Wall clock time and date at job start Tue Mar 31 2020 22:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.29521 * 121.52752 * 2 1 4 4 S 1.69484 * 107.83887 * 180.23818 * 3 2 1 5 5 C 1.72012 * 96.02762 * 359.72633 * 4 3 2 6 6 C 1.50703 * 127.31613 * 179.97438 * 5 4 3 7 7 C 1.37893 * 105.36607 * 0.02562 * 5 4 3 8 8 C 1.47342 * 123.08390 * 179.97438 * 7 5 4 9 9 O 1.21622 * 119.99943 * 90.00336 * 8 7 5 10 10 N 1.34778 * 119.99987 * 269.99871 * 8 7 5 11 11 C 1.47148 * 120.98259 * 0.02562 * 10 8 7 12 12 C 1.53300 * 108.41473 * 129.42375 * 11 10 8 13 13 O 1.43041 * 109.17495 * 52.28729 * 12 11 10 14 14 C 1.42961 * 114.18862 * 297.43685 * 13 12 11 15 15 H 1.09003 * 109.51314 * 302.66166 * 14 13 12 16 16 C 1.53000 * 109.55627 * 182.53526 * 14 13 12 17 17 H 1.08993 * 109.47415 * 185.22912 * 16 14 13 18 18 C 1.52997 * 109.47044 * 305.22954 * 16 14 13 19 19 N 1.46500 * 109.47121 * 65.22622 * 16 14 13 20 20 C 1.36934 * 120.00025 * 154.99753 * 19 16 14 21 21 H 1.08001 * 120.00411 * 0.02562 * 20 19 16 22 22 C 1.38814 * 119.99986 * 180.02562 * 20 19 16 23 23 N 1.31615 * 120.00278 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99955 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.46982 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47081 * 119.99742 * 24 22 20 27 27 H 1.48507 * 109.46826 * 239.99822 * 24 22 20 28 28 C 1.47156 * 120.98091 * 179.97438 * 10 8 7 29 29 H 1.08996 * 109.46473 * 270.25971 * 1 2 3 30 30 H 1.08993 * 109.47311 * 30.26387 * 1 2 3 31 31 H 1.08998 * 109.46801 * 150.26589 * 1 2 3 32 32 H 1.09004 * 109.46817 * 270.04787 * 6 5 4 33 33 H 1.09004 * 109.47109 * 30.03974 * 6 5 4 34 34 H 1.08995 * 109.47571 * 150.04597 * 6 5 4 35 35 H 1.09002 * 109.68336 * 249.16720 * 11 10 8 36 36 H 1.08999 * 109.68144 * 9.68390 * 11 10 8 37 37 H 1.08998 * 109.51580 * 172.24632 * 12 11 10 38 38 H 1.08997 * 109.51046 * 292.39879 * 12 11 10 39 39 H 1.09002 * 109.47032 * 179.97438 * 18 16 14 40 40 H 1.09001 * 109.47534 * 299.99626 * 18 16 14 41 41 H 1.09004 * 109.47400 * 59.99977 * 18 16 14 42 42 H 0.97004 * 120.00343 * 335.00496 * 19 16 14 43 43 H 0.96998 * 120.00295 * 179.97438 * 23 22 20 44 44 H 1.08998 * 109.67987 * 350.28907 * 28 10 8 45 45 H 1.09005 * 109.67921 * 110.83228 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1843 1.1040 0.0000 4 16 3.8310 0.7030 -0.0067 5 6 3.6017 -1.0018 -0.0014 6 6 4.6678 -2.0670 -0.0043 7 6 2.2353 -1.1867 0.0048 8 6 1.6038 -2.5179 0.0103 9 8 1.3476 -3.0651 1.0658 10 7 1.3099 -3.1292 -1.1544 11 6 1.6108 -2.4872 -2.4438 12 6 2.3765 -3.4885 -3.3163 13 8 1.6460 -4.7170 -3.3730 14 6 1.4897 -5.3645 -2.1080 15 1 2.4707 -5.5527 -1.6716 16 6 0.7525 -6.6914 -2.2994 17 1 0.5519 -7.1393 -1.3263 18 6 -0.5696 -6.4399 -3.0273 19 7 1.5820 -7.6007 -3.0940 20 6 1.4140 -8.9551 -2.9818 21 1 0.6697 -9.3530 -2.3079 22 6 2.2004 -9.8167 -3.7343 23 7 3.1078 -9.3319 -4.5552 24 14 1.9708 -11.6643 -3.5817 25 1 0.8952 -11.9499 -2.5986 26 1 1.5959 -12.2273 -4.9037 27 1 3.2392 -12.2844 -3.1212 28 6 0.6797 -4.4588 -1.1741 29 1 -0.3632 0.0047 1.0277 30 1 -0.3633 0.8875 -0.5179 31 1 -0.3633 -0.8924 -0.5097 32 1 4.9201 -2.3257 -1.0327 33 1 5.5563 -1.6933 0.5047 34 1 4.2982 -2.9524 0.5128 35 1 0.6817 -2.2043 -2.9387 36 1 2.2233 -1.6009 -2.2785 37 1 2.4885 -3.0838 -4.3222 38 1 3.3606 -3.6698 -2.8843 39 1 -1.0946 -7.3853 -3.1641 40 1 -1.1869 -5.7634 -2.4362 41 1 -0.3691 -5.9920 -4.0006 42 1 2.2503 -7.2434 -3.6995 43 1 3.6575 -9.9340 -5.0807 44 1 0.6761 -4.8783 -0.1681 45 1 -0.3433 -4.3748 -1.5409 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755447309.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:23 Heat of formation + Delta-G solvation = -45.609044 kcal Electronic energy + Delta-G solvation = -28176.806281 eV Core-core repulsion = 24320.671609 eV Total energy + Delta-G solvation = -3856.134671 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.91701 -40.29373 -39.04588 -37.11865 -35.77469 -34.48856 -34.22514 -31.94677 -30.84820 -29.99011 -29.52551 -28.19519 -26.44735 -25.00649 -24.46338 -23.15147 -21.86034 -21.05485 -19.75637 -19.36283 -19.14507 -18.16129 -17.70044 -17.07001 -16.73161 -16.39517 -16.09233 -15.90586 -15.68636 -15.62058 -15.15290 -15.01400 -14.61253 -14.44435 -14.38496 -14.03274 -13.98999 -13.67927 -13.59901 -13.29298 -13.24552 -13.17204 -12.98446 -12.85376 -12.44470 -12.38648 -12.28718 -12.12288 -11.90326 -11.81831 -11.62850 -11.54655 -11.21453 -11.02195 -10.92376 -10.47512 -9.73047 -9.67997 -8.98508 -7.90697 -5.18833 -0.58484 0.22596 0.61831 0.97566 1.31806 1.49101 1.49245 1.59266 1.78242 2.58053 2.77387 3.24159 3.33626 3.43616 3.58118 3.79447 3.90252 3.93863 4.01687 4.07102 4.12577 4.23858 4.29299 4.38390 4.39810 4.47443 4.49342 4.55411 4.60484 4.64698 4.66119 4.78134 4.80890 4.94068 4.98203 5.04242 5.11798 5.19580 5.28912 5.46664 5.54369 5.65238 6.11924 6.24585 6.31421 6.85842 7.37819 8.13580 8.38009 9.32938 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.021763 B = 0.002707 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.254994 B =10342.011969 C =10727.883971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.152 3.848 3 N -0.491 5.491 4 S 0.323 5.677 5 C -0.131 4.131 6 C -0.091 4.091 7 C -0.233 4.233 8 C 0.598 3.402 9 O -0.566 6.566 10 N -0.598 5.598 11 C 0.080 3.920 12 C 0.042 3.958 13 O -0.379 6.379 14 C 0.091 3.909 15 H 0.043 0.957 16 C 0.176 3.824 17 H 0.059 0.941 18 C -0.149 4.149 19 N -0.732 5.732 20 C -0.236 4.236 21 H 0.077 0.923 22 C -0.076 4.076 23 N -0.968 5.968 24 Si 0.969 3.031 25 H -0.266 1.266 26 H -0.295 1.295 27 H -0.295 1.295 28 C 0.092 3.908 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.066 0.934 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.128 0.872 38 H 0.051 0.949 39 H 0.036 0.964 40 H 0.072 0.928 41 H 0.046 0.954 42 H 0.376 0.624 43 H 0.249 0.751 44 H 0.092 0.908 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.745 23.870 7.280 24.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.025 4.025 3 N -0.313 5.313 4 S 0.480 5.520 5 C -0.262 4.262 6 C -0.150 4.150 7 C -0.254 4.254 8 C 0.384 3.616 9 O -0.445 6.445 10 N -0.330 5.330 11 C -0.042 4.042 12 C -0.036 4.036 13 O -0.298 6.298 14 C 0.032 3.968 15 H 0.061 0.939 16 C 0.067 3.933 17 H 0.077 0.923 18 C -0.209 4.209 19 N -0.373 5.373 20 C -0.368 4.368 21 H 0.095 0.905 22 C -0.268 4.268 23 N -0.619 5.619 24 Si 0.799 3.201 25 H -0.190 1.190 26 H -0.222 1.222 27 H -0.223 1.223 28 C -0.031 4.031 29 H 0.108 0.892 30 H 0.118 0.882 31 H 0.099 0.901 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.085 0.915 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.145 0.855 38 H 0.069 0.931 39 H 0.055 0.945 40 H 0.090 0.910 41 H 0.065 0.935 42 H 0.208 0.792 43 H 0.058 0.942 44 H 0.110 0.890 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.160 25.439 7.734 26.590 hybrid contribution -0.351 -2.684 -0.055 2.707 sum -0.511 22.756 7.680 24.022 Atomic orbital electron populations 1.20710 0.85019 1.04809 1.04559 1.21413 0.99773 0.86401 0.94954 1.76312 1.01582 1.26273 1.27093 1.83891 1.08901 0.93583 1.65672 1.26402 0.97002 1.03934 0.98843 1.20564 0.95139 0.94241 1.05038 1.20033 0.93252 0.94878 1.17191 1.17595 0.76935 0.84059 0.83021 1.90805 1.54911 1.66828 1.31945 1.48161 1.60061 1.18573 1.06252 1.22574 1.02442 0.96433 0.82723 1.23173 0.94016 0.84145 1.02219 1.88084 1.75599 1.36772 1.29331 1.22553 0.97728 0.92131 0.84397 0.93896 1.20430 0.90899 0.87255 0.94705 0.92273 1.22222 0.97391 1.00347 1.00901 1.42534 1.43012 1.02013 1.49704 1.19669 1.14638 0.83877 1.18586 0.90545 1.25515 0.99270 1.02088 0.99973 1.69834 1.26333 1.34611 1.31164 0.85127 0.77164 0.80765 0.77053 1.19015 1.22246 1.22251 1.22339 0.97554 0.81832 1.01355 0.89188 0.88181 0.90144 0.87667 0.87393 0.91492 0.88481 0.87956 0.85454 0.93057 0.94531 0.90976 0.93486 0.79229 0.94185 0.88966 0.88298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.38 9.96 71.24 0.71 -0.67 16 2 C 0.15 2.98 6.75 43.14 0.29 3.27 16 3 N -0.49 -9.80 11.97 -51.09 -0.61 -10.41 16 4 S 0.32 5.00 23.69 -56.49 -1.34 3.67 16 5 C -0.13 -2.29 6.50 25.60 0.17 -2.12 16 6 C -0.09 -1.31 10.19 71.24 0.73 -0.58 16 7 C -0.23 -4.91 3.68 -20.73 -0.08 -4.98 16 8 C 0.60 15.24 5.66 86.64 0.49 15.73 16 9 O -0.57 -18.80 16.58 -4.10 -0.07 -18.86 16 10 N -0.60 -13.73 3.02 -821.40 -2.48 -16.21 16 11 C 0.08 1.42 6.54 86.36 0.56 1.98 16 12 C 0.04 0.89 6.99 72.08 0.50 1.40 16 13 O -0.38 -11.82 9.25 -148.98 -1.38 -13.20 16 14 C 0.09 2.94 2.60 30.68 0.08 3.02 16 15 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 16 C 0.18 6.78 2.77 44.99 0.12 6.90 16 17 H 0.06 2.28 8.08 -2.39 -0.02 2.26 16 18 C -0.15 -5.14 9.06 71.98 0.65 -4.48 16 19 N -0.73 -36.85 5.10 -322.95 -1.65 -38.50 16 20 C -0.24 -13.02 9.93 84.03 0.83 -12.19 16 21 H 0.08 4.05 7.83 -2.91 -0.02 4.02 16 22 C -0.08 -4.38 5.50 84.86 0.47 -3.92 16 23 N -0.97 -59.41 13.06 21.65 0.28 -59.12 16 24 Si 0.97 46.22 29.55 68.60 2.03 48.24 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 26 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 27 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 28 C 0.09 2.41 5.82 86.34 0.50 2.92 16 29 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.22 7.39 -2.39 -0.02 1.21 16 32 H 0.11 1.23 8.14 -2.38 -0.02 1.22 16 33 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.07 1.26 7.85 -2.39 -0.02 1.24 16 35 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.10 1.50 6.30 -2.39 -0.02 1.48 16 37 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.07 1.93 6.42 -2.39 -0.02 1.92 16 41 H 0.05 1.71 7.56 -2.38 -0.02 1.70 16 42 H 0.38 20.64 7.59 -92.71 -0.70 19.94 16 43 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 44 H 0.09 2.64 7.08 -2.39 -0.02 2.62 16 45 H 0.10 2.31 6.27 -2.38 -0.01 2.30 16 Total: -1.00 -72.20 379.47 1.13 -71.06 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: 0.31 Total: 27.06 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 6.04 Total: 6.27 kcal Atomic # 7 Polarization: -119.78 SS G_CDS: -4.46 Total: -124.24 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -1.45 Total: -32.06 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.24 kcal Atomic # 16 Polarization: 5.00 SS G_CDS: -1.34 Total: 3.67 kcal Total: -72.20 1.13 -71.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755447309.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.455 kcal (2) G-P(sol) polarization free energy of solvation -72.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds