Wall clock time and date at job start Tue Mar 31 2020 23:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.46648 * 2 1 4 4 S 1.70626 * 124.52213 * 269.99358 * 3 2 1 5 5 C 1.75831 * 91.56373 * 180.02562 * 4 3 2 6 6 C 1.46579 * 125.45912 * 180.02562 * 5 4 3 7 7 O 1.21703 * 119.99987 * 180.02562 * 6 5 4 8 8 N 1.34771 * 119.99929 * 0.02600 * 6 5 4 9 9 N 1.40097 * 120.00134 * 180.02562 * 8 6 5 10 10 C 1.34781 * 120.00020 * 179.97438 * 9 8 6 11 11 O 1.21278 * 120.00039 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.99893 * 179.97438 * 10 9 8 13 13 N 1.46894 * 109.47262 * 180.02562 * 12 10 9 14 14 C 1.46902 * 111.00303 * 66.04654 * 13 12 10 15 15 C 1.46902 * 111.00378 * 190.00198 * 13 12 10 16 16 C 1.50698 * 109.47144 * 169.99960 * 15 13 12 17 17 H 1.07995 * 120.00314 * 359.97438 * 16 15 13 18 18 C 1.37878 * 119.99830 * 180.02562 * 16 15 13 19 19 N 1.31519 * 120.00181 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00017 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46947 * 90.00003 * 20 18 16 22 22 H 1.48499 * 109.47058 * 209.99561 * 20 18 16 23 23 H 1.48494 * 109.47289 * 329.99616 * 20 18 16 24 24 C 1.36652 * 109.08297 * 359.76332 * 5 4 3 25 25 C 1.33817 * 124.52629 * 90.00656 * 3 2 1 26 26 C 1.50703 * 122.44620 * 359.96913 * 25 3 2 27 27 H 1.09006 * 109.46981 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47211 * 299.99976 * 1 2 3 29 29 H 1.08996 * 109.47548 * 60.00217 * 1 2 3 30 30 H 1.08998 * 109.47211 * 240.00024 * 2 1 3 31 31 H 1.08996 * 109.47548 * 119.99783 * 2 1 3 32 32 H 0.97003 * 120.00423 * 359.97438 * 8 6 5 33 33 H 0.96996 * 120.00017 * 359.97438 * 9 8 6 34 34 H 1.09007 * 109.47192 * 300.00284 * 12 10 9 35 35 H 1.08997 * 109.47128 * 59.99743 * 12 10 9 36 36 H 1.08999 * 109.46989 * 59.99856 * 14 13 12 37 37 H 1.08993 * 109.47524 * 180.02562 * 14 13 12 38 38 H 1.09003 * 109.46867 * 300.00353 * 14 13 12 39 39 H 1.09003 * 109.46671 * 289.99750 * 15 13 12 40 40 H 1.09002 * 109.47112 * 49.99786 * 15 13 12 41 41 H 0.96996 * 120.00606 * 180.02562 * 19 18 16 42 42 H 1.07997 * 123.34984 * 180.25479 * 24 5 4 43 43 H 1.09002 * 109.47152 * 90.00421 * 26 25 3 44 44 H 1.09001 * 109.46980 * 330.00522 * 26 25 3 45 45 H 1.09004 * 109.47113 * 210.00503 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 16 2.3546 2.3325 -1.4058 5 6 2.8469 3.7233 -0.4492 6 6 3.3010 5.0084 -0.9884 7 8 3.6197 5.9071 -0.2322 8 7 3.3656 5.1948 -2.3216 9 7 3.8002 6.4229 -2.8370 10 6 3.8653 6.6091 -4.1703 11 8 3.5473 5.7137 -4.9239 12 6 4.3322 7.9304 -4.7246 13 7 4.3129 7.8799 -6.1926 14 6 2.9388 7.7552 -6.6971 15 6 4.9806 9.0547 -6.7687 16 6 5.1598 8.8538 -8.2515 17 1 4.8128 7.9443 -8.7190 18 6 5.7677 9.8309 -9.0110 19 7 6.1907 10.9383 -8.4416 20 14 5.9905 9.5816 -10.8488 21 1 4.8035 10.1107 -11.5676 22 1 7.2063 10.3036 -11.3025 23 1 6.1388 8.1326 -11.1375 24 6 2.7327 3.4161 0.8774 25 6 2.2851 2.1359 1.1025 26 6 2.0881 1.5803 2.4894 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.1120 4.4784 -2.9244 33 1 4.0542 7.1392 -2.2343 34 1 3.6689 8.7239 -4.3800 35 1 5.3470 8.1304 -4.3809 36 1 2.3522 8.6133 -6.3691 37 1 2.9535 7.7195 -7.7863 38 1 2.4913 6.8398 -6.3099 39 1 4.3713 9.9413 -6.5932 40 1 5.9556 9.1851 -6.2992 41 1 6.6181 11.6259 -8.9759 42 1 2.9727 4.1091 1.6701 43 1 3.0094 1.1035 2.8240 44 1 1.2831 0.8455 2.4755 45 1 1.8294 2.3899 3.1718 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083218049.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:59 Heat of formation + Delta-G solvation = -6.252762 kcal Electronic energy + Delta-G solvation = -25816.470215 eV Core-core repulsion = 21962.042160 eV Total energy + Delta-G solvation = -3854.428055 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.50424 -39.43396 -38.65627 -36.23597 -35.19227 -34.28890 -32.56030 -31.97076 -30.57005 -28.30118 -27.74173 -26.90412 -25.16067 -24.02787 -22.88306 -21.66792 -21.28164 -20.22293 -19.02683 -18.54248 -17.78607 -16.95634 -16.31578 -16.05124 -15.84011 -15.38349 -15.10381 -14.83680 -14.67869 -14.54141 -14.17321 -14.07615 -13.94536 -13.60313 -13.56031 -13.08506 -12.67523 -12.62390 -12.50447 -12.20261 -11.89835 -11.82835 -11.72112 -11.63093 -11.29669 -11.18196 -11.08318 -10.84083 -10.73979 -10.64381 -10.53593 -10.03078 -9.65823 -9.20078 -9.13471 -8.83662 -8.46381 -8.42460 -7.31804 -6.04313 -4.05145 0.06837 1.01200 1.43115 1.66180 1.88810 2.59251 2.92373 3.32788 3.38833 3.44299 3.81419 4.15455 4.36254 4.44573 4.48536 4.68034 4.74306 4.87614 4.93531 4.97381 5.00424 5.19370 5.22965 5.31981 5.32877 5.38335 5.45638 5.50439 5.62859 5.67732 5.71733 5.87887 6.02050 6.25001 6.34889 6.49067 6.56134 6.86800 7.17762 7.25794 7.40351 7.69486 7.76759 8.00534 8.12660 8.34787 8.48510 9.02488 9.58962 11.06671 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027168 B = 0.001820 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.369728 B =15382.606016 C =16134.653689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.057 4.057 3 C -0.189 4.189 4 S 0.208 5.792 5 C -0.266 4.266 6 C 0.592 3.408 7 O -0.532 6.532 8 N -0.517 5.517 9 N -0.530 5.530 10 C 0.517 3.483 11 O -0.516 6.516 12 C 0.049 3.951 13 N -0.522 5.522 14 C 0.031 3.969 15 C 0.193 3.807 16 C -0.506 4.506 17 H 0.065 0.935 18 C 0.055 3.945 19 N -0.899 5.899 20 Si 0.900 3.100 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.272 1.272 24 C -0.037 4.037 25 C -0.123 4.123 26 C -0.094 4.094 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.428 0.572 33 H 0.431 0.569 34 H 0.060 0.940 35 H 0.106 0.894 36 H 0.007 0.993 37 H 0.076 0.924 38 H 0.063 0.937 39 H -0.005 1.005 40 H 0.032 0.968 41 H 0.262 0.738 42 H 0.155 0.845 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.813 -20.777 22.659 32.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.096 4.096 3 C -0.309 4.309 4 S 0.478 5.522 5 C -0.388 4.388 6 C 0.379 3.621 7 O -0.409 6.409 8 N -0.264 5.264 9 N -0.282 5.282 10 C 0.304 3.696 11 O -0.388 6.388 12 C -0.084 4.084 13 N -0.248 5.248 14 C -0.118 4.118 15 C 0.068 3.932 16 C -0.545 4.545 17 H 0.084 0.916 18 C -0.146 4.146 19 N -0.539 5.539 20 Si 0.728 3.272 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.197 1.197 24 C -0.071 4.071 25 C -0.136 4.136 26 C -0.153 4.153 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.270 0.730 33 H 0.274 0.726 34 H 0.078 0.922 35 H 0.124 0.876 36 H 0.026 0.974 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.013 0.987 40 H 0.051 0.949 41 H 0.071 0.929 42 H 0.173 0.827 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.553 -21.301 20.788 31.579 hybrid contribution -0.096 1.047 0.827 1.338 sum -10.649 -20.254 21.615 31.478 Atomic orbital electron populations 1.21801 0.93897 1.02313 1.02713 1.20173 0.96486 0.89220 1.03714 1.24133 1.07335 1.02175 0.97228 1.83217 1.59645 1.02164 1.07132 1.24083 1.17748 0.98684 0.98245 1.16881 0.78370 0.86478 0.80413 1.90855 1.50019 1.42602 1.57427 1.44573 1.67242 1.08584 1.05965 1.45249 1.69427 1.06401 1.07139 1.21534 0.77322 0.91598 0.79130 1.90671 1.47436 1.43823 1.56844 1.21857 1.02548 0.90723 0.93321 1.61858 1.17470 1.44905 1.00519 1.22395 0.88312 0.98846 1.02198 1.19819 0.93488 0.84493 0.95371 1.21136 1.38189 1.03170 0.91994 0.91637 1.24986 0.95598 0.95105 0.98960 1.69951 1.40528 1.07466 1.35948 0.86462 0.77502 0.78350 0.84913 1.20735 1.21260 1.19714 1.20601 0.95882 0.95753 0.94898 1.18657 1.04478 0.93795 0.96667 1.20525 1.02223 1.01140 0.91363 0.91729 0.92123 0.92245 0.90431 0.89578 0.72983 0.72640 0.92180 0.87620 0.97426 0.90496 0.91815 0.98739 0.94945 0.92893 0.82746 0.91089 0.91318 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.89 37.16 0.37 -0.29 16 2 C -0.06 -0.28 5.72 -27.88 -0.16 -0.44 16 3 C -0.19 -1.34 5.53 -35.86 -0.20 -1.54 16 4 S 0.21 1.70 22.10 -107.50 -2.38 -0.67 16 5 C -0.27 -2.76 6.45 -36.79 -0.24 -3.00 16 6 C 0.59 7.56 7.90 -12.90 -0.10 7.45 16 7 O -0.53 -8.05 16.68 5.19 0.09 -7.96 16 8 N -0.52 -6.64 6.25 30.24 0.19 -6.45 16 9 N -0.53 -7.17 6.26 31.22 0.20 -6.97 16 10 C 0.52 8.38 7.67 -10.98 -0.08 8.30 16 11 O -0.52 -9.88 14.15 5.56 0.08 -9.80 16 12 C 0.05 0.83 5.45 -4.98 -0.03 0.80 16 13 N -0.52 -11.46 4.49 -245.83 -1.10 -12.56 16 14 C 0.03 0.64 9.03 60.07 0.54 1.18 16 15 C 0.19 4.95 4.72 -4.98 -0.02 4.92 16 16 C -0.51 -14.26 8.46 -34.44 -0.29 -14.55 16 17 H 0.07 1.85 7.12 -52.49 -0.37 1.48 16 18 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -26.46 13.29 55.43 0.74 -25.72 16 20 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 24 C -0.04 -0.34 9.79 -40.43 -0.40 -0.74 16 25 C -0.12 -0.92 5.78 -106.45 -0.62 -1.53 16 26 C -0.09 -0.46 9.56 36.01 0.34 -0.12 16 27 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 0.27 7.80 -51.93 -0.41 -0.14 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.33 7.25 -51.93 -0.38 -0.05 16 32 H 0.43 5.21 7.11 -182.60 -1.30 3.91 16 33 H 0.43 5.14 8.00 -182.60 -1.46 3.68 16 34 H 0.06 0.92 8.12 -51.92 -0.42 0.49 16 35 H 0.11 1.64 7.93 -51.93 -0.41 1.23 16 36 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 37 H 0.08 1.69 6.76 -51.93 -0.35 1.34 16 38 H 0.06 1.25 5.88 -51.93 -0.31 0.95 16 39 H -0.01 -0.14 8.12 -51.93 -0.42 -0.56 16 40 H 0.03 0.87 7.93 -51.93 -0.41 0.45 16 41 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 43 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.07 0.27 6.86 -51.93 -0.36 -0.09 16 45 H 0.07 0.31 8.13 -51.93 -0.42 -0.12 16 LS Contribution 389.59 15.07 5.87 5.87 Total: -1.00 -33.88 389.59 -11.01 -44.89 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -8.69 Total: 0.76 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -0.98 Total: 1.91 kcal Atomic # 7 Polarization: -51.73 SS G_CDS: 0.02 Total: -51.71 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: 0.17 Total: -17.77 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.38 Total: -0.67 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.88 -11.01 -44.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083218049.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.640 kcal (2) G-P(sol) polarization free energy of solvation -33.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds