Wall clock time and date at job start Tue Mar 31 2020 22:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.28972 * 124.82956 * 2 1 4 4 C 1.31788 * 117.20730 * 179.97438 * 3 2 1 5 5 C 1.50698 * 122.86013 * 180.02562 * 4 3 2 6 6 C 1.34515 * 114.28244 * 359.97438 * 4 3 2 7 7 N 1.39425 * 126.07489 * 179.97438 * 6 4 3 8 8 C 1.34777 * 120.00183 * 179.72511 * 7 6 4 9 9 O 1.21425 * 119.99504 * 0.02562 * 8 7 6 10 10 C 1.49256 * 120.00440 * 180.02562 * 8 7 6 11 11 O 1.21375 * 119.99809 * 359.97438 * 10 8 7 12 12 N 1.34777 * 120.00441 * 180.02562 * 10 8 7 13 13 C 1.46496 * 120.00346 * 179.97438 * 12 10 8 14 14 C 1.53002 * 109.47047 * 179.97438 * 13 12 10 15 15 C 1.52991 * 109.47234 * 300.00013 * 14 13 12 16 16 C 1.53000 * 109.47023 * 60.00533 * 14 13 12 17 17 C 1.53006 * 109.46730 * 180.02562 * 14 13 12 18 18 C 1.50700 * 109.46640 * 180.02562 * 17 14 13 19 19 H 1.08002 * 120.00332 * 0.02562 * 18 17 14 20 20 C 1.37878 * 119.99699 * 180.02562 * 18 17 14 21 21 N 1.31510 * 120.00111 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00179 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.46867 * 90.00012 * 22 20 18 24 24 H 1.48499 * 109.47206 * 210.00316 * 22 20 18 25 25 H 1.48503 * 109.46903 * 330.00345 * 22 20 18 26 26 S 1.70953 * 124.83895 * 180.24971 * 2 1 3 27 27 H 1.09002 * 109.46933 * 89.99759 * 1 2 3 28 28 H 1.08998 * 109.46954 * 209.99840 * 1 2 3 29 29 H 1.09003 * 109.47161 * 329.99556 * 1 2 3 30 30 H 1.08999 * 109.46575 * 269.97487 * 5 4 3 31 31 H 1.08995 * 109.47054 * 29.97313 * 5 4 3 32 32 H 1.09001 * 109.47367 * 149.97410 * 5 4 3 33 33 H 0.96996 * 120.00270 * 0.02562 * 7 6 4 34 34 H 0.97004 * 119.99651 * 0.02562 * 12 10 8 35 35 H 1.08995 * 109.47072 * 300.00244 * 13 12 10 36 36 H 1.09001 * 109.46807 * 60.00126 * 13 12 10 37 37 H 1.09002 * 109.47275 * 60.00618 * 15 14 13 38 38 H 1.09000 * 109.47534 * 180.02562 * 15 14 13 39 39 H 1.09001 * 109.47590 * 300.00131 * 15 14 13 40 40 H 1.08995 * 109.47158 * 59.99382 * 16 14 13 41 41 H 1.09001 * 109.47158 * 179.97438 * 16 14 13 42 42 H 1.09002 * 109.46915 * 299.99676 * 16 14 13 43 43 H 1.09004 * 109.46889 * 300.00083 * 17 14 13 44 44 H 1.08993 * 109.47314 * 60.00165 * 17 14 13 45 45 H 0.97005 * 120.00288 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2436 1.0587 0.0000 4 6 3.5499 0.8839 0.0005 5 6 4.5282 2.0301 0.0012 6 6 3.9355 -0.4048 0.0015 7 7 5.2505 -0.8683 0.0018 8 6 5.4981 -2.1931 0.0084 9 8 4.5759 -2.9830 0.0138 10 6 6.9058 -2.6893 0.0093 11 8 7.8276 -1.8997 0.0034 12 7 7.1534 -4.0141 0.0154 13 6 8.5351 -4.5011 0.0156 14 6 8.5365 -6.0311 0.0238 15 6 7.8179 -6.5351 1.2769 16 6 7.8137 -6.5484 -1.2215 17 6 9.9796 -6.5396 0.0247 18 6 9.9810 -8.0466 0.0321 19 1 9.0462 -8.5875 0.0354 20 6 11.1757 -8.7348 0.0347 21 7 11.1771 -10.0499 0.0417 22 14 12.7926 -7.7993 0.0283 23 1 13.2222 -7.5440 1.4266 24 1 13.8277 -8.6045 -0.6684 25 1 12.6131 -6.5056 -0.6784 26 16 2.4836 -1.4031 -0.0061 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 4.7648 2.3063 -1.0264 31 1 4.0868 2.8842 0.5145 32 1 5.4407 1.7287 0.5157 33 1 5.9871 -0.2373 0.0015 34 1 6.4167 -4.6451 0.0189 35 1 9.0471 -4.1416 -0.8769 36 1 9.0499 -4.1329 0.9030 37 1 6.7899 -6.1728 1.2767 38 1 7.8193 -7.6250 1.2830 39 1 8.3329 -6.1665 2.1641 40 1 8.3257 -6.1893 -2.1142 41 1 7.8151 -7.6384 -1.2159 42 1 6.7857 -6.1861 -1.2217 43 1 10.4919 -6.1805 -0.8679 44 1 10.4942 -6.1711 0.9120 45 1 12.0176 -10.5341 0.0432 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357989931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:11 Heat of formation + Delta-G solvation = -39.924164 kcal Electronic energy + Delta-G solvation = -26554.998757 eV Core-core repulsion = 22699.110601 eV Total energy + Delta-G solvation = -3855.888156 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.28734 -40.16221 -39.04522 -37.44048 -35.87041 -33.87102 -32.64555 -32.17788 -29.58686 -28.33941 -27.78326 -26.71783 -26.64153 -24.36044 -23.07428 -22.38453 -21.02831 -20.39101 -19.33597 -18.05743 -17.65327 -17.10414 -16.81822 -16.52272 -16.46230 -15.55136 -15.51414 -14.70562 -14.49768 -14.26660 -14.01470 -13.79674 -13.64454 -13.63034 -13.58427 -13.03486 -12.83736 -12.57105 -12.55854 -12.45258 -12.34361 -12.10332 -11.58195 -11.54748 -11.34270 -11.21355 -11.06304 -10.69414 -10.61082 -10.21275 -10.07394 -9.81929 -9.76668 -9.57790 -9.32525 -9.21374 -9.07277 -8.58650 -8.39455 -6.08845 -4.06777 0.21736 0.76169 1.15054 1.42170 1.97703 2.41844 2.90910 3.27178 3.31579 3.35766 3.38125 3.80588 4.17252 4.40618 4.56683 4.66976 5.01086 5.08335 5.10919 5.17115 5.22138 5.23951 5.37204 5.39668 5.50920 5.51557 5.59969 5.90665 5.92838 5.97277 6.00445 6.13852 6.21219 6.34157 6.50975 6.51501 6.78087 6.94449 6.96216 7.00461 7.10491 7.27003 7.29108 7.46514 7.71492 7.74042 8.47269 8.94974 9.53144 11.03721 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028134 B = 0.002099 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.006362 B =13333.732975 C =14121.751072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.011 4.011 3 N -0.453 5.453 4 C 0.025 3.975 5 C -0.077 4.077 6 C -0.017 4.017 7 N -0.599 5.599 8 C 0.499 3.501 9 O -0.488 6.488 10 C 0.510 3.490 11 O -0.520 6.520 12 N -0.680 5.680 13 C 0.121 3.879 14 C -0.063 4.063 15 C -0.132 4.132 16 C -0.132 4.132 17 C -0.001 4.001 18 C -0.513 4.513 19 H 0.079 0.921 20 C 0.067 3.933 21 N -0.902 5.902 22 Si 0.875 3.125 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.266 1.266 26 S 0.241 5.759 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.431 0.569 34 H 0.414 0.586 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.033 0.967 38 H 0.076 0.924 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.076 0.924 42 H 0.033 0.967 43 H 0.019 0.981 44 H 0.015 0.985 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.419 21.160 -0.135 28.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.288 4.288 3 N -0.168 5.168 4 C -0.111 4.111 5 C -0.136 4.136 6 C -0.235 4.235 7 N -0.247 5.247 8 C 0.280 3.720 9 O -0.361 6.361 10 C 0.289 3.711 11 O -0.397 6.397 12 N -0.333 5.333 13 C -0.001 4.001 14 C -0.064 4.064 15 C -0.190 4.190 16 C -0.189 4.189 17 C -0.039 4.039 18 C -0.551 4.551 19 H 0.097 0.903 20 C -0.135 4.135 21 N -0.541 5.541 22 Si 0.703 3.297 23 H -0.204 1.204 24 H -0.215 1.215 25 H -0.190 1.190 26 S 0.494 5.506 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.271 0.729 34 H 0.252 0.748 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.052 0.948 38 H 0.095 0.905 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.095 0.905 42 H 0.052 0.948 43 H 0.037 0.963 44 H 0.033 0.967 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.702 20.352 -0.146 27.641 hybrid contribution 1.694 1.128 0.019 2.035 sum -17.008 21.480 -0.127 27.399 Atomic orbital electron populations 1.20363 0.85179 1.04014 1.03704 1.27232 1.02256 0.93369 1.05957 1.66136 1.03240 1.31981 1.15461 1.20095 0.91014 0.92227 1.07791 1.20294 0.95418 0.94909 1.03017 1.23456 0.90293 0.96502 1.13231 1.42425 1.05239 1.07821 1.69207 1.20777 0.91283 0.82331 0.77564 1.90742 1.45258 1.54048 1.46087 1.19380 0.87648 0.84353 0.79757 1.90800 1.44863 1.55099 1.48947 1.46025 1.11577 1.05502 1.70147 1.21932 0.79583 0.95962 1.02601 1.20731 0.99696 0.89828 0.96125 1.21815 0.97252 1.03289 0.96605 1.21811 0.97222 1.03250 0.96655 1.19595 0.89914 0.97752 0.96627 1.21054 0.94446 0.88873 1.50679 0.90318 1.25006 0.99047 0.94703 0.94704 1.69896 1.26847 1.06267 1.51061 0.86854 0.83944 0.80414 0.78507 1.20365 1.21474 1.19022 1.84876 0.92003 1.06070 1.67685 0.89803 0.90189 0.89530 0.90546 0.90079 0.91237 0.72871 0.74799 0.90815 0.90825 0.94833 0.90549 0.93246 0.93239 0.90546 0.94829 0.96255 0.96696 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.46 36.01 0.38 -0.05 16 2 C -0.01 -0.10 7.38 -13.48 -0.10 -0.20 16 3 N -0.45 -5.01 10.53 -7.88 -0.08 -5.10 16 4 C 0.03 0.26 6.77 -83.93 -0.57 -0.31 16 5 C -0.08 -0.57 10.07 36.00 0.36 -0.21 16 6 C -0.02 -0.18 7.17 -15.41 -0.11 -0.30 16 7 N -0.60 -6.16 5.38 -11.10 -0.06 -6.22 16 8 C 0.50 5.97 7.85 -11.68 -0.09 5.88 16 9 O -0.49 -6.39 14.10 5.43 0.08 -6.31 16 10 C 0.51 6.69 7.88 -11.68 -0.09 6.60 16 11 O -0.52 -7.72 16.47 5.47 0.09 -7.63 16 12 N -0.68 -9.00 4.95 -60.80 -0.30 -9.30 16 13 C 0.12 1.83 4.56 -4.04 -0.02 1.81 16 14 C -0.06 -1.09 0.54 -154.51 -0.08 -1.18 16 15 C -0.13 -2.20 8.05 37.15 0.30 -1.90 16 16 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 17 C 0.00 -0.02 3.11 -27.88 -0.09 -0.11 16 18 C -0.51 -13.31 8.20 -34.44 -0.28 -13.59 16 19 H 0.08 2.17 5.92 -52.49 -0.31 1.86 16 20 C 0.07 1.84 5.47 -17.82 -0.10 1.75 16 21 N -0.90 -26.68 13.96 55.43 0.77 -25.91 16 22 Si 0.88 20.93 27.47 -169.99 -4.67 16.26 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 26 S 0.24 2.45 20.41 -107.50 -2.19 0.26 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.41 7.22 -51.93 -0.37 0.04 16 33 H 0.43 3.68 7.09 -40.82 -0.29 3.39 16 34 H 0.41 5.15 5.63 -40.82 -0.23 4.92 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.03 0.47 6.86 -51.93 -0.36 0.11 16 38 H 0.08 1.44 6.62 -51.93 -0.34 1.10 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.08 1.44 6.62 -51.93 -0.34 1.10 16 42 H 0.03 0.47 6.86 -51.93 -0.36 0.11 16 43 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 44 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 45 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 LS Contribution 378.74 15.07 5.71 5.71 Total: -1.00 -31.22 378.74 -7.19 -38.42 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -6.34 Total: 3.53 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -0.19 Total: -3.70 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: 0.33 Total: -46.53 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: 0.17 Total: -13.94 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -2.19 Total: 0.26 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.22 -7.19 -38.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357989931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.505 kcal (2) G-P(sol) polarization free energy of solvation -31.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds