Wall clock time and date at job start Tue Mar 31 2020 23:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.46648 * 2 1 4 4 S 1.70626 * 124.52213 * 269.99358 * 3 2 1 5 5 C 1.75831 * 91.56373 * 180.02562 * 4 3 2 6 6 C 1.46579 * 125.45912 * 180.02562 * 5 4 3 7 7 O 1.21703 * 119.99987 * 180.02562 * 6 5 4 8 8 N 1.34771 * 119.99929 * 0.02600 * 6 5 4 9 9 N 1.40097 * 120.00134 * 180.02562 * 8 6 5 10 10 C 1.34781 * 120.00020 * 179.97438 * 9 8 6 11 11 O 1.21278 * 120.00039 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.99893 * 179.97438 * 10 9 8 13 13 N 1.46894 * 109.47262 * 180.02562 * 12 10 9 14 14 C 1.46902 * 111.00303 * 66.04654 * 13 12 10 15 15 C 1.46902 * 111.00378 * 190.00198 * 13 12 10 16 16 C 1.50698 * 109.47144 * 169.99960 * 15 13 12 17 17 H 1.07995 * 120.00314 * 359.97438 * 16 15 13 18 18 C 1.37878 * 119.99830 * 180.02562 * 16 15 13 19 19 N 1.31519 * 120.00181 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00017 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46947 * 90.00003 * 20 18 16 22 22 H 1.48499 * 109.47058 * 209.99561 * 20 18 16 23 23 H 1.48494 * 109.47289 * 329.99616 * 20 18 16 24 24 C 1.36652 * 109.08297 * 359.76332 * 5 4 3 25 25 C 1.33817 * 124.52629 * 90.00656 * 3 2 1 26 26 C 1.50703 * 122.44620 * 359.96913 * 25 3 2 27 27 H 1.09006 * 109.46981 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47211 * 299.99976 * 1 2 3 29 29 H 1.08996 * 109.47548 * 60.00217 * 1 2 3 30 30 H 1.08998 * 109.47211 * 240.00024 * 2 1 3 31 31 H 1.08996 * 109.47548 * 119.99783 * 2 1 3 32 32 H 0.97003 * 120.00423 * 359.97438 * 8 6 5 33 33 H 0.96996 * 120.00017 * 359.97438 * 9 8 6 34 34 H 1.09007 * 109.47192 * 300.00284 * 12 10 9 35 35 H 1.08997 * 109.47128 * 59.99743 * 12 10 9 36 36 H 1.08999 * 109.46989 * 59.99856 * 14 13 12 37 37 H 1.08993 * 109.47524 * 180.02562 * 14 13 12 38 38 H 1.09003 * 109.46867 * 300.00353 * 14 13 12 39 39 H 1.09003 * 109.46671 * 289.99750 * 15 13 12 40 40 H 1.09002 * 109.47112 * 49.99786 * 15 13 12 41 41 H 0.96996 * 120.00606 * 180.02562 * 19 18 16 42 42 H 1.07997 * 123.34984 * 180.25479 * 24 5 4 43 43 H 1.09002 * 109.47152 * 90.00421 * 26 25 3 44 44 H 1.09001 * 109.46980 * 330.00522 * 26 25 3 45 45 H 1.09004 * 109.47113 * 210.00503 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 16 2.3546 2.3325 -1.4058 5 6 2.8469 3.7233 -0.4492 6 6 3.3010 5.0084 -0.9884 7 8 3.6197 5.9071 -0.2322 8 7 3.3656 5.1948 -2.3216 9 7 3.8002 6.4229 -2.8370 10 6 3.8653 6.6091 -4.1703 11 8 3.5473 5.7137 -4.9239 12 6 4.3322 7.9304 -4.7246 13 7 4.3129 7.8799 -6.1926 14 6 2.9388 7.7552 -6.6971 15 6 4.9806 9.0547 -6.7687 16 6 5.1598 8.8538 -8.2515 17 1 4.8128 7.9443 -8.7190 18 6 5.7677 9.8309 -9.0110 19 7 6.1907 10.9383 -8.4416 20 14 5.9905 9.5816 -10.8488 21 1 4.8035 10.1107 -11.5676 22 1 7.2063 10.3036 -11.3025 23 1 6.1388 8.1326 -11.1375 24 6 2.7327 3.4161 0.8774 25 6 2.2851 2.1359 1.1025 26 6 2.0881 1.5803 2.4894 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.1120 4.4784 -2.9244 33 1 4.0542 7.1392 -2.2343 34 1 3.6689 8.7239 -4.3800 35 1 5.3470 8.1304 -4.3809 36 1 2.3522 8.6133 -6.3691 37 1 2.9535 7.7195 -7.7863 38 1 2.4913 6.8398 -6.3099 39 1 4.3713 9.9413 -6.5932 40 1 5.9556 9.1851 -6.2992 41 1 6.6181 11.6259 -8.9759 42 1 2.9727 4.1091 1.6701 43 1 3.0094 1.1035 2.8240 44 1 1.2831 0.8455 2.4755 45 1 1.8294 2.3899 3.1718 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083218049.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:58 Heat of formation + Delta-G solvation = -29.623526 kcal Electronic energy + Delta-G solvation = -25817.483648 eV Core-core repulsion = 21962.042160 eV Total energy + Delta-G solvation = -3855.441487 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.63500 -40.49538 -39.46841 -37.84687 -36.46040 -34.81633 -34.63388 -33.07795 -31.22879 -29.84458 -28.72381 -28.27760 -26.32125 -25.49224 -23.42057 -22.96326 -22.55597 -21.56908 -19.82097 -19.46883 -18.83552 -18.51663 -17.78821 -17.09516 -17.01726 -16.58495 -16.27554 -16.24938 -15.78013 -15.47156 -15.41220 -15.26067 -15.10525 -14.67500 -14.32556 -14.09503 -13.70083 -13.46382 -13.39059 -13.19558 -13.03616 -12.97004 -12.73734 -12.68094 -12.62220 -12.54459 -12.29260 -12.25231 -12.09669 -11.98415 -11.68193 -11.63513 -11.46312 -10.97700 -10.60400 -9.87366 -9.59004 -9.37671 -9.05820 -8.20113 -6.28786 -0.64642 0.34149 0.53471 0.82984 1.12624 1.42390 1.42626 1.43396 1.55339 1.96034 2.41096 2.72673 3.12832 3.31925 3.41817 3.67879 3.81633 4.05402 4.14460 4.25479 4.37606 4.38283 4.42477 4.49604 4.55874 4.69174 4.75816 4.82203 4.87493 5.00729 5.04921 5.10451 5.11487 5.17112 5.27792 5.28775 5.36486 5.40129 5.49247 5.54123 5.65500 6.01360 6.23954 6.27607 6.54931 6.63329 6.85543 7.14697 7.40144 8.90600 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.027168 B = 0.001820 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.369728 B =15382.606016 C =16134.653689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.059 4.059 3 C -0.178 4.178 4 S 0.215 5.785 5 C -0.299 4.299 6 C 0.596 3.404 7 O -0.561 6.561 8 N -0.518 5.518 9 N -0.518 5.518 10 C 0.526 3.474 11 O -0.548 6.548 12 C 0.046 3.954 13 N -0.539 5.539 14 C 0.038 3.962 15 C 0.207 3.793 16 C -0.526 4.526 17 H 0.058 0.942 18 C 0.005 3.995 19 N -0.930 5.930 20 Si 0.967 3.033 21 H -0.273 1.273 22 H -0.280 1.280 23 H -0.269 1.269 24 C -0.033 4.033 25 C -0.133 4.133 26 C -0.093 4.093 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.431 0.569 33 H 0.440 0.560 34 H 0.084 0.916 35 H 0.120 0.880 36 H 0.017 0.983 37 H 0.057 0.943 38 H 0.074 0.926 39 H -0.024 1.024 40 H 0.017 0.983 41 H 0.265 0.735 42 H 0.155 0.845 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.524 -22.654 23.490 34.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.098 4.098 3 C -0.298 4.298 4 S 0.486 5.514 5 C -0.420 4.420 6 C 0.384 3.616 7 O -0.441 6.441 8 N -0.264 5.264 9 N -0.269 5.269 10 C 0.314 3.686 11 O -0.423 6.423 12 C -0.087 4.087 13 N -0.264 5.264 14 C -0.110 4.110 15 C 0.082 3.918 16 C -0.564 4.564 17 H 0.076 0.924 18 C -0.194 4.194 19 N -0.571 5.571 20 Si 0.792 3.208 21 H -0.198 1.198 22 H -0.206 1.206 23 H -0.194 1.194 24 C -0.068 4.068 25 C -0.145 4.145 26 C -0.151 4.151 27 H 0.097 0.903 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.102 0.898 31 H 0.121 0.879 32 H 0.274 0.726 33 H 0.284 0.716 34 H 0.101 0.899 35 H 0.138 0.862 36 H 0.035 0.965 37 H 0.076 0.924 38 H 0.093 0.907 39 H -0.007 1.007 40 H 0.035 0.965 41 H 0.074 0.926 42 H 0.173 0.827 43 H 0.098 0.902 44 H 0.101 0.899 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.275 -23.187 21.655 33.670 hybrid contribution 0.079 1.536 0.709 1.693 sum -11.196 -21.651 22.364 33.079 Atomic orbital electron populations 1.21803 0.93352 1.03184 1.02294 1.20327 0.96829 0.87709 1.04901 1.24534 1.05709 1.03026 0.96503 1.83185 1.59412 1.01361 1.07481 1.23937 1.20313 0.98621 0.99136 1.17224 0.77476 0.87017 0.79880 1.90828 1.51464 1.43832 1.57927 1.44688 1.67386 1.08138 1.06224 1.44959 1.68305 1.07124 1.06529 1.21156 0.77017 0.90803 0.79665 1.90660 1.49189 1.44615 1.57792 1.21914 1.04195 0.92072 0.90477 1.61677 1.18083 1.43074 1.03556 1.22300 0.87932 0.99732 1.00998 1.19475 0.92700 0.85146 0.94505 1.21433 1.38377 1.03036 0.93553 0.92356 1.25834 0.95146 0.94749 1.03643 1.70054 1.41086 1.08205 1.37707 0.85415 0.77765 0.78346 0.79280 1.19817 1.20577 1.19375 1.20817 0.94940 0.96547 0.94460 1.18887 1.04350 0.93113 0.98103 1.20596 1.03186 1.01612 0.89739 0.90255 0.92089 0.93151 0.89772 0.87871 0.72593 0.71595 0.89865 0.86243 0.96497 0.92437 0.90729 1.00657 0.96516 0.92615 0.82729 0.90222 0.89928 0.90777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.89 71.98 0.71 -0.23 16 2 C -0.06 -0.42 5.72 29.85 0.17 -0.25 16 3 C -0.18 -2.20 5.53 24.68 0.14 -2.06 16 4 S 0.21 3.33 22.10 -56.49 -1.25 2.08 16 5 C -0.30 -6.10 6.45 24.08 0.16 -5.95 16 6 C 0.60 15.19 7.90 86.42 0.68 15.87 16 7 O -0.56 -17.07 16.68 -4.36 -0.07 -17.14 16 8 N -0.52 -13.17 6.25 -176.46 -1.10 -14.27 16 9 N -0.52 -13.72 6.26 -173.53 -1.09 -14.81 16 10 C 0.53 16.77 7.67 87.66 0.67 17.44 16 11 O -0.55 -20.82 14.15 -3.02 -0.04 -20.86 16 12 C 0.05 1.54 5.45 85.56 0.47 2.00 16 13 N -0.54 -23.73 4.49 -931.65 -4.18 -27.91 16 14 C 0.04 1.59 9.03 127.69 1.15 2.74 16 15 C 0.21 10.83 4.72 85.56 0.40 11.23 16 16 C -0.53 -29.99 8.46 25.60 0.22 -29.78 16 17 H 0.06 3.34 7.12 -2.91 -0.02 3.32 16 18 C 0.00 0.26 5.46 84.65 0.46 0.72 16 19 N -0.93 -55.14 13.29 21.45 0.28 -54.85 16 20 Si 0.97 44.61 29.54 68.60 2.03 46.64 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 24 C -0.03 -0.57 9.79 21.72 0.21 -0.36 16 25 C -0.13 -1.74 5.78 -21.05 -0.12 -1.86 16 26 C -0.09 -0.69 9.56 71.24 0.68 0.00 16 27 H 0.08 0.29 8.14 -2.38 -0.02 0.28 16 28 H 0.06 0.39 7.80 -2.39 -0.02 0.38 16 29 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.10 0.44 7.25 -2.39 -0.02 0.42 16 32 H 0.43 10.44 7.11 -213.32 -1.52 8.92 16 33 H 0.44 10.19 8.00 -213.33 -1.71 8.48 16 34 H 0.08 2.43 8.12 -2.38 -0.02 2.41 16 35 H 0.12 3.64 7.93 -2.39 -0.02 3.62 16 36 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.06 2.56 6.76 -2.39 -0.02 2.54 16 38 H 0.07 2.92 5.88 -2.39 -0.01 2.90 16 39 H -0.02 -1.34 8.12 -2.39 -0.02 -1.35 16 40 H 0.02 0.91 7.93 -2.39 -0.02 0.90 16 41 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 42 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 43 H 0.08 0.47 8.14 -2.39 -0.02 0.46 16 44 H 0.08 0.39 6.86 -2.39 -0.02 0.37 16 45 H 0.07 0.50 8.13 -2.38 -0.02 0.48 16 Total: -1.00 -72.52 389.59 -1.62 -74.13 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -2.19 Total: 17.49 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 6.00 Total: 9.51 kcal Atomic # 7 Polarization: -105.75 SS G_CDS: -6.09 Total: -111.84 kcal Atomic # 8 Polarization: -37.89 SS G_CDS: -0.12 Total: -38.01 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 16 Polarization: 3.33 SS G_CDS: -1.25 Total: 2.08 kcal Total: -72.52 -1.62 -74.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083218049.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.510 kcal (2) G-P(sol) polarization free energy of solvation -72.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds