Wall clock time and date at job start Tue Mar 31 2020 22:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33643 * 122.74801 * 2 1 4 4 S 1.76204 * 107.92183 * 180.02562 * 3 2 1 5 5 C 1.70983 * 90.28148 * 0.02562 * 4 3 2 6 6 C 1.50696 * 124.91081 * 179.97438 * 5 4 3 7 7 H 1.09009 * 109.70787 * 176.48431 * 6 5 4 8 8 C 1.52882 * 109.62063 * 56.18385 * 6 5 4 9 9 O 1.42962 * 109.29682 * 188.11007 * 8 6 5 10 10 C 1.42960 * 114.16517 * 62.45095 * 9 8 6 11 11 C 1.53294 * 109.22500 * 297.41515 * 10 9 8 12 12 N 1.47154 * 108.38409 * 52.30277 * 11 10 9 13 13 C 1.34771 * 120.98106 * 129.44188 * 12 11 10 14 14 O 1.21587 * 119.99554 * 185.21339 * 13 12 11 15 15 N 1.34771 * 120.00261 * 4.93836 * 13 12 11 16 16 C 1.46499 * 120.00474 * 175.32232 * 15 13 12 17 17 C 1.52989 * 109.47449 * 180.02562 * 16 15 13 18 18 C 1.52998 * 109.47379 * 179.97438 * 17 16 15 19 19 C 1.50701 * 109.47380 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00105 * 0.02562 * 19 18 17 21 21 C 1.37876 * 119.99667 * 180.02562 * 19 18 17 22 22 N 1.31517 * 120.00685 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99516 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47402 * 60.00042 * 23 21 19 25 25 H 1.48507 * 109.46826 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46930 * 299.99532 * 23 21 19 27 27 N 1.29023 * 110.16700 * 0.24419 * 5 4 3 28 28 H 1.09004 * 109.47692 * 89.97289 * 1 2 3 29 29 H 1.09005 * 109.47262 * 209.97672 * 1 2 3 30 30 H 1.08998 * 109.47217 * 329.97235 * 1 2 3 31 31 H 1.07991 * 126.03747 * 0.04326 * 3 2 1 32 32 H 1.09005 * 109.57840 * 68.10127 * 8 6 5 33 33 H 1.08995 * 109.36700 * 307.99586 * 8 6 5 34 34 H 1.09000 * 109.51083 * 177.48877 * 10 9 8 35 35 H 1.09002 * 109.51393 * 57.34494 * 10 9 8 36 36 H 1.08999 * 109.67754 * 292.58292 * 11 10 9 37 37 H 1.08997 * 109.71347 * 172.04438 * 11 10 9 38 38 H 0.97006 * 120.00016 * 355.32735 * 15 13 12 39 39 H 1.09005 * 109.47114 * 300.00141 * 16 15 13 40 40 H 1.09000 * 109.47203 * 59.99665 * 16 15 13 41 41 H 1.08998 * 109.47364 * 300.00266 * 17 16 15 42 42 H 1.09008 * 109.47270 * 60.00020 * 17 16 15 43 43 H 1.09005 * 109.47203 * 300.00111 * 18 17 16 44 44 H 1.09000 * 109.47183 * 59.99677 * 18 17 16 45 45 H 0.96993 * 120.00150 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9333 0.6731 -0.0007 5 6 3.5039 -0.9819 -0.0018 6 6 4.4835 -2.1270 -0.0033 7 1 3.9441 -3.0723 0.0592 8 6 5.4270 -1.9971 1.1926 9 8 6.4666 -2.9722 1.0822 10 6 7.2970 -2.8144 -0.0708 11 6 6.4460 -2.9902 -1.3336 12 7 5.2831 -2.0936 -1.2382 13 6 4.9633 -1.2622 -2.2496 14 8 4.0573 -0.4625 -2.1156 15 7 5.6512 -1.3136 -3.4073 16 6 5.2392 -0.4831 -4.5417 17 6 6.1798 -0.7300 -5.7228 18 6 5.7491 0.1368 -6.9077 19 6 6.6752 -0.1069 -8.0713 20 1 7.4893 -0.8101 -7.9755 21 6 6.4832 0.5679 -9.2582 22 7 5.4915 1.4238 -9.3752 23 14 7.6308 0.2652 -10.7008 24 1 7.5714 -1.1670 -11.0887 25 1 7.2128 1.1067 -11.8508 26 1 9.0201 0.6150 -10.3100 27 7 2.2199 -1.1083 -0.0067 28 1 -0.3634 0.0005 -1.0277 29 1 -0.3634 -0.8902 0.5135 30 1 -0.3633 0.8897 0.5142 31 1 1.8391 2.1307 0.0007 32 1 4.8711 -2.1605 2.1159 33 1 5.8638 -0.9986 1.2015 34 1 8.0867 -3.5656 -0.0563 35 1 7.7407 -1.8188 -0.0664 36 1 6.1076 -4.0237 -1.4072 37 1 7.0362 -2.7336 -2.2133 38 1 6.4191 -1.9005 -3.4896 39 1 4.2199 -0.7408 -4.8294 40 1 5.2814 0.5681 -4.2567 41 1 7.1992 -0.4727 -5.4354 42 1 6.1370 -1.7814 -6.0077 43 1 4.7297 -0.1210 -7.1950 44 1 5.7915 1.1881 -6.6231 45 1 5.3563 1.8982 -10.2103 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190171521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:41 Heat of formation + Delta-G solvation = -9.122721 kcal Electronic energy + Delta-G solvation = -27503.332129 eV Core-core repulsion = 23648.779624 eV Total energy + Delta-G solvation = -3854.552505 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.03608 -39.43315 -38.75371 -35.73516 -35.01820 -33.76152 -32.83913 -31.08356 -30.90828 -28.41978 -27.49544 -26.52249 -25.44084 -23.42480 -23.04449 -22.03824 -20.74450 -20.00568 -19.47873 -18.37497 -17.31147 -16.92170 -16.45666 -16.22967 -16.03565 -15.68774 -15.42361 -15.07499 -14.82867 -14.55904 -14.32227 -14.28602 -13.77079 -13.60314 -13.14395 -13.05010 -12.69384 -12.45763 -12.32675 -12.21112 -11.90947 -11.80525 -11.79832 -11.36721 -11.17547 -10.91608 -10.74771 -10.64978 -10.59085 -10.31234 -9.91294 -9.54195 -9.47528 -9.40408 -9.17102 -8.77212 -8.62125 -8.39486 -7.84613 -6.04103 -4.07580 0.84451 1.62136 1.96488 2.31859 3.02606 3.16453 3.24596 3.29927 3.34909 3.36530 3.76283 3.94688 4.34438 4.42008 4.52464 4.57492 4.68159 4.80539 4.93080 5.07555 5.21460 5.26783 5.29525 5.31539 5.33993 5.46362 5.57686 5.62132 5.72858 5.75814 5.89659 6.02769 6.12874 6.35895 6.44015 6.56902 6.56960 6.64374 6.87687 6.97220 7.60287 7.72950 7.89373 7.92645 7.94223 8.34840 8.56949 8.98807 9.56671 11.07134 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013098 B = 0.002753 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.169551 B =10168.868271 C =11817.111127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.065 3.935 3 C -0.271 4.271 4 S 0.192 5.808 5 C 0.064 3.936 6 C 0.210 3.790 7 H 0.106 0.894 8 C 0.056 3.944 9 O -0.370 6.370 10 C 0.044 3.956 11 C 0.078 3.922 12 N -0.636 5.636 13 C 0.699 3.301 14 O -0.568 6.568 15 N -0.738 5.738 16 C 0.136 3.864 17 C -0.120 4.120 18 C 0.025 3.975 19 C -0.524 4.524 20 H 0.055 0.945 21 C 0.057 3.943 22 N -0.894 5.894 23 Si 0.893 3.107 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 N -0.471 5.471 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.169 0.831 32 H 0.115 0.885 33 H 0.061 0.939 34 H 0.112 0.888 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.391 0.609 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.632 -6.625 25.051 25.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.069 4.069 3 C -0.411 4.411 4 S 0.450 5.550 5 C -0.213 4.213 6 C 0.102 3.898 7 H 0.124 0.876 8 C -0.023 4.023 9 O -0.288 6.288 10 C -0.034 4.034 11 C -0.045 4.045 12 N -0.377 5.377 13 C 0.400 3.600 14 O -0.446 6.446 15 N -0.394 5.394 16 C 0.013 3.987 17 C -0.158 4.158 18 C -0.012 4.012 19 C -0.562 4.562 20 H 0.073 0.927 21 C -0.144 4.144 22 N -0.532 5.532 23 Si 0.721 3.279 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.202 1.202 27 N -0.188 5.188 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.186 0.814 32 H 0.133 0.867 33 H 0.079 0.921 34 H 0.130 0.870 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.227 0.773 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.606 -6.008 25.088 25.804 hybrid contribution 0.003 -0.186 -1.530 1.542 sum -0.602 -6.194 23.557 24.365 Atomic orbital electron populations 1.20284 0.87717 1.02642 1.02725 1.19986 0.97685 0.86509 1.02714 1.26704 0.95864 1.03577 1.14945 1.83251 1.06949 1.01287 1.63564 1.25901 0.93958 0.97836 1.03641 1.19933 0.89210 0.96143 0.84509 0.87590 1.23018 0.88782 0.92969 0.97490 1.88012 1.43743 1.52983 1.44013 1.23068 0.92777 1.02911 0.84615 1.22392 0.87349 0.95170 0.99618 1.47380 1.31358 1.43097 1.15914 1.16066 0.82926 0.80713 0.80277 1.91192 1.33436 1.39656 1.80278 1.45638 1.33816 1.47728 1.12175 1.21521 0.99188 0.94011 0.83991 1.21888 0.97623 1.01313 0.94956 1.19011 0.96967 0.94570 0.90682 1.21155 1.13620 1.24278 0.97152 0.92711 1.25028 0.95476 0.95130 0.98777 1.69952 1.30067 1.26820 1.26404 0.86642 0.81117 0.78197 0.81937 1.20234 1.21244 1.20233 1.65886 1.04134 1.31993 1.16823 0.90945 0.91033 0.91166 0.81398 0.86740 0.92126 0.87002 0.92147 0.89963 0.88804 0.77349 0.92047 0.91846 0.92795 0.92804 0.96305 0.96279 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.31 36.00 0.37 -0.41 16 2 C 0.06 0.90 6.74 -84.23 -0.57 0.33 16 3 C -0.27 -3.53 11.13 29.12 0.32 -3.21 16 4 S 0.19 2.52 19.51 -107.50 -2.10 0.42 16 5 C 0.06 0.88 4.05 -13.46 -0.05 0.82 16 6 C 0.21 2.37 3.56 -68.79 -0.25 2.12 16 7 H 0.11 1.20 8.14 -51.92 -0.42 0.78 16 8 C 0.06 0.49 6.22 37.10 0.23 0.72 16 9 O -0.37 -3.21 10.74 -35.23 -0.38 -3.59 16 10 C 0.04 0.29 6.98 37.31 0.26 0.55 16 11 C 0.08 0.61 6.58 -3.53 -0.02 0.59 16 12 N -0.64 -7.35 3.03 -171.99 -0.52 -7.87 16 13 C 0.70 10.47 8.10 -86.93 -0.70 9.76 16 14 O -0.57 -10.24 10.90 5.29 0.06 -10.18 16 15 N -0.74 -10.56 5.47 -65.23 -0.36 -10.91 16 16 C 0.14 2.39 5.68 -4.05 -0.02 2.37 16 17 C -0.12 -2.31 5.27 -26.74 -0.14 -2.45 16 18 C 0.03 0.64 4.97 -27.88 -0.14 0.50 16 19 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 20 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 22 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 23 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 N -0.47 -7.15 10.53 -8.06 -0.08 -7.23 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 31 H 0.17 1.77 8.06 -52.49 -0.42 1.34 16 32 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.52 7.54 -51.93 -0.39 0.13 16 34 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.62 5.77 -51.93 -0.30 0.32 16 38 H 0.39 4.49 6.03 -40.82 -0.25 4.24 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.05 1.00 8.14 -51.92 -0.42 0.58 16 43 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 375.89 15.07 5.66 5.66 Total: -1.00 -34.47 375.89 -9.94 -44.41 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -6.82 Total: 0.59 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -1.12 Total: -1.61 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: -0.23 Total: -52.05 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.32 Total: -13.77 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 2.52 SS G_CDS: -2.10 Total: 0.42 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.47 -9.94 -44.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190171521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.292 kcal (2) G-P(sol) polarization free energy of solvation -34.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds