Wall clock time and date at job start Tue Mar 31 2020 22:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31913 * 122.71787 * 2 1 4 4 C 1.29686 * 116.92970 * 180.02562 * 3 2 1 5 5 N 1.38745 * 124.94424 * 179.97438 * 4 3 2 6 6 C 1.34777 * 120.00150 * 180.02562 * 5 4 3 7 7 O 1.21391 * 119.99729 * 359.72949 * 6 5 4 8 8 C 1.49306 * 120.00415 * 180.02562 * 6 5 4 9 9 O 1.21363 * 119.99472 * 359.72850 * 8 6 5 10 10 N 1.34777 * 120.00073 * 179.72999 * 8 6 5 11 11 C 1.46496 * 119.99614 * 180.02562 * 10 8 6 12 12 C 1.52998 * 109.46851 * 179.97438 * 11 10 8 13 13 C 1.52998 * 109.47322 * 299.99616 * 12 11 10 14 14 C 1.53005 * 109.47179 * 60.00142 * 12 11 10 15 15 C 1.53006 * 109.47298 * 179.97438 * 12 11 10 16 16 C 1.50696 * 109.47210 * 180.02562 * 15 12 11 17 17 H 1.08002 * 120.00318 * 0.02562 * 16 15 12 18 18 C 1.37879 * 119.99926 * 180.02562 * 16 15 12 19 19 N 1.31513 * 119.99816 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99923 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47206 * 60.00127 * 20 18 16 22 22 H 1.48506 * 109.46864 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47002 * 299.99721 * 20 18 16 24 24 S 1.70967 * 110.10871 * 0.26578 * 4 3 2 25 25 C 1.33528 * 122.72170 * 180.02562 * 2 1 3 26 26 C 1.50701 * 125.96753 * 0.02562 * 25 2 1 27 27 H 1.08999 * 109.47061 * 89.97337 * 1 2 3 28 28 H 1.08999 * 109.47178 * 209.97767 * 1 2 3 29 29 H 1.09003 * 109.47247 * 329.97699 * 1 2 3 30 30 H 0.97004 * 120.00203 * 0.02562 * 5 4 3 31 31 H 0.96996 * 119.99887 * 359.97438 * 10 8 6 32 32 H 1.09000 * 109.47287 * 299.99298 * 11 10 8 33 33 H 1.09002 * 109.47320 * 59.99900 * 11 10 8 34 34 H 1.09002 * 109.47051 * 60.00463 * 13 12 11 35 35 H 1.09005 * 109.47120 * 179.97438 * 13 12 11 36 36 H 1.08994 * 109.47233 * 300.00059 * 13 12 11 37 37 H 1.09000 * 109.47317 * 60.00013 * 14 12 11 38 38 H 1.08995 * 109.46937 * 180.02562 * 14 12 11 39 39 H 1.09002 * 109.46811 * 299.99946 * 14 12 11 40 40 H 1.09001 * 109.46675 * 300.00507 * 15 12 11 41 41 H 1.08994 * 109.47046 * 60.00071 * 15 12 11 42 42 H 0.97005 * 119.99644 * 180.02562 * 19 18 16 43 43 H 1.08999 * 109.47331 * 90.00353 * 26 25 2 44 44 H 1.09002 * 109.47420 * 210.00068 * 26 25 2 45 45 H 1.09003 * 109.47381 * 329.99714 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2199 1.1098 0.0000 4 6 3.5102 0.9790 -0.0005 5 7 4.4155 2.0304 -0.0011 6 6 5.7397 1.7795 -0.0021 7 8 6.1403 0.6335 0.0024 8 6 6.7140 2.9108 -0.0022 9 8 6.3135 4.0564 -0.0063 10 7 8.0382 2.6598 0.0023 11 6 8.9941 3.7699 0.0028 12 6 10.4199 3.2151 0.0088 13 6 10.6296 2.3611 1.2608 14 6 10.6378 2.3550 -1.2377 15 6 11.4184 4.3745 0.0087 16 6 12.8228 3.8280 0.0141 17 1 12.9869 2.7605 0.0168 18 6 13.8982 4.6908 0.0154 19 7 13.6984 5.9906 0.0116 20 14 15.6391 4.0134 0.0228 21 1 15.8505 3.1785 -1.1870 22 1 16.6081 5.1387 0.0225 23 1 15.8425 3.1845 1.2380 24 16 3.9330 -0.6775 -0.0085 25 6 2.2287 -1.1234 -0.0005 26 6 1.6810 -2.5273 -0.0017 27 1 -0.3633 0.0005 -1.0277 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3634 0.8898 0.5142 30 1 4.0954 2.9461 -0.0008 31 1 8.3582 1.7441 0.0059 32 1 8.8446 4.3786 -0.8890 33 1 8.8392 4.3824 0.8910 34 1 9.9184 1.5351 1.2605 35 1 11.6453 1.9654 1.2649 36 1 10.4744 2.9738 2.1488 37 1 10.4885 2.9635 -2.1296 38 1 11.6535 1.9594 -1.2331 39 1 9.9265 1.5290 -1.2380 40 1 11.2688 4.9826 -0.8834 41 1 11.2633 4.9875 0.8964 42 1 14.4551 6.5976 0.0122 43 1 1.5494 -2.8652 -1.0296 44 1 2.3779 -3.1897 0.5120 45 1 0.7197 -2.5428 0.5118 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358000325.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:17 Heat of formation + Delta-G solvation = -38.858341 kcal Electronic energy + Delta-G solvation = -26345.821649 eV Core-core repulsion = 22489.979710 eV Total energy + Delta-G solvation = -3855.841939 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.33526 -40.14242 -39.05409 -37.33818 -35.85322 -33.83056 -32.80525 -32.17072 -29.95616 -27.78002 -27.02640 -26.58960 -26.04211 -24.94290 -23.57023 -22.55075 -21.15505 -20.09742 -18.89367 -18.27629 -17.62955 -17.27552 -16.61053 -16.42178 -16.36396 -15.50480 -15.38538 -14.66328 -14.55350 -14.34686 -14.16934 -13.69817 -13.41885 -13.36308 -13.23636 -13.21696 -13.01833 -12.87353 -12.34440 -12.33465 -12.29452 -12.10600 -11.26745 -11.11033 -11.07022 -11.05403 -10.90683 -10.69376 -10.52631 -10.33188 -10.04815 -9.98992 -9.97738 -9.38377 -9.28037 -9.13890 -9.01550 -8.46741 -8.40266 -6.04562 -4.06148 0.26417 0.78998 1.12100 1.49783 1.81147 2.45277 2.93456 3.23288 3.29695 3.35267 3.36737 4.11664 4.23930 4.41744 4.65909 4.76083 5.05857 5.15451 5.22595 5.29827 5.30753 5.30771 5.47093 5.49468 5.53025 5.53537 5.63530 5.99710 6.02552 6.06074 6.08051 6.19476 6.27048 6.27360 6.55992 6.59616 6.94550 6.97265 6.99510 7.03620 7.29850 7.46017 7.56514 7.67690 7.78369 7.93293 8.34548 8.98036 9.57295 11.06708 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.033867 B = 0.001929 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.554027 B =14513.460573 C =15133.024014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.084 3.916 3 N -0.503 5.503 4 C 0.236 3.764 5 N -0.597 5.597 6 C 0.508 3.492 7 O -0.484 6.484 8 C 0.511 3.489 9 O -0.514 6.514 10 N -0.679 5.679 11 C 0.124 3.876 12 C -0.073 4.073 13 C -0.131 4.131 14 C -0.131 4.131 15 C 0.037 3.963 16 C -0.513 4.513 17 H 0.060 0.940 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.890 3.110 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 S 0.247 5.753 25 C -0.284 4.284 26 C -0.068 4.068 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.436 0.564 31 H 0.413 0.587 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.030 0.970 35 H 0.070 0.930 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.030 0.970 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.261 0.739 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.087 -15.091 -0.047 28.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.049 4.049 3 N -0.226 5.226 4 C -0.131 4.131 5 N -0.249 5.249 6 C 0.289 3.711 7 O -0.357 6.357 8 C 0.289 3.711 9 O -0.391 6.391 10 N -0.332 5.332 11 C 0.002 3.998 12 C -0.074 4.074 13 C -0.188 4.188 14 C -0.188 4.188 15 C 0.000 4.000 16 C -0.552 4.552 17 H 0.078 0.922 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.718 3.282 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 S 0.498 5.502 25 C -0.406 4.406 26 C -0.127 4.127 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.277 0.723 31 H 0.251 0.749 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.049 0.951 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.049 0.951 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.071 0.929 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -23.103 -14.821 -0.055 27.448 hybrid contribution 0.106 0.066 -0.001 0.125 sum -22.997 -14.755 -0.056 27.324 Atomic orbital electron populations 1.20354 0.87113 1.03253 1.02881 1.19716 0.97616 0.85538 1.01987 1.66118 1.02219 1.32829 1.21421 1.23183 0.90635 0.94208 1.05029 1.42398 1.03872 1.09703 1.68887 1.20869 0.82542 0.90669 0.77027 1.90717 1.77305 1.21888 1.45746 1.19245 0.83890 0.87842 0.80119 1.90823 1.78547 1.21072 1.48633 1.46064 1.04156 1.12895 1.70055 1.21945 0.87720 0.87396 1.02759 1.20959 0.92108 0.98846 0.95457 1.21800 1.01815 0.98070 0.97102 1.21802 1.01806 0.98042 0.97138 1.19091 0.92143 0.91185 0.97610 1.21124 0.90567 0.92824 1.50643 0.92234 1.25012 0.99138 0.94863 0.95459 1.69949 1.31087 1.01671 1.50599 0.86691 0.84510 0.78429 0.78554 1.20307 1.21396 1.20302 1.84913 1.01830 0.95677 1.67780 1.26187 0.98385 1.00981 1.15018 1.20153 1.00886 0.89048 1.02650 0.90660 0.90592 0.90701 0.72324 0.74922 0.90720 0.90728 0.95061 0.91117 0.93178 0.93179 0.91117 0.95065 0.96213 0.96209 0.92935 0.90793 0.91286 0.90480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.06 36.00 0.36 -0.16 16 2 C 0.08 0.84 6.74 -84.21 -0.57 0.28 16 3 N -0.50 -6.09 10.58 -11.33 -0.12 -6.21 16 4 C 0.24 2.83 8.18 -87.55 -0.72 2.12 16 5 N -0.60 -6.85 5.39 -13.55 -0.07 -6.92 16 6 C 0.51 6.26 7.85 -11.65 -0.09 6.17 16 7 O -0.48 -6.30 13.93 5.46 0.08 -6.23 16 8 C 0.51 6.96 7.88 -11.65 -0.09 6.87 16 9 O -0.51 -8.09 16.47 5.49 0.09 -8.00 16 10 N -0.68 -9.27 4.95 -60.78 -0.30 -9.57 16 11 C 0.12 1.98 4.56 -4.04 -0.02 1.96 16 12 C -0.07 -1.31 0.54 -154.50 -0.08 -1.39 16 13 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 14 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 15 C 0.04 0.87 4.04 -27.88 -0.11 0.76 16 16 C -0.51 -13.20 7.65 -34.44 -0.26 -13.47 16 17 H 0.06 1.47 5.68 -52.49 -0.30 1.17 16 18 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 19 N -0.89 -25.77 13.29 55.43 0.74 -25.04 16 20 Si 0.89 20.82 29.54 -169.99 -5.02 15.79 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 S 0.25 2.63 20.21 -107.50 -2.17 0.46 16 25 C -0.28 -2.59 6.58 -35.96 -0.24 -2.83 16 26 C -0.07 -0.39 10.09 36.01 0.36 -0.03 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.36 6.70 -51.93 -0.35 0.01 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.44 4.54 8.29 -40.82 -0.34 4.20 16 31 H 0.41 5.20 5.63 -40.82 -0.23 4.97 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 35 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.07 1.29 6.62 -51.93 -0.34 0.94 16 39 H 0.03 0.43 6.86 -51.93 -0.36 0.08 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.08 0.33 6.75 -51.93 -0.35 -0.02 16 LS Contribution 381.14 15.07 5.74 5.74 Total: -1.00 -30.25 381.14 -8.32 -38.57 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -6.33 Total: 3.47 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -0.96 Total: -2.06 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: 0.24 Total: -47.74 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: 0.17 Total: -14.23 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -2.17 Total: 0.46 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.25 -8.32 -38.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358000325.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.288 kcal (2) G-P(sol) polarization free energy of solvation -30.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds