Wall clock time and date at job start Tue Mar 31 2020 22:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.28972 * 124.82956 * 2 1 4 4 C 1.31788 * 117.20730 * 179.97438 * 3 2 1 5 5 C 1.50698 * 122.86013 * 180.02562 * 4 3 2 6 6 C 1.34515 * 114.28244 * 359.97438 * 4 3 2 7 7 N 1.39425 * 126.07489 * 179.97438 * 6 4 3 8 8 C 1.34777 * 120.00183 * 179.72511 * 7 6 4 9 9 O 1.21425 * 119.99504 * 0.02562 * 8 7 6 10 10 C 1.49256 * 120.00440 * 180.02562 * 8 7 6 11 11 O 1.21375 * 119.99809 * 359.97438 * 10 8 7 12 12 N 1.34777 * 120.00441 * 180.02562 * 10 8 7 13 13 C 1.46496 * 120.00346 * 179.97438 * 12 10 8 14 14 C 1.53002 * 109.47047 * 179.97438 * 13 12 10 15 15 C 1.52991 * 109.47234 * 300.00013 * 14 13 12 16 16 C 1.53000 * 109.47023 * 60.00533 * 14 13 12 17 17 C 1.53006 * 109.46730 * 180.02562 * 14 13 12 18 18 C 1.50700 * 109.46640 * 180.02562 * 17 14 13 19 19 H 1.08002 * 120.00332 * 0.02562 * 18 17 14 20 20 C 1.37878 * 119.99699 * 180.02562 * 18 17 14 21 21 N 1.31510 * 120.00111 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 120.00179 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.46867 * 90.00012 * 22 20 18 24 24 H 1.48499 * 109.47206 * 210.00316 * 22 20 18 25 25 H 1.48503 * 109.46903 * 330.00345 * 22 20 18 26 26 S 1.70953 * 124.83895 * 180.24971 * 2 1 3 27 27 H 1.09002 * 109.46933 * 89.99759 * 1 2 3 28 28 H 1.08998 * 109.46954 * 209.99840 * 1 2 3 29 29 H 1.09003 * 109.47161 * 329.99556 * 1 2 3 30 30 H 1.08999 * 109.46575 * 269.97487 * 5 4 3 31 31 H 1.08995 * 109.47054 * 29.97313 * 5 4 3 32 32 H 1.09001 * 109.47367 * 149.97410 * 5 4 3 33 33 H 0.96996 * 120.00270 * 0.02562 * 7 6 4 34 34 H 0.97004 * 119.99651 * 0.02562 * 12 10 8 35 35 H 1.08995 * 109.47072 * 300.00244 * 13 12 10 36 36 H 1.09001 * 109.46807 * 60.00126 * 13 12 10 37 37 H 1.09002 * 109.47275 * 60.00618 * 15 14 13 38 38 H 1.09000 * 109.47534 * 180.02562 * 15 14 13 39 39 H 1.09001 * 109.47590 * 300.00131 * 15 14 13 40 40 H 1.08995 * 109.47158 * 59.99382 * 16 14 13 41 41 H 1.09001 * 109.47158 * 179.97438 * 16 14 13 42 42 H 1.09002 * 109.46915 * 299.99676 * 16 14 13 43 43 H 1.09004 * 109.46889 * 300.00083 * 17 14 13 44 44 H 1.08993 * 109.47314 * 60.00165 * 17 14 13 45 45 H 0.97005 * 120.00288 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2436 1.0587 0.0000 4 6 3.5499 0.8839 0.0005 5 6 4.5282 2.0301 0.0012 6 6 3.9355 -0.4048 0.0015 7 7 5.2505 -0.8683 0.0018 8 6 5.4981 -2.1931 0.0084 9 8 4.5759 -2.9830 0.0138 10 6 6.9058 -2.6893 0.0093 11 8 7.8276 -1.8997 0.0034 12 7 7.1534 -4.0141 0.0154 13 6 8.5351 -4.5011 0.0156 14 6 8.5365 -6.0311 0.0238 15 6 7.8179 -6.5351 1.2769 16 6 7.8137 -6.5484 -1.2215 17 6 9.9796 -6.5396 0.0247 18 6 9.9810 -8.0466 0.0321 19 1 9.0462 -8.5875 0.0354 20 6 11.1757 -8.7348 0.0347 21 7 11.1771 -10.0499 0.0417 22 14 12.7926 -7.7993 0.0283 23 1 13.2222 -7.5440 1.4266 24 1 13.8277 -8.6045 -0.6684 25 1 12.6131 -6.5056 -0.6784 26 16 2.4836 -1.4031 -0.0061 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 4.7648 2.3063 -1.0264 31 1 4.0868 2.8842 0.5145 32 1 5.4407 1.7287 0.5157 33 1 5.9871 -0.2373 0.0015 34 1 6.4167 -4.6451 0.0189 35 1 9.0471 -4.1416 -0.8769 36 1 9.0499 -4.1329 0.9030 37 1 6.7899 -6.1728 1.2767 38 1 7.8193 -7.6250 1.2830 39 1 8.3329 -6.1665 2.1641 40 1 8.3257 -6.1893 -2.1142 41 1 7.8151 -7.6384 -1.2159 42 1 6.7857 -6.1861 -1.2217 43 1 10.4919 -6.1805 -0.8679 44 1 10.4942 -6.1711 0.9120 45 1 12.0176 -10.5341 0.0432 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357989931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:10 Heat of formation + Delta-G solvation = -61.552620 kcal Electronic energy + Delta-G solvation = -26555.936638 eV Core-core repulsion = 22699.110601 eV Total energy + Delta-G solvation = -3856.826037 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.22473 -40.98318 -40.07610 -38.76360 -36.74799 -35.26251 -34.03028 -33.30143 -30.14227 -29.88807 -28.95501 -28.01639 -27.80141 -25.54243 -24.02813 -23.69979 -21.99808 -21.29307 -20.37805 -19.30297 -18.88316 -18.57128 -17.87075 -17.45988 -17.39029 -16.61407 -16.40139 -16.11380 -15.74828 -15.49736 -15.15601 -14.99733 -14.96669 -14.28169 -14.22924 -14.20610 -14.19938 -13.89478 -13.58563 -13.13561 -13.11019 -13.02700 -12.94491 -12.81705 -12.65141 -12.33450 -12.30394 -12.29526 -12.18563 -11.77393 -11.54352 -11.35323 -11.02679 -10.91712 -10.69342 -10.53008 -10.34487 -10.09339 -9.14702 -8.20798 -6.21453 -0.58883 0.02548 0.24093 0.63371 1.07693 1.38177 1.40789 1.50328 1.62804 1.96956 2.37534 2.40506 3.14707 3.15774 3.20017 3.82768 3.87290 4.01651 4.04204 4.12174 4.43158 4.58392 4.58514 4.66528 4.68886 4.68970 4.72538 4.73075 4.91677 4.93243 4.93992 5.08257 5.12216 5.12725 5.29946 5.30569 5.36772 5.41601 5.50669 5.55052 5.66528 5.76422 6.06400 6.34759 6.38946 6.69910 6.72341 6.86088 7.41146 8.94783 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.028134 B = 0.002099 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.006362 B =13333.732975 C =14121.751072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.000 4.000 3 N -0.479 5.479 4 C 0.026 3.974 5 C -0.079 4.079 6 C -0.041 4.041 7 N -0.587 5.587 8 C 0.503 3.497 9 O -0.502 6.502 10 C 0.517 3.483 11 O -0.536 6.536 12 N -0.676 5.676 13 C 0.133 3.867 14 C -0.059 4.059 15 C -0.128 4.128 16 C -0.128 4.128 17 C -0.003 4.003 18 C -0.503 4.503 19 H 0.050 0.950 20 C 0.002 3.998 21 N -0.952 5.952 22 Si 0.937 3.063 23 H -0.272 1.272 24 H -0.292 1.292 25 H -0.246 1.246 26 S 0.226 5.774 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.438 0.562 34 H 0.419 0.581 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.062 0.938 38 H 0.045 0.955 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.045 0.955 42 H 0.062 0.938 43 H 0.021 0.979 44 H 0.019 0.981 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.221 23.915 -0.163 30.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.278 4.278 3 N -0.195 5.195 4 C -0.110 4.110 5 C -0.138 4.138 6 C -0.258 4.258 7 N -0.235 5.235 8 C 0.285 3.715 9 O -0.377 6.377 10 C 0.296 3.704 11 O -0.414 6.414 12 N -0.329 5.329 13 C 0.010 3.990 14 C -0.059 4.059 15 C -0.185 4.185 16 C -0.185 4.185 17 C -0.040 4.040 18 C -0.541 4.541 19 H 0.068 0.932 20 C -0.194 4.194 21 N -0.594 5.594 22 Si 0.762 3.238 23 H -0.197 1.197 24 H -0.218 1.218 25 H -0.170 1.170 26 S 0.479 5.521 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.111 0.889 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.280 0.720 34 H 0.258 0.742 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.039 0.961 44 H 0.037 0.963 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.522 23.147 -0.175 30.281 hybrid contribution 1.769 0.314 0.027 1.797 sum -17.753 23.461 -0.148 29.421 Atomic orbital electron populations 1.20570 0.82792 1.05186 1.04983 1.27849 1.03632 0.92591 1.03709 1.66240 1.03722 1.32590 1.16970 1.20550 0.91345 0.92882 1.06242 1.20419 0.95341 0.94099 1.03928 1.23521 0.90314 0.96796 1.15155 1.42265 1.05510 1.07338 1.68428 1.20438 0.90430 0.82790 0.77886 1.90745 1.45314 1.54514 1.47124 1.19460 0.87982 0.83940 0.78979 1.90796 1.45524 1.55448 1.49604 1.45857 1.10906 1.05835 1.70313 1.21627 0.80656 0.93822 1.02856 1.20580 0.97060 0.91610 0.96688 1.21747 0.99098 1.01301 0.96401 1.21744 0.99067 1.01270 0.96453 1.19564 0.93109 0.94710 0.96657 1.21376 0.93124 0.91289 1.48298 0.93230 1.25887 1.02976 0.95444 0.95106 1.70052 1.27598 1.08121 1.53654 0.85857 0.79420 0.79701 0.78844 1.19724 1.21835 1.16968 1.84874 0.92404 1.06837 1.67956 0.88333 0.88422 0.88911 0.89522 0.89748 0.89837 0.71995 0.74214 0.90668 0.90610 0.91887 0.93551 0.93049 0.93076 0.93538 0.91879 0.96118 0.96264 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.46 71.24 0.75 0.03 16 2 C 0.00 -0.01 7.38 88.53 0.65 0.65 16 3 N -0.48 -9.89 10.53 -178.84 -1.88 -11.77 16 4 C 0.03 0.50 6.77 41.71 0.28 0.78 16 5 C -0.08 -1.01 10.07 71.24 0.72 -0.29 16 6 C -0.04 -0.82 7.17 82.63 0.59 -0.23 16 7 N -0.59 -11.10 5.38 -307.35 -1.65 -12.75 16 8 C 0.50 11.15 7.85 87.21 0.68 11.83 16 9 O -0.50 -12.34 14.10 -3.48 -0.05 -12.39 16 10 C 0.52 12.43 7.88 87.21 0.69 13.12 16 11 O -0.54 -14.72 16.47 -3.33 -0.05 -14.78 16 12 N -0.68 -16.27 4.95 -464.61 -2.30 -18.57 16 13 C 0.13 3.71 4.56 86.38 0.39 4.10 16 14 C -0.06 -1.96 0.54 -52.18 -0.03 -1.98 16 15 C -0.13 -4.13 8.05 71.98 0.58 -3.55 16 16 C -0.13 -4.13 8.05 71.98 0.58 -3.55 16 17 C 0.00 -0.11 3.11 29.85 0.09 -0.01 16 18 C -0.50 -26.55 8.20 25.60 0.21 -26.34 16 19 H 0.05 2.85 5.92 -2.91 -0.02 2.84 16 20 C 0.00 0.11 5.47 84.66 0.46 0.57 16 21 N -0.95 -58.12 13.96 21.45 0.30 -57.82 16 22 Si 0.94 43.06 27.47 68.60 1.88 44.94 16 23 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 24 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 25 H -0.25 -10.43 6.54 99.48 0.65 -9.78 16 26 S 0.23 4.32 20.41 -56.49 -1.15 3.16 16 27 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.08 0.82 7.22 -2.39 -0.02 0.80 16 33 H 0.44 6.68 7.09 -92.71 -0.66 6.02 16 34 H 0.42 9.34 5.63 -92.71 -0.52 8.82 16 35 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.06 1.64 6.86 -2.39 -0.02 1.62 16 38 H 0.05 1.77 6.62 -2.39 -0.02 1.75 16 39 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.05 1.77 6.62 -2.39 -0.02 1.76 16 42 H 0.06 1.64 6.86 -2.39 -0.02 1.62 16 43 H 0.02 0.87 7.20 -2.39 -0.02 0.86 16 44 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 45 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 Total: -1.00 -67.86 378.74 1.55 -66.31 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -0.19 Total: 18.56 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: 6.65 Total: -4.88 kcal Atomic # 7 Polarization: -95.38 SS G_CDS: -5.54 Total: -100.92 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.10 Total: -27.17 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.88 Total: 44.94 kcal Atomic # 16 Polarization: 4.32 SS G_CDS: -1.15 Total: 3.16 kcal Total: -67.86 1.55 -66.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357989931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.753 kcal (2) G-P(sol) polarization free energy of solvation -67.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds