Wall clock time and date at job start Tue Mar 31 2020 23:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.33540 * 125.96975 * 89.99867 * 3 2 1 5 5 N 1.31906 * 114.55927 * 179.97438 * 4 3 2 6 6 C 1.29684 * 116.93385 * 359.97438 * 5 4 3 7 7 N 1.38746 * 124.94524 * 179.97438 * 6 5 4 8 8 C 1.34779 * 119.99935 * 359.97438 * 7 6 5 9 9 O 1.21391 * 120.00192 * 359.97438 * 8 7 6 10 10 C 1.49311 * 120.00153 * 180.02562 * 8 7 6 11 11 O 1.21367 * 119.99388 * 359.97438 * 10 8 7 12 12 N 1.34770 * 120.00286 * 179.97438 * 10 8 7 13 13 C 1.46496 * 120.00117 * 179.97438 * 12 10 8 14 14 C 1.53003 * 109.47384 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.47073 * 300.00152 * 14 13 12 16 16 C 1.53003 * 109.46681 * 59.99949 * 14 13 12 17 17 C 1.52996 * 109.47430 * 180.02562 * 14 13 12 18 18 C 1.50695 * 109.47468 * 180.02562 * 17 14 13 19 19 H 1.08001 * 119.99748 * 0.02562 * 18 17 14 20 20 C 1.37869 * 120.00390 * 180.02562 * 18 17 14 21 21 N 1.31520 * 120.00055 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00260 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46846 * 60.00065 * 22 20 18 24 24 H 1.48500 * 109.46972 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46883 * 299.99847 * 22 20 18 26 26 S 1.70967 * 110.11019 * 359.76735 * 6 5 4 27 27 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 32 32 H 1.07990 * 122.71773 * 359.96551 * 4 3 2 33 33 H 0.96995 * 120.00148 * 179.97438 * 7 6 5 34 34 H 0.97002 * 120.00151 * 0.02562 * 12 10 8 35 35 H 1.09001 * 109.47598 * 300.00533 * 13 12 10 36 36 H 1.08998 * 109.46914 * 60.00341 * 13 12 10 37 37 H 1.09006 * 109.46821 * 59.99502 * 15 14 13 38 38 H 1.09000 * 109.46924 * 179.97438 * 15 14 13 39 39 H 1.08998 * 109.47159 * 299.99920 * 15 14 13 40 40 H 1.09001 * 109.46873 * 60.00642 * 16 14 13 41 41 H 1.09004 * 109.46408 * 180.02562 * 16 14 13 42 42 H 1.08996 * 109.47468 * 300.00034 * 16 14 13 43 43 H 1.09009 * 109.47239 * 300.00370 * 17 14 13 44 44 H 1.09006 * 109.47095 * 59.99807 * 17 14 13 45 45 H 0.97001 * 120.00293 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2939 2.1602 1.0808 5 7 2.7254 3.3791 0.8198 6 6 2.8421 3.7060 -0.4297 7 7 3.2785 4.9396 -0.8911 8 6 3.6184 5.9051 -0.0143 9 8 3.5424 5.6957 1.1789 10 6 4.0876 7.2329 -0.5108 11 8 4.1632 7.4424 -1.7038 12 7 4.4270 8.1986 0.3659 13 6 4.8878 9.5011 -0.1213 14 6 5.2064 10.4074 1.0696 15 6 3.9471 10.5965 1.9178 16 6 6.3029 9.7642 1.9209 17 6 5.6870 11.7679 0.5608 18 6 6.0014 12.6604 1.7337 19 1 5.8718 12.2937 2.7412 20 6 6.4545 13.9449 1.5206 21 7 6.6128 14.3913 0.2936 22 14 6.8435 15.0515 2.9745 23 1 7.9086 14.4277 3.8001 24 1 7.3101 16.3719 2.4806 25 1 5.6216 15.2341 3.7983 26 16 2.3853 2.3936 -1.4258 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 2.1625 1.7904 2.0868 33 1 3.3390 5.1071 -1.8445 34 1 4.3669 8.0310 1.3194 35 1 5.7851 9.3665 -0.7253 36 1 4.1067 9.9590 -0.7281 37 1 3.6043 9.6273 2.2802 38 1 4.1743 11.2418 2.7664 39 1 3.1659 11.0546 1.3113 40 1 7.2000 9.6295 1.3166 41 1 6.5296 10.4097 2.7695 42 1 5.9601 8.7951 2.2833 43 1 6.5840 11.6336 -0.0438 44 1 4.9054 12.2259 -0.0455 45 1 6.9312 15.2952 0.1437 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357986592.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:12 Heat of formation + Delta-G solvation = -54.132492 kcal Electronic energy + Delta-G solvation = -26190.395996 eV Core-core repulsion = 22333.891720 eV Total energy + Delta-G solvation = -3856.504276 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.21194 -40.87167 -39.72793 -38.69270 -36.70136 -35.31380 -34.68855 -33.94656 -29.78533 -29.18473 -28.31682 -27.99345 -26.98760 -25.42449 -24.49676 -23.60791 -22.12147 -20.92207 -20.59788 -19.54989 -18.49295 -18.35293 -17.95383 -17.41721 -17.40323 -16.57415 -16.31978 -16.27155 -15.76136 -15.45158 -15.34904 -14.91828 -14.79430 -14.77119 -14.52697 -14.38944 -13.94415 -13.78800 -13.42435 -13.04918 -12.86141 -12.74694 -12.66393 -12.62425 -12.45740 -12.33341 -12.23993 -12.02655 -11.97378 -11.73096 -11.56489 -11.29389 -10.98604 -10.88364 -10.49034 -10.40697 -10.33685 -10.26960 -9.30538 -8.13009 -6.20010 -0.53080 -0.19575 0.31779 0.58382 1.14808 1.43681 1.44894 1.52140 1.74702 2.08727 2.28167 2.45609 3.11755 3.21609 3.60020 3.88480 3.89660 4.04281 4.14798 4.18760 4.44518 4.56814 4.64037 4.65009 4.68148 4.69762 4.82826 4.93035 4.97007 5.08442 5.09121 5.10775 5.19951 5.21539 5.39833 5.41004 5.49651 5.51036 5.53750 5.56533 5.78758 5.90450 6.02762 6.32473 6.39650 6.72916 6.85252 6.94213 7.47335 8.98835 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.037228 B = 0.001809 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.934392 B =15470.224361 C =15929.012289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.042 4.042 3 C -0.222 4.222 4 C 0.040 3.960 5 N -0.509 5.509 6 C 0.225 3.775 7 N -0.603 5.603 8 C 0.511 3.489 9 O -0.475 6.475 10 C 0.513 3.487 11 O -0.539 6.539 12 N -0.676 5.676 13 C 0.137 3.863 14 C -0.066 4.066 15 C -0.126 4.126 16 C -0.125 4.125 17 C 0.042 3.958 18 C -0.516 4.516 19 H 0.069 0.931 20 C -0.002 4.002 21 N -0.935 5.935 22 Si 0.955 3.045 23 H -0.269 1.269 24 H -0.290 1.290 25 H -0.269 1.269 26 S 0.193 5.807 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.192 0.808 33 H 0.444 0.556 34 H 0.418 0.582 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.056 0.944 39 H 0.043 0.957 40 H 0.043 0.957 41 H 0.056 0.944 42 H 0.061 0.939 43 H -0.007 1.007 44 H -0.007 1.007 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.395 -31.330 -2.532 33.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.082 4.082 3 C -0.345 4.345 4 C -0.110 4.110 5 N -0.231 5.231 6 C -0.141 4.141 7 N -0.257 5.257 8 C 0.289 3.711 9 O -0.343 6.343 10 C 0.292 3.708 11 O -0.417 6.417 12 N -0.329 5.329 13 C 0.014 3.986 14 C -0.067 4.067 15 C -0.183 4.183 16 C -0.183 4.183 17 C 0.005 3.995 18 C -0.554 4.554 19 H 0.087 0.913 20 C -0.199 4.199 21 N -0.576 5.576 22 Si 0.781 3.219 23 H -0.194 1.194 24 H -0.216 1.216 25 H -0.194 1.194 26 S 0.445 5.555 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.120 0.880 31 H 0.108 0.892 32 H 0.209 0.791 33 H 0.285 0.715 34 H 0.257 0.743 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.011 0.989 44 H 0.011 0.989 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.199 -30.802 -3.283 32.939 hybrid contribution 0.388 1.184 1.233 1.753 sum -10.811 -29.618 -2.050 31.596 Atomic orbital electron populations 1.21818 0.93759 1.03041 1.02046 1.20131 0.96338 0.86729 1.04979 1.26338 1.10879 1.03822 0.93420 1.21820 1.00512 0.87116 1.01529 1.66497 1.19541 1.19691 1.17381 1.23718 1.04212 0.92813 0.93356 1.42499 1.62704 1.08470 1.12053 1.20380 0.78880 0.85381 0.86416 1.90878 1.47637 1.80173 1.15637 1.19750 0.79561 0.85022 0.86475 1.90777 1.53645 1.81442 1.15816 1.45868 1.63208 1.12747 1.11085 1.21555 0.99409 0.80790 0.96871 1.20749 0.96646 0.95055 0.94232 1.21732 0.95836 1.00891 0.99820 1.21731 0.97372 0.99371 0.99801 1.18949 0.94412 0.90764 0.95417 1.21557 1.42539 0.97537 0.93797 0.91254 1.25879 0.96059 0.99986 0.97983 1.70096 1.48124 1.17703 1.21678 0.85643 0.78854 0.77750 0.79640 1.19383 1.21620 1.19377 1.83749 1.61346 1.02081 1.08361 0.92988 0.92799 0.90262 0.87991 0.89238 0.79083 0.71474 0.74310 0.91496 0.91495 0.92026 0.92482 0.93744 0.93738 0.92483 0.92021 0.98907 0.98901 0.93173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.89 71.98 0.71 -0.19 16 2 C -0.04 -0.27 6.47 29.85 0.19 -0.07 16 3 C -0.22 -2.87 5.84 24.62 0.14 -2.73 16 4 C 0.04 0.73 11.24 83.62 0.94 1.67 16 5 N -0.51 -12.85 8.64 -201.92 -1.74 -14.59 16 6 C 0.23 4.88 8.01 179.28 1.44 6.31 16 7 N -0.60 -13.10 5.39 -315.11 -1.70 -14.80 16 8 C 0.51 13.75 7.85 87.23 0.68 14.43 16 9 O -0.47 -15.05 15.10 -3.37 -0.05 -15.10 16 10 C 0.51 14.58 7.88 87.23 0.69 15.27 16 11 O -0.54 -17.04 16.48 -3.30 -0.05 -17.10 16 12 N -0.68 -19.36 4.95 -464.56 -2.30 -21.66 16 13 C 0.14 4.58 4.56 86.38 0.39 4.97 16 14 C -0.07 -2.47 0.54 -52.18 -0.03 -2.50 16 15 C -0.13 -4.30 8.05 71.98 0.58 -3.73 16 16 C -0.13 -4.30 8.05 71.98 0.58 -3.72 16 17 C 0.04 2.08 4.04 29.85 0.12 2.20 16 18 C -0.52 -27.38 7.65 25.60 0.20 -27.18 16 19 H 0.07 3.48 5.68 -2.91 -0.02 3.46 16 20 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 21 N -0.93 -55.91 13.29 21.45 0.28 -55.63 16 22 Si 0.96 43.50 29.54 68.60 2.03 45.53 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 24 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 S 0.19 2.58 23.22 -56.49 -1.31 1.27 16 27 H 0.05 0.37 8.14 -2.39 -0.02 0.36 16 28 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.08 0.26 8.14 -2.38 -0.02 0.24 16 30 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.19 2.60 8.06 -2.92 -0.02 2.58 16 33 H 0.44 7.40 8.29 -92.71 -0.77 6.63 16 34 H 0.42 11.12 5.63 -92.71 -0.52 10.59 16 35 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.07 2.33 8.14 -2.39 -0.02 2.32 16 37 H 0.06 1.73 6.86 -2.38 -0.02 1.72 16 38 H 0.06 2.10 6.62 -2.39 -0.02 2.09 16 39 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.06 2.10 6.62 -2.39 -0.02 2.09 16 42 H 0.06 1.73 6.86 -2.39 -0.02 1.72 16 43 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 44 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 45 H 0.26 14.82 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -70.14 385.93 1.99 -68.15 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -0.26 Total: 18.85 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: 7.10 Total: 5.08 kcal Atomic # 7 Polarization: -101.22 SS G_CDS: -5.46 Total: -106.68 kcal Atomic # 8 Polarization: -32.09 SS G_CDS: -0.11 Total: -32.19 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -1.31 Total: 1.27 kcal Total: -70.14 1.99 -68.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357986592.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.013 kcal (2) G-P(sol) polarization free energy of solvation -70.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds