Wall clock time and date at job start Tue Mar 31 2020 22:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37477 * 123.34822 * 2 1 4 4 C 1.33814 * 115.09811 * 179.97438 * 3 2 1 5 5 S 1.70620 * 110.95828 * 359.97438 * 4 3 2 6 6 C 1.36641 * 123.35229 * 179.97438 * 2 1 3 7 7 C 1.46585 * 125.45971 * 0.05584 * 6 2 1 8 8 O 1.21702 * 119.99829 * 359.97438 * 7 6 2 9 9 N 1.34776 * 119.99848 * 180.02562 * 7 6 2 10 10 C 1.46499 * 119.99807 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47167 * 324.99524 * 10 9 7 12 12 C 1.53005 * 109.47346 * 84.99820 * 10 9 7 13 13 C 1.53001 * 109.47223 * 204.99889 * 10 9 7 14 14 H 1.09002 * 109.46751 * 299.99890 * 13 10 9 15 15 C 1.52994 * 109.47323 * 59.99749 * 13 10 9 16 16 N 1.46899 * 109.47097 * 179.97438 * 13 10 9 17 17 C 1.46904 * 111.00131 * 155.00004 * 16 13 10 18 18 C 1.50690 * 109.47357 * 180.02562 * 17 16 13 19 19 O 1.21294 * 120.00304 * 359.97438 * 18 17 16 20 20 N 1.34776 * 120.00205 * 179.97438 * 18 17 16 21 21 C 1.37098 * 120.00504 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99740 * 359.97438 * 21 20 18 23 23 C 1.38947 * 120.00417 * 180.02562 * 21 20 18 24 24 N 1.31417 * 119.99708 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00351 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46853 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47322 * 119.99296 * 25 23 21 28 28 H 1.48504 * 109.46962 * 239.99785 * 25 23 21 29 29 H 1.09001 * 109.46746 * 270.03890 * 1 2 3 30 30 H 1.09002 * 109.47508 * 30.03423 * 1 2 3 31 31 H 1.08999 * 109.47162 * 150.03798 * 1 2 3 32 32 H 1.08001 * 122.44912 * 359.96544 * 3 2 1 33 33 H 1.08002 * 124.52110 * 180.02562 * 4 3 2 34 34 H 0.96996 * 120.00545 * 359.97438 * 9 7 6 35 35 H 1.08997 * 109.46807 * 59.99873 * 12 10 9 36 36 H 1.09000 * 109.46956 * 180.02562 * 12 10 9 37 37 H 1.09001 * 109.46687 * 300.00073 * 12 10 9 38 38 H 1.09002 * 109.47237 * 300.00601 * 15 13 10 39 39 H 1.09004 * 109.47176 * 59.99808 * 15 13 10 40 40 H 1.08997 * 109.47708 * 180.02562 * 15 13 10 41 41 H 1.00896 * 111.00522 * 31.04753 * 16 13 10 42 42 H 1.09008 * 109.46724 * 300.00222 * 17 16 13 43 43 H 1.09001 * 109.46930 * 59.99554 * 17 16 13 44 44 H 0.97002 * 120.00115 * 359.97438 * 20 18 17 45 45 H 0.96997 * 119.99815 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2628 1.1484 0.0000 4 6 3.5871 0.9564 0.0005 5 16 3.9624 -0.7080 0.0018 6 6 2.2582 -1.1414 0.0005 7 6 1.7284 -2.5081 0.0000 8 8 0.5258 -2.6945 -0.0006 9 7 2.5732 -3.5583 0.0011 10 6 2.0437 -4.9242 0.0000 11 1 1.1266 -4.9589 0.5880 12 6 1.7443 -5.3541 -1.4376 13 6 3.0774 -5.8724 0.6110 14 1 3.9945 -5.8378 0.0229 15 6 3.3768 -5.4427 2.0485 16 7 2.5462 -7.2420 0.6104 17 6 3.6344 -8.2288 0.6119 18 6 3.0522 -9.6187 0.6106 19 8 1.8491 -9.7723 0.6091 20 7 3.8684 -10.6912 0.6111 21 6 3.3388 -11.9558 0.6094 22 1 2.2675 -12.0925 0.6081 23 6 4.1802 -13.0615 0.6105 24 7 5.4838 -12.8951 0.6126 25 14 3.4586 -14.7845 0.6075 26 1 1.9760 -14.7001 0.6048 27 1 3.9157 -15.5105 -0.6046 28 1 3.9104 -15.5125 1.8205 29 1 -0.3633 0.0007 1.0277 30 1 -0.3634 0.8897 -0.5144 31 1 -0.3633 -0.8903 -0.5132 32 1 1.8200 2.1335 -0.0005 33 1 4.3205 1.7492 0.0010 34 1 3.5317 -3.4098 0.0019 35 1 2.6615 -5.3194 -2.0256 36 1 1.3500 -6.3702 -1.4384 37 1 1.0079 -4.6785 -1.8729 38 1 3.7707 -4.4263 2.0493 39 1 2.4596 -5.4773 2.6366 40 1 4.1135 -6.1179 2.4837 41 1 1.9259 -7.3890 -0.1717 42 1 4.2499 -8.0922 -0.2774 43 1 4.2476 -8.0921 1.5026 44 1 4.8306 -10.5685 0.6119 45 1 6.0713 -13.6670 0.6130 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755224167.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:51 Heat of formation + Delta-G solvation = -67.396777 kcal Electronic energy + Delta-G solvation = -26340.939832 eV Core-core repulsion = 22483.860374 eV Total energy + Delta-G solvation = -3857.079458 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.20288 -40.21587 -39.17251 -38.17436 -36.04959 -35.37138 -33.28275 -32.36249 -31.66811 -30.87026 -29.00638 -27.97325 -25.92611 -24.97985 -24.15716 -22.33901 -21.62221 -21.10521 -20.00154 -19.83378 -19.14198 -17.91632 -17.37848 -17.09975 -16.68219 -16.42292 -16.26919 -16.08853 -15.74429 -15.43722 -15.09607 -14.93244 -14.63011 -14.48617 -14.28307 -14.09418 -13.96511 -13.54715 -13.48400 -13.30685 -13.12295 -13.05269 -12.90351 -12.70852 -12.68743 -12.62248 -12.40287 -12.34810 -12.11594 -11.85944 -11.64299 -11.51105 -11.00231 -10.34252 -10.31392 -10.00952 -9.75709 -9.36789 -9.36675 -8.46681 -5.95011 -0.48276 0.52255 0.93729 1.36637 1.40164 1.42172 1.56178 1.94425 2.05638 2.13399 2.30180 2.96326 3.20753 3.49866 3.52626 3.81585 3.92834 3.98859 4.14244 4.25631 4.30744 4.38738 4.42371 4.46057 4.53444 4.59618 4.66826 4.69125 4.78183 4.83012 4.91745 4.97959 5.00853 5.08616 5.17020 5.31853 5.36965 5.39979 5.42018 5.52953 5.89153 6.09862 6.36161 6.40656 6.60607 7.10234 7.13289 7.56738 8.12367 8.70859 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.031656 B = 0.001838 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.299240 B =15231.451947 C =15770.648827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.028 4.028 3 C -0.161 4.161 4 C -0.214 4.214 5 S 0.231 5.769 6 C -0.312 4.312 7 C 0.590 3.410 8 O -0.563 6.563 9 N -0.706 5.706 10 C 0.151 3.849 11 H 0.075 0.925 12 C -0.165 4.165 13 C 0.083 3.917 14 H 0.072 0.928 15 C -0.138 4.138 16 N -0.678 5.678 17 C 0.067 3.933 18 C 0.437 3.563 19 O -0.624 6.624 20 N -0.572 5.572 21 C -0.333 4.333 22 H 0.078 0.922 23 C -0.013 4.013 24 N -0.919 5.919 25 Si 0.992 3.008 26 H -0.275 1.275 27 H -0.270 1.270 28 H -0.271 1.271 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.166 0.834 33 H 0.200 0.800 34 H 0.408 0.592 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.075 0.925 39 H 0.045 0.955 40 H 0.060 0.940 41 H 0.346 0.654 42 H 0.072 0.928 43 H 0.106 0.894 44 H 0.397 0.603 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.374 30.859 -2.556 31.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.044 4.044 3 C -0.192 4.192 4 C -0.352 4.352 5 S 0.500 5.500 6 C -0.432 4.432 7 C 0.378 3.622 8 O -0.444 6.444 9 N -0.358 5.358 10 C 0.046 3.954 11 H 0.093 0.907 12 C -0.224 4.224 13 C -0.027 4.027 14 H 0.090 0.910 15 C -0.196 4.196 16 N -0.314 5.314 17 C -0.066 4.066 18 C 0.225 3.775 19 O -0.511 6.511 20 N -0.210 5.210 21 C -0.462 4.462 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.560 5.560 25 Si 0.816 3.184 26 H -0.200 1.200 27 H -0.195 1.195 28 H -0.196 1.196 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.183 0.817 33 H 0.217 0.783 34 H 0.245 0.755 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.168 0.832 42 H 0.090 0.910 43 H 0.124 0.876 44 H 0.231 0.769 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.211 29.612 -1.880 29.845 hybrid contribution -0.577 -0.076 -0.814 1.001 sum 2.634 29.535 -2.693 29.775 Atomic orbital electron populations 1.20707 0.89090 1.03675 1.02934 1.19814 0.98125 0.91203 0.95287 1.20120 0.92885 0.99909 1.06273 1.25717 1.01023 1.02234 1.06213 1.82818 1.01205 0.98723 1.67296 1.24380 0.99585 0.96379 1.22823 1.17218 0.85800 0.83750 0.75461 1.90780 1.15951 1.85871 1.51754 1.45685 1.09969 1.04960 1.75154 1.20864 0.97360 0.80417 0.96802 0.90725 1.22204 1.02631 1.01597 0.95931 1.21762 0.96147 0.86936 0.97821 0.91025 1.21811 1.01663 1.01268 0.94864 1.60163 1.18214 1.01106 1.51910 1.21589 0.93461 0.88132 1.03385 1.20893 0.87020 0.87447 0.82187 1.90504 1.16751 1.87199 1.56617 1.41919 1.09056 1.04942 1.65047 1.19690 0.93552 0.83196 1.49808 0.90448 1.26020 0.95504 1.03404 0.96333 1.69672 1.02906 1.33037 1.50388 0.84884 0.78098 0.77095 0.78336 1.19953 1.19529 1.19628 0.90806 0.89553 0.91393 0.81666 0.78305 0.75509 0.90762 0.91603 0.92610 0.90594 0.93590 0.92065 0.83163 0.91000 0.87580 0.76882 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.88 9.55 71.24 0.68 -1.20 16 2 C -0.03 -0.49 5.90 -20.42 -0.12 -0.61 16 3 C -0.16 -1.88 9.97 21.08 0.21 -1.67 16 4 C -0.21 -1.89 10.92 66.81 0.73 -1.16 16 5 S 0.23 2.51 22.16 -56.49 -1.25 1.26 16 6 C -0.31 -5.83 6.45 24.08 0.16 -5.68 16 7 C 0.59 13.94 7.74 86.42 0.67 14.61 16 8 O -0.56 -17.44 13.90 -4.36 -0.06 -17.50 16 9 N -0.71 -13.59 4.38 -446.58 -1.96 -15.55 16 10 C 0.15 3.47 2.29 44.99 0.10 3.58 16 11 H 0.07 2.18 7.57 -2.39 -0.02 2.16 16 12 C -0.17 -3.74 9.25 71.98 0.67 -3.08 16 13 C 0.08 1.87 2.28 44.91 0.10 1.97 16 14 H 0.07 1.31 7.80 -2.39 -0.02 1.29 16 15 C -0.14 -2.93 9.26 71.98 0.67 -2.27 16 16 N -0.68 -21.12 5.93 -495.58 -2.94 -24.06 16 17 C 0.07 2.21 5.96 85.55 0.51 2.72 16 18 C 0.44 20.71 7.82 87.65 0.69 21.39 16 19 O -0.62 -34.93 15.78 -3.07 -0.05 -34.97 16 20 N -0.57 -29.20 5.29 -306.99 -1.62 -30.83 16 21 C -0.33 -18.96 9.68 84.04 0.81 -18.15 16 22 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 23 C -0.01 -0.69 5.50 84.92 0.47 -0.22 16 24 N -0.92 -49.28 13.05 21.66 0.28 -49.00 16 25 Si 0.99 43.09 29.55 68.60 2.03 45.12 16 26 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 27 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 28 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.07 1.59 6.01 -2.39 -0.01 1.58 16 32 H 0.17 1.15 8.06 -2.91 -0.02 1.13 16 33 H 0.20 0.49 8.06 -2.91 -0.02 0.47 16 34 H 0.41 5.61 7.50 -92.71 -0.70 4.91 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.07 1.62 6.21 -2.39 -0.01 1.61 16 37 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.08 1.22 7.45 -2.39 -0.02 1.21 16 39 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.06 1.29 7.45 -2.39 -0.02 1.28 16 41 H 0.35 11.47 5.87 -89.70 -0.53 10.95 16 42 H 0.07 2.02 8.06 -2.38 -0.02 2.00 16 43 H 0.11 3.15 7.44 -2.39 -0.02 3.13 16 44 H 0.40 19.07 7.90 -92.71 -0.73 18.33 16 45 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -73.54 385.49 -0.14 -73.67 By element: Atomic # 1 Polarization: 42.52 SS G_CDS: -0.91 Total: 41.62 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 6.34 Total: 10.24 kcal Atomic # 7 Polarization: -113.19 SS G_CDS: -6.24 Total: -119.43 kcal Atomic # 8 Polarization: -52.37 SS G_CDS: -0.11 Total: -52.48 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -1.25 Total: 1.26 kcal Total: -73.54 -0.14 -73.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755224167.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.276 kcal (2) G-P(sol) polarization free energy of solvation -73.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds