Wall clock time and date at job start Tue Mar 31 2020 22:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34332 * 126.44519 * 2 1 4 4 N 1.34480 * 107.66905 * 179.72605 * 3 2 1 5 5 C 1.30257 * 108.70070 * 0.41642 * 4 3 2 6 6 C 1.50697 * 125.61909 * 179.84063 * 5 4 3 7 7 N 1.46900 * 109.47090 * 89.69551 * 6 5 4 8 8 C 1.46901 * 111.00039 * 180.02562 * 7 6 5 9 9 H 1.08996 * 110.88685 * 328.87640 * 8 7 6 10 10 C 1.55156 * 111.00026 * 204.99946 * 8 7 6 11 11 C 1.54329 * 102.94072 * 206.42044 * 10 8 7 12 12 H 1.09000 * 109.88522 * 262.77914 * 11 10 8 13 13 C 1.53007 * 110.01206 * 141.68304 * 11 10 8 14 14 N 1.47025 * 107.26778 * 22.19637 * 11 10 8 15 15 C 1.34774 * 125.64574 * 181.02230 * 14 11 10 16 16 O 1.21279 * 120.00472 * 359.97438 * 15 14 11 17 17 C 1.50706 * 120.00020 * 180.02562 * 15 14 11 18 18 S 1.81002 * 109.47200 * 179.97438 * 17 15 14 19 19 C 1.76198 * 99.99878 * 179.97438 * 18 17 15 20 20 H 1.08006 * 120.00031 * 359.97438 * 19 18 17 21 21 C 1.38801 * 120.00096 * 180.02562 * 19 18 17 22 22 N 1.31631 * 119.99737 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99933 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47767 * 59.99657 * 23 21 19 25 25 H 1.48505 * 109.46944 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46958 * 299.99344 * 23 21 19 27 27 C 1.47419 * 108.70349 * 1.28347 * 14 11 10 28 28 O 1.33967 * 108.75885 * 359.58126 * 5 4 3 29 29 H 1.08996 * 109.47559 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46807 * 300.00883 * 1 2 3 31 31 H 1.09002 * 109.47248 * 60.00550 * 1 2 3 32 32 H 1.07998 * 126.16604 * 359.97280 * 3 2 1 33 33 H 1.09001 * 109.47025 * 329.69669 * 6 5 4 34 34 H 1.08997 * 109.47053 * 209.69349 * 6 5 4 35 35 H 1.00902 * 110.99953 * 303.95265 * 7 6 5 36 36 H 1.08998 * 110.72240 * 88.06517 * 10 8 7 37 37 H 1.08999 * 110.87618 * 324.85366 * 10 8 7 38 38 H 1.09005 * 109.46876 * 300.66343 * 13 11 10 39 39 H 1.08995 * 109.46800 * 60.66080 * 13 11 10 40 40 H 1.08997 * 109.47253 * 180.66568 * 13 11 10 41 41 H 1.09001 * 109.46953 * 299.99667 * 17 15 14 42 42 H 1.09000 * 109.47318 * 59.99264 * 17 15 14 43 43 H 0.97001 * 119.99701 * 180.02562 * 22 21 19 44 44 H 1.09006 * 110.36824 * 94.48688 * 27 14 11 45 45 H 1.08998 * 110.37021 * 216.80393 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5782 0.6478 0.0061 5 6 3.5765 -0.6548 0.0009 6 6 4.8004 -1.5340 0.0015 7 7 5.1977 -1.8193 1.3866 8 6 6.3906 -2.6756 1.4265 9 1 6.4185 -3.3434 0.5655 10 6 6.4563 -3.4764 2.7538 11 6 7.9682 -3.7317 2.9290 12 1 8.2214 -4.7258 2.5605 13 6 8.3520 -3.6107 4.4052 14 7 8.6771 -2.7114 2.1428 15 6 10.0148 -2.6042 2.0194 16 8 10.7413 -3.3925 2.5865 17 6 10.6082 -1.5038 1.1777 18 16 12.4138 -1.6253 1.2113 19 6 12.8315 -0.2613 0.1771 20 1 12.0511 0.3479 -0.2547 21 6 14.1634 0.0296 -0.0837 22 7 15.1144 -0.7132 0.4421 23 14 14.6061 1.4761 -1.1796 24 1 14.0752 2.7288 -0.5846 25 1 16.0832 1.5726 -1.2990 26 1 14.0122 1.2770 -2.5260 27 6 7.6824 -1.8215 1.5168 28 8 2.3074 -1.0840 0.0005 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.9822 2.1112 -0.0004 33 1 5.6149 -1.0233 -0.5122 34 1 4.5764 -2.4689 -0.5121 35 1 5.3484 -0.9655 1.9027 36 1 5.9142 -4.4178 2.6635 37 1 6.0662 -2.8864 3.5831 38 1 8.1032 -2.6121 4.7646 39 1 7.8035 -4.3528 4.9852 40 1 9.4228 -3.7808 4.5173 41 1 10.2561 -1.6019 0.1508 42 1 10.3019 -0.5365 1.5759 43 1 16.0452 -0.5097 0.2601 44 1 7.5157 -0.9419 2.1388 45 1 8.0115 -1.5257 0.5207 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755669006.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:06 Heat of formation + Delta-G solvation = -35.612288 kcal Electronic energy + Delta-G solvation = -26241.696704 eV Core-core repulsion = 22385.995524 eV Total energy + Delta-G solvation = -3855.701179 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.30633 -41.30062 -39.03097 -36.59818 -35.66999 -34.60477 -33.51360 -33.31167 -31.26785 -30.23581 -28.27994 -27.67848 -26.79149 -25.70158 -23.42243 -23.08275 -22.14141 -21.82557 -20.37412 -19.51182 -18.45345 -17.96888 -17.88873 -17.31067 -16.89794 -16.63112 -16.23713 -15.97559 -15.66950 -15.57799 -15.19422 -15.03986 -14.57249 -14.36772 -14.22934 -14.02275 -13.94260 -13.77585 -13.55796 -13.49544 -13.21185 -13.17336 -13.12805 -12.91773 -12.88333 -12.61446 -12.42684 -12.36904 -11.91876 -11.76532 -11.68950 -11.55112 -11.14768 -10.91995 -10.31147 -9.82914 -9.70541 -9.51023 -8.69713 -8.36258 -6.14992 0.41212 1.21941 1.42335 1.42812 1.53024 1.55712 1.60311 1.71558 2.04858 2.25653 2.88038 2.97557 3.16641 3.26457 3.52523 3.60408 3.83319 3.89389 3.99529 4.08645 4.12769 4.17384 4.22880 4.25546 4.36868 4.39077 4.44068 4.53349 4.63221 4.69788 4.70704 4.72725 4.73282 4.94719 5.03920 5.06543 5.15268 5.21085 5.29761 5.33960 5.39228 5.49054 5.77148 6.11687 6.17562 6.37908 6.73135 7.04567 7.12305 8.72704 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.011195 B = 0.002375 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.442762 B =11786.987752 C =14038.414681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.045 4.045 3 C -0.068 4.068 4 N -0.505 5.505 5 C 0.182 3.818 6 C 0.154 3.846 7 N -0.666 5.666 8 C 0.091 3.909 9 H 0.113 0.887 10 C -0.099 4.099 11 C 0.128 3.872 12 H 0.070 0.930 13 C -0.159 4.159 14 N -0.610 5.610 15 C 0.547 3.453 16 O -0.560 6.560 17 C -0.121 4.121 18 S -0.147 6.147 19 C -0.547 4.547 20 H 0.081 0.919 21 C 0.014 3.986 22 N -0.910 5.910 23 Si 0.998 3.002 24 H -0.263 1.263 25 H -0.278 1.278 26 H -0.261 1.261 27 C 0.065 3.935 28 O -0.207 6.207 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.202 0.798 33 H 0.085 0.915 34 H 0.121 0.879 35 H 0.352 0.648 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.057 0.943 39 H 0.089 0.911 40 H 0.033 0.967 41 H 0.105 0.895 42 H 0.101 0.899 43 H 0.272 0.728 44 H 0.078 0.922 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.963 -0.359 -0.488 33.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.098 4.098 3 C -0.206 4.206 4 N -0.235 5.235 5 C -0.025 4.025 6 C 0.025 3.975 7 N -0.298 5.298 8 C -0.019 4.019 9 H 0.131 0.869 10 C -0.137 4.137 11 C 0.025 3.975 12 H 0.088 0.912 13 C -0.217 4.217 14 N -0.345 5.345 15 C 0.335 3.665 16 O -0.438 6.438 17 C -0.273 4.273 18 S 0.080 5.920 19 C -0.695 4.695 20 H 0.099 0.901 21 C -0.191 4.191 22 N -0.546 5.546 23 Si 0.820 3.180 24 H -0.187 1.187 25 H -0.203 1.203 26 H -0.186 1.186 27 C -0.060 4.060 28 O -0.093 6.093 29 H 0.101 0.899 30 H 0.124 0.876 31 H 0.125 0.875 32 H 0.219 0.781 33 H 0.103 0.897 34 H 0.139 0.861 35 H 0.172 0.828 36 H 0.125 0.875 37 H 0.108 0.892 38 H 0.076 0.924 39 H 0.108 0.892 40 H 0.052 0.948 41 H 0.123 0.877 42 H 0.119 0.881 43 H 0.081 0.919 44 H 0.096 0.904 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -32.567 -1.770 0.433 32.618 hybrid contribution 0.272 2.037 -1.284 2.424 sum -32.295 0.268 -0.851 32.307 Atomic orbital electron populations 1.20503 0.81102 1.05253 1.05567 1.24282 0.96661 0.83904 1.04942 1.23492 0.87344 1.01803 1.07965 1.70431 1.24673 1.10055 1.18389 1.26354 0.84860 0.89968 1.01316 1.20418 0.87642 0.97801 0.91685 1.60545 1.34770 1.22612 1.11856 1.22751 0.84822 0.94187 1.00186 0.86864 1.22664 0.91248 1.02304 0.97481 1.21804 0.92660 0.91542 0.91483 0.91212 1.22091 1.01326 1.02653 0.95592 1.48402 1.03657 1.32195 1.50239 1.19712 0.81278 0.84812 0.80698 1.90679 1.60111 1.44493 1.48487 1.23323 1.00590 1.00456 1.02884 1.85553 0.97736 1.42437 1.66259 1.23145 0.95613 1.15961 1.34795 0.90088 1.26133 0.95038 1.00369 0.97579 1.70176 1.00717 1.39967 1.43762 0.85010 0.77311 0.77400 0.78323 1.18736 1.20250 1.18594 1.23388 0.89578 0.94019 0.98968 1.84416 1.18082 1.37277 1.69540 0.89858 0.87568 0.87502 0.78127 0.89694 0.86089 0.82774 0.87503 0.89163 0.92433 0.89219 0.94765 0.87697 0.88108 0.91938 0.90353 0.89905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.43 71.23 0.74 0.41 16 2 C -0.04 -0.63 7.39 24.79 0.18 -0.45 16 3 C -0.07 -1.12 11.80 83.39 0.98 -0.13 16 4 N -0.51 -10.63 11.29 -303.83 -3.43 -14.06 16 5 C 0.18 3.29 7.86 88.34 0.69 3.98 16 6 C 0.15 1.93 6.17 85.56 0.53 2.46 16 7 N -0.67 -8.26 6.40 -488.03 -3.12 -11.39 16 8 C 0.09 1.18 3.40 46.38 0.16 1.34 16 9 H 0.11 1.26 7.83 -2.39 -0.02 1.24 16 10 C -0.10 -1.32 6.18 31.78 0.20 -1.12 16 11 C 0.13 2.82 3.45 45.34 0.16 2.97 16 12 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 13 C -0.16 -3.74 9.11 71.98 0.66 -3.08 16 14 N -0.61 -16.62 3.06 -787.60 -2.41 -19.03 16 15 C 0.55 21.27 7.66 87.66 0.67 21.95 16 16 O -0.56 -26.75 14.89 -3.02 -0.05 -26.79 16 17 C -0.12 -5.03 5.16 71.24 0.37 -4.67 16 18 S -0.15 -8.34 20.57 -56.49 -1.16 -9.50 16 19 C -0.55 -31.72 9.50 67.95 0.65 -31.08 16 20 H 0.08 4.37 7.80 -2.91 -0.02 4.34 16 21 C 0.01 0.79 5.49 84.86 0.47 1.26 16 22 N -0.91 -56.41 13.22 21.65 0.29 -56.13 16 23 Si 1.00 44.05 29.55 68.60 2.03 46.08 16 24 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 25 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 26 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 27 C 0.06 1.21 6.29 86.93 0.55 1.76 16 28 O -0.21 -3.74 10.78 -3.73 -0.04 -3.79 16 29 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.20 2.17 8.06 -2.91 -0.02 2.15 16 33 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.12 1.10 8.09 -2.39 -0.02 1.09 16 35 H 0.35 4.72 8.18 -89.69 -0.73 3.99 16 36 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.09 1.15 7.85 -2.39 -0.02 1.13 16 38 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.03 1.08 6.87 -2.39 -0.02 1.07 16 41 H 0.10 3.94 7.85 -2.39 -0.02 3.93 16 42 H 0.10 3.88 8.14 -2.40 -0.02 3.86 16 43 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 44 H 0.08 1.38 7.75 -2.38 -0.02 1.37 16 45 H 0.08 1.52 7.48 -2.39 -0.02 1.51 16 Total: -1.00 -82.38 390.33 -0.64 -83.02 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.27 Total: 16.00 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 7.00 Total: -4.41 kcal Atomic # 7 Polarization: -91.92 SS G_CDS: -8.68 Total: -100.60 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -0.09 Total: -30.58 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: -8.34 SS G_CDS: -1.16 Total: -9.50 kcal Total: -82.38 -0.64 -83.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755669006.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.404 kcal (2) G-P(sol) polarization free energy of solvation -82.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds