Wall clock time and date at job start Tue Mar 31 2020 22:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.28978 * 124.83589 * 2 1 4 4 C 1.31781 * 117.20761 * 179.97438 * 3 2 1 5 5 C 1.50701 * 122.85011 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47107 * 90.02681 * 5 4 3 7 7 C 1.53003 * 109.47404 * 174.99301 * 6 5 4 8 8 C 1.52997 * 109.47295 * 294.99547 * 6 5 4 9 9 C 1.34513 * 114.28960 * 359.97438 * 4 3 2 10 10 N 1.39421 * 126.07794 * 180.02562 * 9 4 3 11 11 C 1.34772 * 120.00036 * 179.97438 * 10 9 4 12 12 O 1.21423 * 120.00144 * 359.97438 * 11 10 9 13 13 C 1.49259 * 120.00258 * 179.97438 * 11 10 9 14 14 O 1.21370 * 119.99742 * 354.16325 * 13 11 10 15 15 N 1.34779 * 120.00291 * 174.16833 * 13 11 10 16 16 C 1.46499 * 119.99875 * 3.61718 * 15 13 11 17 17 C 1.46498 * 119.99772 * 183.62387 * 15 13 11 18 18 C 1.50697 * 109.47298 * 89.99978 * 17 15 13 19 19 H 1.07999 * 120.00003 * 359.97438 * 18 17 15 20 20 C 1.37883 * 119.99888 * 179.97438 * 18 17 15 21 21 N 1.31512 * 119.99832 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 119.99699 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47031 * 90.00483 * 22 20 18 24 24 H 1.48508 * 109.46766 * 210.00106 * 22 20 18 25 25 H 1.48499 * 109.47544 * 329.99972 * 22 20 18 26 26 S 1.70957 * 124.83794 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.46634 * 90.00398 * 1 2 3 28 28 H 1.08995 * 109.46789 * 210.00164 * 1 2 3 29 29 H 1.09000 * 109.47051 * 330.00707 * 1 2 3 30 30 H 1.09004 * 109.46984 * 210.01994 * 5 4 3 31 31 H 1.08996 * 109.47922 * 330.02505 * 5 4 3 32 32 H 1.09006 * 109.47090 * 54.99444 * 6 5 4 33 33 H 1.09001 * 109.46415 * 59.99964 * 7 6 5 34 34 H 1.08997 * 109.47322 * 179.97438 * 7 6 5 35 35 H 1.08999 * 109.47436 * 300.00080 * 7 6 5 36 36 H 1.08997 * 109.47361 * 179.97438 * 8 6 5 37 37 H 1.09001 * 109.47159 * 300.00425 * 8 6 5 38 38 H 1.09006 * 109.46684 * 59.99654 * 8 6 5 39 39 H 0.96998 * 119.99714 * 359.97438 * 10 9 4 40 40 H 1.08998 * 109.46980 * 83.99487 * 16 15 13 41 41 H 1.09001 * 109.47239 * 203.99400 * 16 15 13 42 42 H 1.08998 * 109.47413 * 323.99838 * 16 15 13 43 43 H 1.09007 * 109.46595 * 209.99938 * 17 15 13 44 44 H 1.09001 * 109.47455 * 329.99270 * 17 15 13 45 45 H 0.96997 * 120.00067 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2438 1.0586 0.0000 4 6 3.5499 0.8837 0.0005 5 6 4.5282 2.0300 0.0000 6 6 4.8594 2.4185 1.4424 7 6 5.9450 3.4967 1.4438 8 6 3.6023 2.9597 2.1262 9 6 3.9356 -0.4050 0.0015 10 7 5.2505 -0.8684 0.0028 11 6 5.4980 -2.1932 0.0042 12 8 4.5759 -2.9832 0.0049 13 6 6.9057 -2.6895 0.0050 14 8 7.8257 -1.9051 -0.1026 15 7 7.1553 -4.0085 0.1250 16 6 6.0446 -4.9625 0.1750 17 6 8.5372 -4.4881 0.2056 18 6 8.9705 -4.5315 1.6483 19 1 8.2853 -4.2313 2.4272 20 6 10.2419 -4.9543 1.9738 21 7 10.6203 -4.9917 3.2328 22 14 11.4268 -5.4741 0.6265 23 1 12.2046 -4.2947 0.1693 24 1 12.3558 -6.5051 1.1551 25 1 10.6621 -6.0359 -0.5158 26 16 2.4836 -1.4032 0.0006 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8901 0.5137 30 1 5.4411 1.7284 -0.5136 31 1 4.0872 2.8840 -0.5141 32 1 5.2175 1.5416 1.9818 33 1 5.5868 4.3735 0.9044 34 1 6.1806 3.7737 2.4713 35 1 6.8406 3.1112 0.9566 36 1 3.8381 3.2360 3.1539 37 1 3.2441 3.8365 1.5868 38 1 2.8289 2.1915 2.1252 39 1 5.9871 -0.2374 0.0026 40 1 5.7282 -5.2052 -0.8394 41 1 6.3689 -5.8715 0.6817 42 1 5.2104 -4.5207 0.7199 43 1 8.6001 -5.4884 -0.2229 44 1 9.1889 -3.8135 -0.3495 45 1 11.5148 -5.2888 3.4618 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283154788.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:23 Heat of formation + Delta-G solvation = -44.655427 kcal Electronic energy + Delta-G solvation = -27379.081474 eV Core-core repulsion = 23522.988155 eV Total energy + Delta-G solvation = -3856.093319 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.25923 -41.09873 -39.75729 -37.47819 -37.05718 -36.04765 -34.67940 -32.68296 -30.78147 -29.53896 -28.45681 -27.99611 -27.55914 -25.93748 -23.93949 -23.63054 -21.82073 -21.17356 -20.57571 -19.33545 -19.21423 -18.37895 -17.93676 -17.43616 -17.29463 -16.75333 -16.37189 -16.10444 -15.94602 -15.46135 -15.11165 -15.02630 -14.74539 -14.46594 -14.38929 -14.03974 -13.83867 -13.74194 -13.58664 -13.49058 -13.21592 -13.11061 -13.06422 -12.69674 -12.55196 -12.44700 -12.40581 -12.25075 -12.00885 -11.85778 -11.79205 -11.76904 -11.58973 -10.85735 -10.78354 -10.37804 -10.04057 -9.67687 -9.10290 -8.36351 -6.44189 -0.53748 0.05510 0.32635 0.68744 1.16039 1.36223 1.38629 1.47454 1.68630 2.03797 2.30143 2.39459 2.97386 3.10834 3.16504 3.82726 3.89619 3.96716 4.08331 4.28165 4.33535 4.49770 4.59301 4.61978 4.65928 4.69098 4.74085 4.76196 4.82510 4.83818 4.86802 4.98178 5.01362 5.08210 5.11384 5.23959 5.28203 5.32293 5.37104 5.42873 5.43779 5.56207 6.08245 6.20452 6.39015 6.57510 6.76503 6.79576 7.20203 8.80224 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.014285 B = 0.003101 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.617415 B = 9026.439958 C =10369.754970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.002 4.002 3 N -0.464 5.464 4 C 0.037 3.963 5 C -0.039 4.039 6 C -0.091 4.091 7 C -0.145 4.145 8 C -0.135 4.135 9 C -0.038 4.038 10 N -0.591 5.591 11 C 0.508 3.492 12 O -0.489 6.489 13 C 0.499 3.501 14 O -0.550 6.550 15 N -0.564 5.564 16 C 0.067 3.933 17 C 0.220 3.780 18 C -0.545 4.545 19 H 0.030 0.970 20 C 0.016 3.984 21 N -0.942 5.942 22 Si 0.948 3.052 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.235 1.235 26 S 0.225 5.775 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.042 0.958 39 H 0.433 0.567 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.097 0.903 43 H 0.063 0.937 44 H 0.036 0.964 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.476 11.479 -9.263 24.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.280 4.280 3 N -0.179 5.179 4 C -0.099 4.099 5 C -0.079 4.079 6 C -0.110 4.110 7 C -0.202 4.202 8 C -0.193 4.193 9 C -0.255 4.255 10 N -0.239 5.239 11 C 0.290 3.710 12 O -0.365 6.365 13 C 0.280 3.720 14 O -0.429 6.429 15 N -0.294 5.294 16 C -0.074 4.074 17 C 0.099 3.901 18 C -0.584 4.584 19 H 0.048 0.952 20 C -0.183 4.183 21 N -0.581 5.581 22 Si 0.770 3.230 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.158 1.158 26 S 0.478 5.522 27 H 0.117 0.883 28 H 0.114 0.886 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.274 0.726 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.115 0.885 43 H 0.080 0.920 44 H 0.054 0.946 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.944 10.613 -9.206 24.396 hybrid contribution 1.959 0.657 0.220 2.078 sum -17.985 11.270 -8.986 23.048 Atomic orbital electron populations 1.20541 0.82663 1.05055 1.04954 1.27868 1.03562 0.92519 1.04029 1.66231 1.03134 1.32165 1.16349 1.20270 0.91302 0.92028 1.06302 1.20301 0.95299 0.94483 0.97837 1.21078 0.96746 0.98624 0.94584 1.21821 0.97667 0.98329 1.02383 1.21729 0.96609 1.00944 0.99974 1.23594 0.90063 0.97093 1.14777 1.42336 1.05790 1.07158 1.68577 1.20336 0.90188 0.82763 0.77673 1.90608 1.45420 1.53310 1.47149 1.19708 0.88361 0.83929 0.79977 1.90728 1.46195 1.55274 1.50730 1.47843 1.09780 1.05414 1.66380 1.22441 0.88564 0.92838 1.03554 1.19661 0.78474 0.96075 0.95926 1.21453 0.99435 1.45438 0.92051 0.95206 1.25834 0.99693 0.94638 0.98136 1.70038 1.20410 1.48258 1.19394 0.85712 0.78895 0.78741 0.79636 1.19647 1.20201 1.15801 1.84757 0.92098 1.07089 1.68234 0.88263 0.88595 0.88946 0.90207 0.88805 0.93110 0.91287 0.92283 0.92442 0.92774 0.91825 0.93892 0.72629 0.90218 0.90717 0.88507 0.91957 0.94617 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 10.46 71.24 0.75 -0.11 16 2 C 0.00 -0.04 7.38 88.53 0.65 0.61 16 3 N -0.46 -10.92 9.67 -178.84 -1.73 -12.64 16 4 C 0.04 0.90 5.30 41.71 0.22 1.12 16 5 C -0.04 -0.79 4.87 29.85 0.15 -0.65 16 6 C -0.09 -1.83 2.91 -10.79 -0.03 -1.86 16 7 C -0.14 -2.45 9.19 71.98 0.66 -1.78 16 8 C -0.14 -2.65 8.97 71.98 0.65 -2.00 16 9 C -0.04 -1.02 7.17 82.63 0.59 -0.43 16 10 N -0.59 -16.91 5.38 -307.36 -1.65 -18.56 16 11 C 0.51 16.78 7.73 87.21 0.67 17.45 16 12 O -0.49 -15.66 10.75 -3.47 -0.04 -15.70 16 13 C 0.50 19.95 7.73 87.21 0.67 20.63 16 14 O -0.55 -24.73 16.04 -3.31 -0.05 -24.78 16 15 N -0.56 -23.01 2.86 -852.96 -2.44 -25.45 16 16 C 0.07 2.19 9.55 127.77 1.22 3.41 16 17 C 0.22 10.23 4.23 85.63 0.36 10.59 16 18 C -0.55 -31.06 9.94 25.60 0.25 -30.80 16 19 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 20 C 0.02 0.90 5.47 84.66 0.46 1.37 16 21 N -0.94 -58.02 13.96 21.45 0.30 -57.72 16 22 Si 0.95 42.32 27.47 68.60 1.88 44.20 16 23 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 25 H -0.24 -9.29 6.54 99.48 0.65 -8.64 16 26 S 0.22 5.25 20.41 -56.49 -1.15 4.10 16 27 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 1.50 7.22 -2.38 -0.02 1.48 16 31 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.04 0.97 6.75 -2.38 -0.02 0.95 16 39 H 0.43 11.60 7.10 -92.71 -0.66 10.94 16 40 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.07 2.41 8.03 -2.39 -0.02 2.39 16 42 H 0.10 3.12 5.35 -2.51 -0.01 3.10 16 43 H 0.06 2.63 7.13 -2.38 -0.02 2.61 16 44 H 0.04 1.72 6.80 -2.39 -0.02 1.70 16 45 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -70.56 382.50 2.70 -67.86 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.30 Total: 21.15 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: 7.28 Total: 17.54 kcal Atomic # 7 Polarization: -108.85 SS G_CDS: -5.52 Total: -114.37 kcal Atomic # 8 Polarization: -40.38 SS G_CDS: -0.09 Total: -40.47 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 1.88 Total: 44.20 kcal Atomic # 16 Polarization: 5.25 SS G_CDS: -1.15 Total: 4.10 kcal Total: -70.56 2.70 -67.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283154788.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.203 kcal (2) G-P(sol) polarization free energy of solvation -70.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds