Wall clock time and date at job start Tue Mar 31 2020 22:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29521 * 121.52752 * 2 1 4 4 S 1.69484 * 107.83887 * 180.23818 * 3 2 1 5 5 C 1.72012 * 96.02762 * 359.72633 * 4 3 2 6 6 C 1.50703 * 127.31613 * 179.97438 * 5 4 3 7 7 C 1.37893 * 105.36607 * 0.02562 * 5 4 3 8 8 C 1.47342 * 123.08390 * 179.97438 * 7 5 4 9 9 O 1.21622 * 119.99943 * 90.00336 * 8 7 5 10 10 N 1.34778 * 119.99987 * 269.99871 * 8 7 5 11 11 C 1.47148 * 120.98259 * 0.02562 * 10 8 7 12 12 C 1.53300 * 108.41473 * 129.42375 * 11 10 8 13 13 O 1.43041 * 109.17495 * 52.28729 * 12 11 10 14 14 C 1.42961 * 114.18862 * 297.43685 * 13 12 11 15 15 H 1.09003 * 109.51314 * 302.66166 * 14 13 12 16 16 C 1.53000 * 109.55627 * 182.53526 * 14 13 12 17 17 H 1.08993 * 109.47415 * 185.22912 * 16 14 13 18 18 C 1.52997 * 109.47044 * 305.22954 * 16 14 13 19 19 N 1.46500 * 109.47121 * 65.22622 * 16 14 13 20 20 C 1.36934 * 120.00025 * 154.99753 * 19 16 14 21 21 H 1.08001 * 120.00411 * 0.02562 * 20 19 16 22 22 C 1.38814 * 119.99986 * 180.02562 * 20 19 16 23 23 N 1.31615 * 120.00278 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99955 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.46982 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47081 * 119.99742 * 24 22 20 27 27 H 1.48507 * 109.46826 * 239.99822 * 24 22 20 28 28 C 1.47156 * 120.98091 * 179.97438 * 10 8 7 29 29 H 1.08996 * 109.46473 * 270.25971 * 1 2 3 30 30 H 1.08993 * 109.47311 * 30.26387 * 1 2 3 31 31 H 1.08998 * 109.46801 * 150.26589 * 1 2 3 32 32 H 1.09004 * 109.46817 * 270.04787 * 6 5 4 33 33 H 1.09004 * 109.47109 * 30.03974 * 6 5 4 34 34 H 1.08995 * 109.47571 * 150.04597 * 6 5 4 35 35 H 1.09002 * 109.68336 * 249.16720 * 11 10 8 36 36 H 1.08999 * 109.68144 * 9.68390 * 11 10 8 37 37 H 1.08998 * 109.51580 * 172.24632 * 12 11 10 38 38 H 1.08997 * 109.51046 * 292.39879 * 12 11 10 39 39 H 1.09002 * 109.47032 * 179.97438 * 18 16 14 40 40 H 1.09001 * 109.47534 * 299.99626 * 18 16 14 41 41 H 1.09004 * 109.47400 * 59.99977 * 18 16 14 42 42 H 0.97004 * 120.00343 * 335.00496 * 19 16 14 43 43 H 0.96998 * 120.00295 * 179.97438 * 23 22 20 44 44 H 1.08998 * 109.67987 * 350.28907 * 28 10 8 45 45 H 1.09005 * 109.67921 * 110.83228 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1843 1.1040 0.0000 4 16 3.8310 0.7030 -0.0067 5 6 3.6017 -1.0018 -0.0014 6 6 4.6678 -2.0670 -0.0043 7 6 2.2353 -1.1867 0.0048 8 6 1.6038 -2.5179 0.0103 9 8 1.3476 -3.0651 1.0658 10 7 1.3099 -3.1292 -1.1544 11 6 1.6108 -2.4872 -2.4438 12 6 2.3765 -3.4885 -3.3163 13 8 1.6460 -4.7170 -3.3730 14 6 1.4897 -5.3645 -2.1080 15 1 2.4707 -5.5527 -1.6716 16 6 0.7525 -6.6914 -2.2994 17 1 0.5519 -7.1393 -1.3263 18 6 -0.5696 -6.4399 -3.0273 19 7 1.5820 -7.6007 -3.0940 20 6 1.4140 -8.9551 -2.9818 21 1 0.6697 -9.3530 -2.3079 22 6 2.2004 -9.8167 -3.7343 23 7 3.1078 -9.3319 -4.5552 24 14 1.9708 -11.6643 -3.5817 25 1 0.8952 -11.9499 -2.5986 26 1 1.5959 -12.2273 -4.9037 27 1 3.2392 -12.2844 -3.1212 28 6 0.6797 -4.4588 -1.1741 29 1 -0.3632 0.0047 1.0277 30 1 -0.3633 0.8875 -0.5179 31 1 -0.3633 -0.8924 -0.5097 32 1 4.9201 -2.3257 -1.0327 33 1 5.5563 -1.6933 0.5047 34 1 4.2982 -2.9524 0.5128 35 1 0.6817 -2.2043 -2.9387 36 1 2.2233 -1.6009 -2.2785 37 1 2.4885 -3.0838 -4.3222 38 1 3.3606 -3.6698 -2.8843 39 1 -1.0946 -7.3853 -3.1641 40 1 -1.1869 -5.7634 -2.4362 41 1 -0.3691 -5.9920 -4.0006 42 1 2.2503 -7.2434 -3.6995 43 1 3.6575 -9.9340 -5.0807 44 1 0.6761 -4.8783 -0.1681 45 1 -0.3433 -4.3748 -1.5409 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755447309.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:23 Heat of formation + Delta-G solvation = -23.311329 kcal Electronic energy + Delta-G solvation = -28175.839379 eV Core-core repulsion = 24320.671609 eV Total energy + Delta-G solvation = -3855.167770 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.94368 -39.27117 -38.00167 -35.56347 -34.59617 -33.67136 -32.51752 -30.47629 -30.06223 -28.85898 -28.35300 -27.06938 -24.89565 -23.55457 -23.41406 -22.16683 -20.83736 -19.68101 -18.84687 -18.48247 -17.32046 -17.11903 -16.56334 -15.95030 -15.31993 -15.30906 -15.04745 -14.79404 -14.52893 -14.38992 -13.96847 -13.81566 -13.73019 -13.35913 -13.06929 -13.01607 -12.87296 -12.62094 -12.59575 -12.53809 -12.23741 -12.03835 -11.52682 -11.37849 -11.17177 -11.07310 -10.87853 -10.75661 -10.57934 -10.33640 -10.15321 -9.92926 -9.87539 -9.70263 -9.66963 -9.00009 -8.91786 -8.59737 -6.95188 -5.75296 -3.04050 0.17901 0.97150 1.36832 1.77604 2.31064 2.75992 3.43654 3.49599 3.51595 3.91015 3.95575 4.23345 4.51065 4.55719 4.68967 4.81452 4.84686 4.90815 5.00554 5.06752 5.09470 5.13393 5.17585 5.27328 5.35476 5.39153 5.55113 5.57828 5.61194 5.65929 5.67984 5.75132 5.93009 5.95536 6.14985 6.20969 6.28763 6.43180 6.62439 6.79807 7.09198 7.14654 7.41640 7.71009 7.86877 8.42840 9.54988 10.12119 10.48625 11.47161 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021763 B = 0.002707 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.254994 B =10342.011969 C =10727.883971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.154 3.846 3 N -0.466 5.466 4 S 0.280 5.720 5 C -0.133 4.133 6 C -0.089 4.089 7 C -0.212 4.212 8 C 0.592 3.408 9 O -0.525 6.525 10 N -0.602 5.602 11 C 0.074 3.926 12 C 0.048 3.952 13 O -0.356 6.356 14 C 0.076 3.924 15 H 0.064 0.936 16 C 0.185 3.815 17 H 0.060 0.940 18 C -0.163 4.163 19 N -0.719 5.719 20 C -0.238 4.238 21 H 0.071 0.929 22 C -0.013 4.013 23 N -0.930 5.930 24 Si 0.905 3.095 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 C 0.082 3.918 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.035 0.965 41 H 0.057 0.943 42 H 0.389 0.611 43 H 0.254 0.746 44 H 0.102 0.898 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.355 22.260 7.055 23.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.024 4.024 3 N -0.287 5.287 4 S 0.436 5.564 5 C -0.264 4.264 6 C -0.148 4.148 7 C -0.232 4.232 8 C 0.376 3.624 9 O -0.401 6.401 10 N -0.335 5.335 11 C -0.049 4.049 12 C -0.031 4.031 13 O -0.274 6.274 14 C 0.017 3.983 15 H 0.082 0.918 16 C 0.074 3.926 17 H 0.078 0.922 18 C -0.223 4.223 19 N -0.361 5.361 20 C -0.370 4.370 21 H 0.089 0.911 22 C -0.209 4.209 23 N -0.579 5.579 24 Si 0.737 3.263 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.041 4.041 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.122 0.878 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.076 0.924 42 H 0.223 0.777 43 H 0.064 0.936 44 H 0.120 0.880 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.267 23.790 7.496 24.944 hybrid contribution -0.529 -2.307 -0.007 2.367 sum -0.262 21.483 7.489 22.752 Atomic orbital electron populations 1.20650 0.86045 1.04143 1.04271 1.21261 0.98958 0.86824 0.95364 1.76389 1.00285 1.25853 1.26201 1.84037 1.10342 0.95065 1.66908 1.26114 0.97173 1.02773 1.00320 1.20463 0.94835 0.95341 1.04167 1.20129 0.92594 0.95749 1.14760 1.17380 0.77751 0.83640 0.83598 1.90830 1.53185 1.65603 1.30500 1.48145 1.60641 1.19246 1.05481 1.22480 1.01518 0.96690 0.84190 1.22902 0.94337 0.85424 1.00389 1.88129 1.74812 1.34872 1.29605 1.22973 0.98846 0.92824 0.83654 0.91826 1.20194 0.90434 0.86464 0.95479 0.92246 1.22418 0.98250 1.00469 1.01122 1.42360 1.42453 1.02023 1.49238 1.19289 1.15547 0.82451 1.19667 0.91106 1.24735 0.98829 0.97885 0.99460 1.69682 1.24975 1.33490 1.29732 0.86143 0.77211 0.85804 0.77192 1.20541 1.21905 1.21939 1.22573 0.97366 0.81444 1.02672 0.89291 0.89608 0.90124 0.89002 0.89661 0.89531 0.90135 0.89713 0.87772 0.92896 0.92865 0.94652 0.92425 0.77684 0.93620 0.88006 0.89746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.76 9.96 36.01 0.36 -0.40 16 2 C 0.15 1.64 6.75 -83.19 -0.56 1.08 16 3 N -0.47 -5.11 11.97 32.50 0.39 -4.72 16 4 S 0.28 2.49 23.69 -107.50 -2.55 -0.05 16 5 C -0.13 -1.29 6.50 -34.43 -0.22 -1.51 16 6 C -0.09 -0.71 10.19 36.01 0.37 -0.34 16 7 C -0.21 -2.38 3.68 -105.95 -0.39 -2.77 16 8 C 0.59 7.79 5.66 -12.56 -0.07 7.72 16 9 O -0.53 -8.71 16.58 5.26 0.09 -8.63 16 10 N -0.60 -7.31 3.02 -173.60 -0.52 -7.84 16 11 C 0.07 0.74 6.54 -3.53 -0.02 0.72 16 12 C 0.05 0.55 6.99 37.31 0.26 0.81 16 13 O -0.36 -5.69 9.25 -35.23 -0.33 -6.02 16 14 C 0.08 1.24 2.60 -26.61 -0.07 1.17 16 15 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 16 C 0.19 3.57 2.77 -67.93 -0.19 3.38 16 17 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 18 C -0.16 -2.89 9.06 37.16 0.34 -2.55 16 19 N -0.72 -17.82 5.10 -53.43 -0.27 -18.09 16 20 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 21 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 23 N -0.93 -27.95 13.06 55.49 0.72 -27.23 16 24 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 C 0.08 1.11 5.82 -3.56 -0.02 1.09 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.68 7.39 -51.93 -0.38 0.30 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.09 0.83 7.85 -51.93 -0.41 0.42 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.74 6.30 -51.93 -0.33 0.41 16 37 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.03 0.51 6.42 -51.93 -0.33 0.18 16 41 H 0.06 1.08 7.56 -51.93 -0.39 0.69 16 42 H 0.39 10.41 7.59 -40.82 -0.31 10.10 16 43 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.10 1.47 7.08 -51.93 -0.37 1.10 16 45 H 0.08 1.08 6.27 -51.93 -0.33 0.75 16 LS Contribution 379.47 15.07 5.72 5.72 Total: -1.00 -33.10 379.47 -8.86 -41.96 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -6.62 Total: 6.40 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -0.47 Total: 1.24 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: 0.32 Total: -57.87 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.24 Total: -14.64 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -2.55 Total: -0.05 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.10 -8.86 -41.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755447309.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.653 kcal (2) G-P(sol) polarization free energy of solvation -33.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds