Wall clock time and date at job start Tue Mar 31 2020 22:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33643 * 122.74801 * 2 1 4 4 S 1.76204 * 107.92183 * 180.02562 * 3 2 1 5 5 C 1.70983 * 90.28148 * 0.02562 * 4 3 2 6 6 C 1.50696 * 124.91081 * 179.97438 * 5 4 3 7 7 H 1.09009 * 109.70787 * 176.48431 * 6 5 4 8 8 C 1.52882 * 109.62063 * 56.18385 * 6 5 4 9 9 O 1.42962 * 109.29682 * 188.11007 * 8 6 5 10 10 C 1.42960 * 114.16517 * 62.45095 * 9 8 6 11 11 C 1.53294 * 109.22500 * 297.41515 * 10 9 8 12 12 N 1.47154 * 108.38409 * 52.30277 * 11 10 9 13 13 C 1.34771 * 120.98106 * 129.44188 * 12 11 10 14 14 O 1.21587 * 119.99554 * 185.21339 * 13 12 11 15 15 N 1.34771 * 120.00261 * 4.93836 * 13 12 11 16 16 C 1.46499 * 120.00474 * 175.32232 * 15 13 12 17 17 C 1.52989 * 109.47449 * 180.02562 * 16 15 13 18 18 C 1.52998 * 109.47379 * 179.97438 * 17 16 15 19 19 C 1.50701 * 109.47380 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00105 * 0.02562 * 19 18 17 21 21 C 1.37876 * 119.99667 * 180.02562 * 19 18 17 22 22 N 1.31517 * 120.00685 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99516 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47402 * 60.00042 * 23 21 19 25 25 H 1.48507 * 109.46826 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46930 * 299.99532 * 23 21 19 27 27 N 1.29023 * 110.16700 * 0.24419 * 5 4 3 28 28 H 1.09004 * 109.47692 * 89.97289 * 1 2 3 29 29 H 1.09005 * 109.47262 * 209.97672 * 1 2 3 30 30 H 1.08998 * 109.47217 * 329.97235 * 1 2 3 31 31 H 1.07991 * 126.03747 * 0.04326 * 3 2 1 32 32 H 1.09005 * 109.57840 * 68.10127 * 8 6 5 33 33 H 1.08995 * 109.36700 * 307.99586 * 8 6 5 34 34 H 1.09000 * 109.51083 * 177.48877 * 10 9 8 35 35 H 1.09002 * 109.51393 * 57.34494 * 10 9 8 36 36 H 1.08999 * 109.67754 * 292.58292 * 11 10 9 37 37 H 1.08997 * 109.71347 * 172.04438 * 11 10 9 38 38 H 0.97006 * 120.00016 * 355.32735 * 15 13 12 39 39 H 1.09005 * 109.47114 * 300.00141 * 16 15 13 40 40 H 1.09000 * 109.47203 * 59.99665 * 16 15 13 41 41 H 1.08998 * 109.47364 * 300.00266 * 17 16 15 42 42 H 1.09008 * 109.47270 * 60.00020 * 17 16 15 43 43 H 1.09005 * 109.47203 * 300.00111 * 18 17 16 44 44 H 1.09000 * 109.47183 * 59.99677 * 18 17 16 45 45 H 0.96993 * 120.00150 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9333 0.6731 -0.0007 5 6 3.5039 -0.9819 -0.0018 6 6 4.4835 -2.1270 -0.0033 7 1 3.9441 -3.0723 0.0592 8 6 5.4270 -1.9971 1.1926 9 8 6.4666 -2.9722 1.0822 10 6 7.2970 -2.8144 -0.0708 11 6 6.4460 -2.9902 -1.3336 12 7 5.2831 -2.0936 -1.2382 13 6 4.9633 -1.2622 -2.2496 14 8 4.0573 -0.4625 -2.1156 15 7 5.6512 -1.3136 -3.4073 16 6 5.2392 -0.4831 -4.5417 17 6 6.1798 -0.7300 -5.7228 18 6 5.7491 0.1368 -6.9077 19 6 6.6752 -0.1069 -8.0713 20 1 7.4893 -0.8101 -7.9755 21 6 6.4832 0.5679 -9.2582 22 7 5.4915 1.4238 -9.3752 23 14 7.6308 0.2652 -10.7008 24 1 7.5714 -1.1670 -11.0887 25 1 7.2128 1.1067 -11.8508 26 1 9.0201 0.6150 -10.3100 27 7 2.2199 -1.1083 -0.0067 28 1 -0.3634 0.0005 -1.0277 29 1 -0.3634 -0.8902 0.5135 30 1 -0.3633 0.8897 0.5142 31 1 1.8391 2.1307 0.0007 32 1 4.8711 -2.1605 2.1159 33 1 5.8638 -0.9986 1.2015 34 1 8.0867 -3.5656 -0.0563 35 1 7.7407 -1.8188 -0.0664 36 1 6.1076 -4.0237 -1.4072 37 1 7.0362 -2.7336 -2.2133 38 1 6.4191 -1.9005 -3.4896 39 1 4.2199 -0.7408 -4.8294 40 1 5.2814 0.5681 -4.2567 41 1 7.1992 -0.4727 -5.4354 42 1 6.1370 -1.7814 -6.0077 43 1 4.7297 -0.1210 -7.1950 44 1 5.7915 1.1881 -6.6231 45 1 5.3563 1.8982 -10.2103 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190171521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:41 Heat of formation + Delta-G solvation = -33.152317 kcal Electronic energy + Delta-G solvation = -27504.374131 eV Core-core repulsion = 23648.779624 eV Total energy + Delta-G solvation = -3855.594507 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.00651 -40.44668 -39.63857 -37.14164 -35.97869 -35.37889 -34.11342 -32.71938 -31.73186 -29.45281 -28.45556 -28.11572 -26.26083 -25.09457 -23.84115 -23.14765 -22.32285 -21.19096 -20.42638 -19.44229 -18.52882 -18.25640 -17.70297 -17.16785 -17.10878 -16.56335 -16.47590 -16.37985 -16.04510 -15.94768 -15.45851 -15.36635 -14.86492 -14.70221 -14.28424 -14.04657 -13.83323 -13.77436 -13.62666 -13.39712 -13.26260 -13.03003 -12.73000 -12.56521 -12.52753 -12.40683 -12.12348 -12.06490 -11.69843 -11.60033 -11.36273 -11.29902 -11.19046 -10.56737 -10.55545 -10.48707 -9.92418 -9.56801 -8.90215 -8.20201 -6.32040 -0.15737 0.64286 0.96143 1.31886 1.41349 1.44228 1.52104 2.00024 2.02325 2.41004 2.55572 2.79013 3.11528 3.13582 3.57394 3.82226 3.90430 3.98201 4.08937 4.17007 4.20182 4.21658 4.32829 4.42976 4.47716 4.53123 4.56419 4.75903 4.77380 4.85275 4.86999 4.92956 4.93941 5.00751 5.13762 5.20223 5.42480 5.44009 5.51208 5.68886 5.70179 5.82816 5.96208 6.20991 6.81772 6.86227 6.90905 7.37705 7.43308 8.91761 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013098 B = 0.002753 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.169551 B =10168.868271 C =11817.111127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.043 3.957 3 C -0.281 4.281 4 S 0.190 5.810 5 C 0.058 3.942 6 C 0.207 3.793 7 H 0.104 0.896 8 C 0.065 3.935 9 O -0.376 6.376 10 C 0.044 3.956 11 C 0.072 3.928 12 N -0.631 5.631 13 C 0.693 3.307 14 O -0.603 6.603 15 N -0.728 5.728 16 C 0.155 3.845 17 C -0.099 4.099 18 C 0.026 3.974 19 C -0.542 4.542 20 H 0.068 0.932 21 C -0.003 4.003 22 N -0.936 5.936 23 Si 0.967 3.033 24 H -0.265 1.265 25 H -0.287 1.287 26 H -0.264 1.264 27 N -0.500 5.500 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.189 0.811 32 H 0.129 0.871 33 H 0.061 0.939 34 H 0.142 0.858 35 H 0.061 0.939 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.407 0.593 39 H 0.040 0.960 40 H 0.048 0.952 41 H 0.070 0.930 42 H 0.066 0.934 43 H -0.011 1.011 44 H -0.008 1.008 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.412 -8.082 25.682 26.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.090 4.090 3 C -0.421 4.421 4 S 0.448 5.552 5 C -0.219 4.219 6 C 0.099 3.901 7 H 0.122 0.878 8 C -0.014 4.014 9 O -0.294 6.294 10 C -0.033 4.033 11 C -0.050 4.050 12 N -0.371 5.371 13 C 0.394 3.606 14 O -0.483 6.483 15 N -0.385 5.385 16 C 0.030 3.970 17 C -0.137 4.137 18 C -0.012 4.012 19 C -0.580 4.580 20 H 0.086 0.914 21 C -0.201 4.201 22 N -0.576 5.576 23 Si 0.791 3.209 24 H -0.190 1.190 25 H -0.212 1.212 26 H -0.189 1.189 27 N -0.218 5.218 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.113 0.887 31 H 0.206 0.794 32 H 0.147 0.853 33 H 0.079 0.921 34 H 0.160 0.840 35 H 0.080 0.920 36 H 0.113 0.887 37 H 0.126 0.874 38 H 0.246 0.754 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.007 0.993 44 H 0.010 0.990 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.483 -7.518 25.759 26.874 hybrid contribution -0.651 0.254 -1.696 1.834 sum 0.832 -7.264 24.063 25.149 Atomic orbital electron populations 1.20350 0.85872 1.04056 1.02756 1.20518 0.99178 0.86529 1.02784 1.27024 0.95765 1.04498 1.14781 1.83121 1.07369 1.01309 1.63373 1.26306 0.94062 0.98652 1.02882 1.20134 0.89460 0.95160 0.85338 0.87795 1.22973 0.88489 0.93139 0.96758 1.88016 1.43663 1.52904 1.44809 1.23255 0.92743 1.04111 0.83228 1.22718 0.86307 0.94963 1.01018 1.47418 1.32119 1.42577 1.14979 1.16231 0.82554 0.80967 0.80822 1.91176 1.34873 1.41240 1.81012 1.45271 1.34444 1.47605 1.11230 1.21019 0.97691 0.93693 0.84568 1.21578 0.98444 1.00594 0.93112 1.18915 0.95303 0.94168 0.92830 1.21649 1.14093 1.24266 0.97942 0.91410 1.26031 0.97142 0.94784 1.02134 1.70107 1.32133 1.28073 1.27279 0.85473 0.79096 0.78466 0.77843 1.19026 1.21250 1.18876 1.65944 1.04952 1.32912 1.17983 0.91468 0.90706 0.88713 0.79408 0.85285 0.92080 0.84043 0.92035 0.88731 0.87390 0.75426 0.94137 0.93380 0.91156 0.91513 0.99266 0.98980 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.48 10.31 71.24 0.73 -0.75 16 2 C 0.04 1.21 6.74 41.52 0.28 1.49 16 3 C -0.28 -7.34 11.13 66.78 0.74 -6.60 16 4 S 0.19 5.02 19.51 -56.49 -1.10 3.92 16 5 C 0.06 1.59 4.05 88.52 0.36 1.95 16 6 C 0.21 4.49 3.56 44.08 0.16 4.64 16 7 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 8 C 0.07 1.03 6.22 71.94 0.45 1.48 16 9 O -0.38 -5.58 10.74 -148.98 -1.60 -7.18 16 10 C 0.04 0.45 6.98 72.08 0.50 0.95 16 11 C 0.07 0.93 6.58 86.35 0.57 1.49 16 12 N -0.63 -13.72 3.03 -816.33 -2.47 -16.19 16 13 C 0.69 20.33 8.10 179.06 1.45 21.78 16 14 O -0.60 -21.98 10.90 -3.99 -0.04 -22.03 16 15 N -0.73 -20.01 5.47 -478.56 -2.62 -22.62 16 16 C 0.15 5.47 5.68 86.38 0.49 5.96 16 17 C -0.10 -3.76 5.27 30.59 0.16 -3.60 16 18 C 0.03 1.32 4.97 29.85 0.15 1.47 16 19 C -0.54 -29.98 9.11 25.60 0.23 -29.74 16 20 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 21 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 22 N -0.94 -57.17 13.29 21.45 0.28 -56.89 16 23 Si 0.97 43.44 29.54 68.60 2.03 45.47 16 24 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 25 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 26 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 27 N -0.50 -15.36 10.53 -179.40 -1.89 -17.25 16 28 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.09 1.44 8.12 -2.39 -0.02 1.42 16 31 H 0.19 3.87 8.06 -2.92 -0.02 3.85 16 32 H 0.13 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.06 0.97 7.54 -2.39 -0.02 0.95 16 34 H 0.14 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.11 1.07 5.77 -2.39 -0.01 1.06 16 38 H 0.41 8.37 6.03 -92.70 -0.56 7.81 16 39 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 40 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 43 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 44 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 45 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -75.94 375.89 -0.23 -76.17 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.44 Total: 15.79 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 6.74 Total: 0.82 kcal Atomic # 7 Polarization: -106.26 SS G_CDS: -6.69 Total: -112.95 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -1.64 Total: -29.21 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: 5.02 SS G_CDS: -1.10 Total: 3.92 kcal Total: -75.94 -0.23 -76.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190171521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.014 kcal (2) G-P(sol) polarization free energy of solvation -75.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds