 9 N -0.369 5.369 10 C 0.038 3.962 11 H 0.121 0.879 12 C -0.229 4.229 13 C -0.034 4.034 14 H 0.064 0.936 15 C -0.198 4.198 16 N -0.296 5.296 17 C -0.081 4.081 18 C 0.226 3.774 19 O -0.466 6.466 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.122 0.878 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.113 0.887 32 H 0.163 0.837 33 H 0.187 0.813 34 H 0.230 0.770 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.175 0.825 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.727 27.851 -1.671 27.911 hybrid contribution 0.155 0.354 -0.885 0.965 sum 0.882 28.205 -2.556 28.334 Atomic orbital electron populations 1.20759 0.88567 1.03995 1.03196 1.19564 0.97988 0.90370 0.95568 1.19961 0.92580 0.99766 1.05718 1.25263 1.00705 1.01752 1.08625 1.83016 1.04140 0.98453 1.68294 1.24439 0.97197 0.97421 1.20348 1.16862 0.86191 0.82699 0.76278 1.90800 1.14214 1.85126 1.49865 1.45873 1.09433 1.05949 1.75634 1.21119 0.98383 0.79539 0.97161 0.87919 1.22271 1.02183 1.02541 0.95921 1.21738 0.95499 0.89170 0.96945 0.93556 1.21812 1.02500 0.99773 0.95733 1.60177 1.18210 0.99505 1.51701 1.21728 0.93208 0.91968 1.01234 1.19786 0.87588 0.85497 0.84517 1.90533 1.14671 1.86092 1.55287 1.41865 1.08697 1.05095 1.64406 1.19761 0.94351 0.81274 1.47381 0.87836 1.25267 0.95137 1.00250 0.97362 1.69622 1.02244 1.31726 1.50758 0.85796 0.79327 0.81526 0.77683 1.19197 1.20788 1.20751 0.90548 0.91662 0.88737 0.83724 0.81344 0.77039 0.92464 0.90624 0.91577 0.93023 0.91625 0.92186 0.82547 0.93808 0.89499 0.77480 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 9.55 36.01 0.34 -0.59 16 2 C -0.02 -0.18 5.90 -105.48 -0.62 -0.80 16 3 C -0.15 -1.05 9.97 -41.41 -0.41 -1.46 16 4 C -0.23 -1.38 10.92 29.18 0.32 -1.06 16 5 S 0.19 1.30 22.16 -107.50 -2.38 -1.08 16 6 C -0.27 -2.67 6.45 -36.79 -0.24 -2.90 16 7 C 0.59 6.92 7.74 -12.90 -0.10 6.82 16 8 O -0.52 -7.62 13.90 5.19 0.07 -7.55 16 9 N -0.72 -7.17 4.38 -55.14 -0.24 -7.42 16 10 C 0.14 1.65 2.29 -67.93 -0.16 1.49 16 11 H 0.10 1.42 7.57 -51.93 -0.39 1.02 16 12 C -0.17 -1.93 9.25 37.16 0.34 -1.59 16 13 C 0.08 0.92 2.28 -67.72 -0.15 0.77 16 14 H 0.05 0.50 7.80 -51.93 -0.41 0.10 16 15 C -0.14 -1.60 9.26 37.15 0.34 -1.25 16 16 N -0.66 -10.46 5.93 -107.99 -0.64 -11.10 16 17 C 0.05 0.89 5.96 -4.98 -0.03 0.86 16 18 C 0.44 10.35 7.82 -10.99 -0.09 10.27 16 19 O -0.58 -15.81 15.78 5.55 0.09 -15.72 16 20 N -0.56 -14.23 5.29 -10.97 -0.06 -14.29 16 21 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 22 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 23 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.48 13.05 55.50 0.72 -23.75 16 25 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.09 1.03 6.01 -51.93 -0.31 0.71 16 32 H 0.15 0.72 8.06 -52.49 -0.42 0.29 16 33 H 0.17 0.60 8.06 -52.49 -0.42 0.18 16 34 H 0.40 3.12 7.50 -40.82 -0.31 2.82 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.91 6.21 -51.93 -0.32 0.59 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.05 0.48 7.45 -51.93 -0.39 0.09 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.70 7.45 -51.93 -0.39 0.31 16 41 H 0.35 5.77 5.87 -39.29 -0.23 5.54 16 42 H 0.04 0.68 8.06 -51.92 -0.42 0.26 16 43 H 0.09 1.39 7.44 -51.93 -0.39 1.00 16 44 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 45 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 385.49 15.07 5.81 5.81 Total: -1.00 -32.81 385.49 -8.68 -41.49 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -6.34 Total: 14.99 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -0.69 Total: 2.56 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: -0.22 Total: -56.56 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: 0.16 Total: -23.27 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -2.38 Total: -1.08 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.81 -8.68 -41.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755224167.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.109 kcal (2) G-P(sol) polarization free energy of solvation -32.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds