Wall clock time and date at job start Tue Mar 31 2020 23:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.33540 * 125.96975 * 89.99867 * 3 2 1 5 5 N 1.31906 * 114.55927 * 179.97438 * 4 3 2 6 6 C 1.29684 * 116.93385 * 359.97438 * 5 4 3 7 7 N 1.38746 * 124.94524 * 179.97438 * 6 5 4 8 8 C 1.34779 * 119.99935 * 359.97438 * 7 6 5 9 9 O 1.21391 * 120.00192 * 359.97438 * 8 7 6 10 10 C 1.49311 * 120.00153 * 180.02562 * 8 7 6 11 11 O 1.21367 * 119.99388 * 359.97438 * 10 8 7 12 12 N 1.34770 * 120.00286 * 179.97438 * 10 8 7 13 13 C 1.46496 * 120.00117 * 179.97438 * 12 10 8 14 14 C 1.53003 * 109.47384 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47073 * 300.00152 * 14 13 12 16 16 C 1.53003 * 109.46681 * 59.99949 * 14 13 12 17 17 C 1.52996 * 109.47430 * 180.02562 * 14 13 12 18 18 C 1.50695 * 109.47468 * 180.02562 * 17 14 13 19 19 H 1.08001 * 119.99748 * 0.02562 * 18 17 14 20 20 C 1.37869 * 120.00390 * 180.02562 * 18 17 14 21 21 N 1.31520 * 120.00055 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00260 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46846 * 60.00065 * 22 20 18 24 24 H 1.48500 * 109.46972 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46883 * 299.99847 * 22 20 18 26 26 S 1.70967 * 110.11019 * 359.76735 * 6 5 4 27 27 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 32 32 H 1.07990 * 122.71773 * 359.96551 * 4 3 2 33 33 H 0.96995 * 120.00148 * 179.97438 * 7 6 5 34 34 H 0.97002 * 120.00151 * 0.02562 * 12 10 8 35 35 H 1.09001 * 109.47598 * 300.00533 * 13 12 10 36 36 H 1.08998 * 109.46914 * 60.00341 * 13 12 10 37 37 H 1.09006 * 109.46821 * 59.99502 * 15 14 13 38 38 H 1.09000 * 109.46924 * 179.97438 * 15 14 13 39 39 H 1.08998 * 109.47159 * 299.99920 * 15 14 13 40 40 H 1.09001 * 109.46873 * 60.00642 * 16 14 13 41 41 H 1.09004 * 109.46408 * 180.02562 * 16 14 13 42 42 H 1.08996 * 109.47468 * 300.00034 * 16 14 13 43 43 H 1.09009 * 109.47239 * 300.00370 * 17 14 13 44 44 H 1.09006 * 109.47095 * 59.99807 * 17 14 13 45 45 H 0.97001 * 120.00293 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2939 2.1602 1.0808 5 7 2.7254 3.3791 0.8198 6 6 2.8421 3.7060 -0.4297 7 7 3.2785 4.9396 -0.8911 8 6 3.6184 5.9051 -0.0143 9 8 3.5424 5.6957 1.1789 10 6 4.0876 7.2329 -0.5108 11 8 4.1632 7.4424 -1.7038 12 7 4.4270 8.1986 0.3659 13 6 4.8878 9.5011 -0.1213 14 6 5.2064 10.4074 1.0696 15 6 3.9471 10.5965 1.9178 16 6 6.3029 9.7642 1.9209 17 6 5.6870 11.7679 0.5608 18 6 6.0014 12.6604 1.7337 19 1 5.8718 12.2937 2.7412 20 6 6.4545 13.9449 1.5206 21 7 6.6128 14.3913 0.2936 22 14 6.8435 15.0515 2.9745 23 1 7.9086 14.4277 3.8001 24 1 7.3101 16.3719 2.4806 25 1 5.6216 15.2341 3.7983 26 16 2.3853 2.3936 -1.4258 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 2.1625 1.7904 2.0868 33 1 3.3390 5.1071 -1.8445 34 1 4.3669 8.0310 1.3194 35 1 5.7851 9.3665 -0.7253 36 1 4.1067 9.9590 -0.7281 37 1 3.6043 9.6273 2.2802 38 1 4.1743 11.2418 2.7664 39 1 3.1659 11.0546 1.3113 40 1 7.2000 9.6295 1.3166 41 1 6.5296 10.4097 2.7695 42 1 5.9601 8.7951 2.2833 43 1 6.5840 11.6336 -0.0438 44 1 4.9054 12.2259 -0.0455 45 1 6.9312 15.2952 0.1437 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357986592.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:13 Heat of formation + Delta-G solvation = -33.728673 kcal Electronic energy + Delta-G solvation = -26189.511220 eV Core-core repulsion = 22333.891720 eV Total energy + Delta-G solvation = -3855.619500 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.18904 -39.92342 -38.63969 -37.24381 -35.80259 -34.24205 -33.63775 -32.12401 -29.04792 -27.51879 -26.93186 -26.54007 -25.96658 -24.26149 -23.34808 -22.56233 -21.13074 -19.92595 -19.61212 -18.23900 -17.50309 -17.04331 -16.40247 -16.35410 -16.32415 -15.30229 -15.24524 -15.04809 -14.52570 -14.49841 -14.33775 -14.04392 -13.97815 -13.46340 -13.17810 -12.91969 -12.82449 -12.23284 -12.14394 -12.09697 -12.07995 -11.84316 -11.31939 -11.21965 -11.14480 -11.02081 -10.88489 -10.65673 -10.48106 -10.30016 -10.20737 -9.93291 -9.61125 -9.56804 -9.21374 -9.04766 -8.97867 -8.57640 -8.37688 -6.02085 -4.03495 0.25894 0.52299 1.24671 1.34681 2.13389 2.56027 3.13641 3.26209 3.31731 3.36965 3.38820 4.16521 4.34146 4.43958 4.48917 4.54689 4.80028 5.05323 5.20145 5.33352 5.35922 5.38286 5.46678 5.52253 5.55476 5.69116 5.71045 5.84023 6.09283 6.11752 6.15381 6.29508 6.32648 6.40125 6.60630 6.64632 7.00665 7.03702 7.04577 7.12215 7.44180 7.59487 7.61815 7.71097 7.90870 7.96140 8.37683 9.00733 9.59860 11.09216 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.037228 B = 0.001809 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.934392 B =15470.224361 C =15929.012289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.041 4.041 3 C -0.239 4.239 4 C 0.067 3.933 5 N -0.473 5.473 6 C 0.266 3.734 7 N -0.614 5.614 8 C 0.504 3.496 9 O -0.447 6.447 10 C 0.507 3.493 11 O -0.523 6.523 12 N -0.681 5.681 13 C 0.124 3.876 14 C -0.073 4.073 15 C -0.130 4.130 16 C -0.130 4.130 17 C 0.037 3.963 18 C -0.513 4.513 19 H 0.060 0.940 20 C 0.057 3.943 21 N -0.895 5.895 22 Si 0.890 3.110 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 S 0.133 5.867 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.179 0.821 33 H 0.434 0.566 34 H 0.413 0.587 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.031 0.969 38 H 0.069 0.931 39 H 0.049 0.951 40 H 0.049 0.951 41 H 0.069 0.931 42 H 0.031 0.969 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.514 -28.645 -3.210 30.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.081 4.081 3 C -0.361 4.361 4 C -0.084 4.084 5 N -0.194 5.194 6 C -0.103 4.103 7 N -0.267 5.267 8 C 0.282 3.718 9 O -0.313 6.313 10 C 0.285 3.715 11 O -0.401 6.401 12 N -0.334 5.334 13 C 0.002 3.998 14 C -0.074 4.074 15 C -0.188 4.188 16 C -0.188 4.188 17 C 0.000 4.000 18 C -0.551 4.551 19 H 0.078 0.922 20 C -0.144 4.144 21 N -0.534 5.534 22 Si 0.718 3.282 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.203 1.203 26 S 0.385 5.615 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.196 0.804 33 H 0.274 0.726 34 H 0.250 0.750 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.050 0.950 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.050 0.950 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.303 -28.077 -3.950 30.167 hybrid contribution 0.184 0.535 1.530 1.631 sum -10.119 -27.541 -2.420 29.441 Atomic orbital electron populations 1.21821 0.94226 1.02109 1.02600 1.19946 0.96100 0.88533 1.03490 1.25821 1.13547 1.02880 0.93830 1.21581 0.99106 0.87528 1.00179 1.66553 1.19054 1.17906 1.15876 1.23539 1.02170 0.92075 0.92471 1.42677 1.63440 1.08614 1.11966 1.20735 0.78945 0.85537 0.86583 1.90891 1.45954 1.79757 1.14704 1.19608 0.80259 0.84738 0.86894 1.90783 1.53083 1.81065 1.15130 1.46068 1.63101 1.13457 1.10742 1.21905 0.99790 0.80108 0.97982 1.20953 0.95694 0.97434 0.93302 1.21798 0.96700 0.99532 1.00738 1.21797 0.97960 0.98287 1.00723 1.19089 0.96376 0.87980 0.96568 1.21135 1.43901 0.97297 0.92773 0.92240 1.25005 0.95803 0.98152 0.95476 1.69950 1.46565 1.17369 1.19486 0.86694 0.78724 0.79920 0.82869 1.20314 1.21401 1.20311 1.83964 1.63208 1.04528 1.09839 0.92486 0.92158 0.91882 0.89558 0.90643 0.80424 0.72596 0.74976 0.90860 0.90854 0.95038 0.91164 0.93217 0.93215 0.91165 0.95033 0.96231 0.96225 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.89 37.16 0.37 -0.29 16 2 C -0.04 -0.19 6.47 -27.89 -0.18 -0.37 16 3 C -0.24 -1.81 5.84 -35.95 -0.21 -2.02 16 4 C 0.07 0.64 11.24 -19.16 -0.22 0.43 16 5 N -0.47 -6.10 8.64 -15.17 -0.13 -6.24 16 6 C 0.27 2.99 8.01 -87.55 -0.70 2.29 16 7 N -0.61 -6.86 5.39 -13.55 -0.07 -6.94 16 8 C 0.50 6.89 7.85 -11.65 -0.09 6.80 16 9 O -0.45 -7.16 15.10 5.46 0.08 -7.08 16 10 C 0.51 7.35 7.88 -11.65 -0.09 7.26 16 11 O -0.52 -8.39 16.48 5.48 0.09 -8.30 16 12 N -0.68 -10.04 4.95 -60.78 -0.30 -10.34 16 13 C 0.12 2.08 4.56 -4.04 -0.02 2.06 16 14 C -0.07 -1.36 0.54 -154.51 -0.08 -1.45 16 15 C -0.13 -2.29 8.05 37.16 0.30 -1.99 16 16 C -0.13 -2.29 8.05 37.16 0.30 -1.99 16 17 C 0.04 0.89 4.04 -27.89 -0.11 0.78 16 18 C -0.51 -13.43 7.65 -34.45 -0.26 -13.70 16 19 H 0.06 1.50 5.68 -52.49 -0.30 1.20 16 20 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 21 N -0.89 -26.04 13.29 55.43 0.74 -25.31 16 22 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 S 0.13 1.03 23.22 -107.50 -2.50 -1.46 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.18 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.43 3.80 8.29 -40.82 -0.34 3.46 16 34 H 0.41 5.80 5.63 -40.82 -0.23 5.57 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.03 0.47 6.86 -51.93 -0.36 0.11 16 38 H 0.07 1.33 6.62 -51.93 -0.34 0.98 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.07 1.33 6.62 -51.93 -0.34 0.98 16 42 H 0.03 0.47 6.86 -51.93 -0.36 0.11 16 43 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 44 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 385.93 15.07 5.82 5.82 Total: -1.00 -32.01 385.93 -8.87 -40.88 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -6.47 Total: 3.62 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -1.10 Total: -0.71 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: 0.23 Total: -48.82 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: 0.17 Total: -15.39 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.50 Total: -1.46 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.01 -8.87 -40.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357986592.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.147 kcal (2) G-P(sol) polarization free energy of solvation -32.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds