Wall clock time and date at job start Tue Mar 31 2020 22:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34328 * 126.44110 * 2 1 4 4 N 1.34484 * 107.66797 * 179.72810 * 3 2 1 5 5 C 1.30249 * 108.69781 * 0.41816 * 4 3 2 6 6 C 1.50702 * 125.61818 * 179.83737 * 5 4 3 7 7 N 1.46904 * 109.47014 * 89.69621 * 6 5 4 8 8 C 1.46899 * 111.00241 * 180.02562 * 7 6 5 9 9 H 1.08998 * 110.91743 * 37.44423 * 8 7 6 10 10 C 1.55156 * 111.00839 * 161.35341 * 8 7 6 11 11 C 1.54327 * 103.02221 * 153.38068 * 10 8 7 12 12 H 1.09005 * 109.99076 * 218.66730 * 11 10 8 13 13 C 1.52994 * 109.78079 * 97.49705 * 11 10 8 14 14 N 1.47022 * 107.26447 * 338.13784 * 11 10 8 15 15 C 1.34780 * 125.64445 * 178.85381 * 14 11 10 16 16 O 1.21280 * 120.00423 * 359.71250 * 15 14 11 17 17 C 1.50701 * 119.99795 * 179.71926 * 15 14 11 18 18 S 1.81002 * 109.47156 * 179.97438 * 17 15 14 19 19 C 1.76193 * 100.00049 * 180.02562 * 18 17 15 20 20 H 1.08005 * 120.00026 * 359.97438 * 19 18 17 21 21 C 1.38806 * 120.00056 * 180.02562 * 19 18 17 22 22 N 1.31623 * 119.99640 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00053 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.47315 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47332 * 119.99854 * 23 21 19 26 26 H 1.48499 * 109.47328 * 240.00154 * 23 21 19 27 27 C 1.47417 * 108.70718 * 358.58681 * 14 11 10 28 28 O 1.33964 * 108.76507 * 359.58270 * 5 4 3 29 29 H 1.09007 * 109.46727 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46938 * 300.00014 * 1 2 3 31 31 H 1.08995 * 109.47033 * 60.00362 * 1 2 3 32 32 H 1.08000 * 126.16767 * 359.97438 * 3 2 1 33 33 H 1.08998 * 109.47127 * 329.70218 * 6 5 4 34 34 H 1.08999 * 109.47697 * 209.69543 * 6 5 4 35 35 H 1.00909 * 110.99796 * 56.04907 * 7 6 5 36 36 H 1.09000 * 110.71517 * 271.94460 * 10 8 7 37 37 H 1.09003 * 110.71734 * 35.02772 * 10 8 7 38 38 H 1.08995 * 109.47193 * 300.80255 * 13 11 10 39 39 H 1.09004 * 109.46931 * 60.80688 * 13 11 10 40 40 H 1.09006 * 109.47131 * 180.80442 * 13 11 10 41 41 H 1.09002 * 109.47060 * 299.99722 * 17 15 14 42 42 H 1.09001 * 109.47380 * 59.99809 * 17 15 14 43 43 H 0.97010 * 119.99946 * 180.02562 * 22 21 19 44 44 H 1.09003 * 110.36926 * 143.19213 * 27 14 11 45 45 H 1.09001 * 110.36695 * 265.40811 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5782 0.6478 0.0061 5 6 3.5765 -0.6546 0.0007 6 6 4.8005 -1.5339 0.0012 7 7 5.1978 -1.8193 1.3864 8 6 6.3908 -2.6755 1.4261 9 1 7.0856 -2.4121 0.6287 10 6 7.0823 -2.6020 2.8131 11 6 7.7996 -3.9645 2.9167 12 1 7.7322 -4.3446 3.9361 13 6 9.2669 -3.8092 2.5122 14 7 7.1213 -4.8860 1.9937 15 6 7.4626 -6.1715 1.7752 16 8 8.4065 -6.6566 2.3623 17 6 6.6714 -7.0060 0.8011 18 16 7.3714 -8.6736 0.7279 19 6 6.2867 -9.4092 -0.4498 20 1 5.4852 -8.8286 -0.8822 21 6 6.4617 -10.7352 -0.8210 22 7 7.4381 -11.4429 -0.2935 23 14 5.3113 -11.5153 -2.0690 24 1 4.3045 -10.5154 -2.5070 25 1 6.0944 -11.9770 -3.2432 26 1 4.6200 -12.6739 -1.4485 27 6 6.0020 -4.1732 1.3515 28 8 2.3075 -1.0840 0.0004 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.9821 2.1113 -0.0004 33 1 5.6149 -1.0231 -0.5124 34 1 4.5765 -2.4688 -0.5124 35 1 4.4368 -2.2348 1.9026 36 1 7.8001 -1.7822 2.8431 37 1 6.3433 -2.4948 3.6072 38 1 9.3244 -3.4351 1.4901 39 1 9.7567 -3.1051 3.1850 40 1 9.7651 -4.7768 2.5734 41 1 5.6335 -7.0613 1.1294 42 1 6.7159 -6.5500 -0.1879 43 1 7.5606 -12.3695 -0.5532 44 1 5.8984 -4.4870 0.3128 45 1 5.0751 -4.3538 1.8958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755669007.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:09 Heat of formation + Delta-G solvation = -7.432500 kcal Electronic energy + Delta-G solvation = -26336.479225 eV Core-core repulsion = 22482.000013 eV Total energy + Delta-G solvation = -3854.479212 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.67444 -40.21579 -37.88236 -35.73347 -35.00876 -32.92633 -32.45537 -32.20307 -30.44852 -28.77051 -27.62374 -25.90211 -25.51211 -25.07117 -22.65216 -22.53434 -21.39099 -20.93713 -19.03490 -17.75294 -17.50052 -17.22866 -16.73129 -16.34928 -15.93861 -15.04283 -15.03917 -14.83197 -14.78249 -14.18907 -14.06257 -13.96842 -13.79412 -13.53830 -13.38898 -13.12302 -13.03473 -12.85056 -12.78329 -12.62655 -12.49673 -12.06635 -11.82013 -11.64942 -11.58484 -11.11355 -11.09439 -11.02813 -10.83826 -10.78046 -10.77981 -9.83367 -9.44763 -9.13458 -9.09897 -8.92114 -8.54256 -8.25678 -6.52884 -6.24252 -3.94900 1.02366 2.20069 2.32276 2.84998 3.03623 3.19403 3.23077 3.28635 3.47815 3.61335 3.83874 4.17288 4.23108 4.36654 4.37772 4.59892 4.62867 4.69452 4.89262 4.91890 4.96042 5.00821 5.02360 5.08639 5.11004 5.19112 5.30812 5.40174 5.48087 5.50199 5.58069 5.62009 5.67387 5.69563 5.76834 5.85199 5.93317 6.06419 6.09216 6.29235 6.38087 6.54706 6.73559 7.40024 7.57012 7.64367 8.32660 8.54384 9.21125 10.83213 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.009828 B = 0.002551 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2848.298324 B =10972.705470 C =13507.636158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.045 4.045 3 C -0.046 4.046 4 N -0.462 5.462 5 C 0.188 3.812 6 C 0.155 3.845 7 N -0.668 5.668 8 C 0.078 3.922 9 H 0.102 0.898 10 C -0.113 4.113 11 C 0.135 3.865 12 H 0.075 0.925 13 C -0.164 4.164 14 N -0.619 5.619 15 C 0.549 3.451 16 O -0.511 6.511 17 C -0.147 4.147 18 S -0.059 6.059 19 C -0.535 4.535 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.279 1.279 26 H -0.280 1.280 27 C 0.071 3.929 28 O -0.202 6.202 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.183 0.817 33 H 0.118 0.882 34 H 0.067 0.933 35 H 0.349 0.651 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.055 0.945 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.268 0.732 44 H 0.078 0.922 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.844 25.977 1.998 28.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.099 4.099 3 C -0.185 4.185 4 N -0.191 5.191 5 C -0.019 4.019 6 C 0.026 3.974 7 N -0.300 5.300 8 C -0.032 4.032 9 H 0.120 0.880 10 C -0.152 4.152 11 C 0.031 3.969 12 H 0.093 0.907 13 C -0.222 4.222 14 N -0.357 5.357 15 C 0.338 3.662 16 O -0.384 6.384 17 C -0.298 4.298 18 S 0.167 5.833 19 C -0.683 4.683 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.205 1.205 27 C -0.055 4.055 28 O -0.089 6.089 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.200 0.800 33 H 0.136 0.864 34 H 0.085 0.915 35 H 0.168 0.832 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.078 0.922 44 H 0.096 0.904 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.428 25.887 2.935 27.382 hybrid contribution -3.017 -1.103 -1.776 3.671 sum -11.445 24.784 1.159 27.323 Atomic orbital electron populations 1.20301 0.83938 1.04514 1.03929 1.23519 0.95102 0.84565 1.06672 1.23107 0.87835 1.00425 1.07125 1.70438 1.22873 1.09168 1.16594 1.25995 0.83876 0.90387 1.01621 1.20309 0.89384 0.96040 0.91665 1.60524 1.08451 1.49315 1.11670 1.22810 0.92057 0.88826 0.99556 0.87962 1.22698 0.99793 0.96259 0.96440 1.21534 0.92926 0.88455 0.93952 0.90666 1.22159 0.95394 1.03371 1.01258 1.48475 1.32014 1.10670 1.44576 1.20005 0.84248 0.79545 0.82414 1.90696 1.28425 1.70260 1.49054 1.23519 1.02797 1.03524 0.99954 1.85407 1.42379 0.98442 1.57054 1.22887 1.17661 0.99423 1.28320 0.90958 1.24995 0.95871 0.96084 0.96652 1.70027 1.29507 1.09139 1.41531 0.86116 0.80044 0.79052 0.80275 1.19644 1.20531 1.20546 1.23053 0.90666 0.92818 0.98926 1.84406 1.17955 1.36744 1.69748 0.90264 0.89217 0.89259 0.79978 0.86411 0.91543 0.83156 0.89326 0.90201 0.92617 0.91931 0.90672 0.89493 0.89470 0.92209 0.90363 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.29 10.43 36.01 0.38 0.09 16 2 C -0.05 -0.37 7.39 -35.69 -0.26 -0.63 16 3 C -0.05 -0.40 11.80 -17.77 -0.21 -0.61 16 4 N -0.46 -5.10 11.29 -11.10 -0.13 -5.23 16 5 C 0.19 1.86 7.85 -12.95 -0.10 1.75 16 6 C 0.16 1.17 6.18 -4.97 -0.03 1.14 16 7 N -0.67 -5.07 6.36 -105.72 -0.67 -5.74 16 8 C 0.08 0.63 3.32 -65.56 -0.22 0.41 16 9 H 0.10 0.79 7.92 -51.93 -0.41 0.38 16 10 C -0.11 -0.94 6.18 -24.90 -0.15 -1.10 16 11 C 0.14 1.57 3.51 -66.95 -0.23 1.34 16 12 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 13 C -0.16 -1.94 9.05 37.15 0.34 -1.60 16 14 N -0.62 -8.63 3.08 -163.01 -0.50 -9.13 16 15 C 0.55 10.43 7.65 -10.98 -0.08 10.35 16 16 O -0.51 -11.59 14.75 5.56 0.08 -11.51 16 17 C -0.15 -3.00 5.16 36.01 0.19 -2.81 16 18 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16 19 C -0.53 -15.17 9.50 30.94 0.29 -14.88 16 20 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.08 13.22 55.49 0.73 -25.34 16 23 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 C 0.07 0.72 6.27 -2.53 -0.02 0.71 16 28 O -0.20 -2.01 10.78 5.37 0.06 -1.95 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.18 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.12 0.82 8.09 -51.93 -0.42 0.39 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.35 2.55 8.30 -39.29 -0.33 2.22 16 36 H 0.09 0.66 7.83 -51.93 -0.41 0.25 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 1.15 6.74 -51.93 -0.35 0.80 16 41 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 42 H 0.09 1.64 7.85 -51.91 -0.41 1.24 16 43 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.08 0.78 7.48 -51.93 -0.39 0.40 16 45 H 0.07 0.64 7.81 -51.93 -0.41 0.23 16 LS Contribution 390.18 15.07 5.88 5.88 Total: -1.00 -36.13 390.18 -8.88 -45.01 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -6.89 Total: -0.58 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -0.22 Total: -3.87 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: -0.57 Total: -45.45 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.14 Total: -13.46 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.13 -8.88 -45.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755669007.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.581 kcal (2) G-P(sol) polarization free energy of solvation -36.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds