Wall clock time and date at job start Tue Mar 31 2020 22:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31817 * 119.16570 * 2 1 4 4 C 1.32185 * 120.64197 * 180.09333 * 3 2 1 5 5 C 1.39017 * 119.27781 * 359.94733 * 4 3 2 6 6 C 1.37772 * 118.45997 * 359.84875 * 5 4 3 7 7 N 1.31603 * 119.16305 * 179.97438 * 2 1 3 8 8 C 1.50446 * 122.57894 * 180.61900 * 6 5 4 9 9 C 1.52724 * 110.59269 * 342.38783 * 8 6 5 10 10 C 1.53307 * 108.56458 * 50.72406 * 9 8 6 11 11 H 1.09003 * 109.63549 * 50.32928 * 10 9 8 12 12 N 1.46498 * 109.63437 * 170.72682 * 10 9 8 13 13 S 1.65606 * 119.99850 * 214.59975 * 12 10 9 14 14 O 1.42094 * 104.27817 * 308.92879 * 13 12 10 15 15 O 1.42106 * 104.27580 * 181.07110 * 13 12 10 16 16 C 1.81396 * 104.45103 * 65.00095 * 13 12 10 17 17 C 1.52997 * 109.47360 * 179.97438 * 16 13 12 18 18 C 1.53000 * 109.47060 * 180.02562 * 17 16 13 19 19 C 1.50706 * 109.46735 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99928 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99611 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00327 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99743 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46725 * 60.00093 * 23 21 19 25 25 H 1.48505 * 109.46988 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47116 * 300.00069 * 23 21 19 27 27 C 1.50332 * 118.74078 * 179.78594 * 5 4 3 28 28 H 1.09002 * 109.46992 * 90.00326 * 1 2 3 29 29 H 1.09001 * 109.47043 * 210.00291 * 1 2 3 30 30 H 1.08997 * 109.47086 * 330.00420 * 1 2 3 31 31 H 1.08002 * 120.36329 * 179.97438 * 4 3 2 32 32 H 1.08999 * 109.30517 * 102.54543 * 8 6 5 33 33 H 1.09000 * 109.31136 * 222.14424 * 8 6 5 34 34 H 1.09000 * 109.43754 * 291.10260 * 9 8 6 35 35 H 1.09000 * 109.77339 * 170.54805 * 9 8 6 36 36 H 0.96995 * 119.99965 * 34.60152 * 12 10 9 37 37 H 1.09002 * 109.47134 * 59.99751 * 16 13 12 38 38 H 1.08998 * 109.46953 * 300.00489 * 16 13 12 39 39 H 1.09002 * 109.47153 * 59.99820 * 17 16 13 40 40 H 1.09001 * 109.46832 * 300.00011 * 17 16 13 41 41 H 1.09001 * 109.47194 * 299.99650 * 18 17 16 42 42 H 1.08992 * 109.47399 * 59.99823 * 18 17 16 43 43 H 0.97000 * 120.00354 * 180.02562 * 22 21 19 44 44 H 1.09004 * 109.30994 * 42.17376 * 27 5 4 45 45 H 1.09005 * 109.30968 * 282.77411 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1494 1.1510 0.0000 4 6 3.4708 1.1851 -0.0019 5 6 4.1817 -0.0096 -0.0027 6 6 3.4765 -1.1931 0.0016 7 7 2.1483 -1.1492 0.0005 8 6 4.1510 -2.5379 0.0148 9 6 5.6122 -2.4101 -0.4104 10 6 6.2676 -1.3018 0.4216 11 1 6.0625 -1.4678 1.4792 12 7 7.7149 -1.3061 0.1944 13 16 8.7482 -0.9221 1.4303 14 8 8.2498 0.3096 1.9339 15 8 10.0405 -1.0051 0.8451 16 6 8.5133 -2.2483 2.6453 17 6 9.4253 -2.0044 3.8493 18 6 9.2277 -3.1234 4.8739 19 6 10.1256 -2.8827 6.0601 20 1 10.7727 -2.0184 6.0808 21 6 10.1207 -3.7660 7.1187 22 7 9.3323 -4.8183 7.0936 23 14 11.2342 -3.4681 8.5887 24 1 10.8956 -2.1622 9.2095 25 1 11.0414 -4.5535 9.5838 26 1 12.6502 -3.4514 8.1418 27 6 5.6841 0.0432 -0.0097 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 3.9926 2.1307 -0.0023 32 1 4.1072 -2.9531 1.0217 33 1 3.6347 -3.2069 -0.6736 34 1 5.6609 -2.1513 -1.4681 35 1 6.1305 -3.3532 -0.2371 36 1 8.0679 -1.5339 -0.6799 37 1 8.7622 -3.2068 2.1897 38 1 7.4739 -2.2609 2.9730 39 1 9.1769 -1.0459 4.3050 40 1 10.4647 -1.9921 3.5212 41 1 8.1883 -3.1361 5.2021 42 1 9.4764 -4.0816 4.4179 43 1 9.3286 -5.4395 7.8386 44 1 6.0207 0.8192 0.6778 45 1 6.0317 0.2812 -1.0151 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000363511594.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:06 Heat of formation + Delta-G solvation = -54.416168 kcal Electronic energy + Delta-G solvation = -26901.319753 eV Core-core repulsion = 23044.803177 eV Total energy + Delta-G solvation = -3856.516577 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.67351 -38.36176 -36.92051 -35.82616 -34.72567 -34.69498 -34.03080 -32.22634 -31.68773 -30.61157 -27.86349 -27.55625 -25.06699 -23.78038 -23.28919 -23.00759 -20.83099 -20.39511 -19.27443 -18.19276 -17.56357 -16.74997 -16.62726 -16.42533 -15.77355 -15.68212 -15.33736 -14.74099 -14.51772 -14.40395 -14.24055 -14.22373 -13.68470 -13.52636 -13.27035 -12.86403 -12.67034 -12.58816 -12.38716 -12.29933 -12.05017 -11.97564 -11.90108 -11.84148 -11.62382 -11.41085 -11.27634 -10.94164 -10.91914 -10.90544 -10.66110 -10.47746 -9.99367 -9.95003 -9.45407 -9.36746 -9.31271 -9.13591 -8.43198 -6.08341 -4.11609 0.37357 0.60221 0.77448 2.70699 3.30323 3.34363 3.37397 3.39379 3.55956 3.80206 3.84428 4.11244 4.21885 4.22692 4.36286 4.40187 4.49638 4.64924 4.77576 4.91231 4.99257 5.03874 5.07170 5.14570 5.16680 5.21986 5.26862 5.28312 5.40668 5.48406 5.55034 5.58115 5.69411 5.79677 5.83306 5.90144 6.18531 6.21438 6.39444 6.71983 6.78794 6.83122 7.53008 7.62816 7.83192 7.89280 8.29572 8.94358 9.53266 11.02820 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013732 B = 0.002499 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.532104 B =11200.005256 C =12231.885844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.310 3.690 3 N -0.521 5.521 4 C 0.156 3.844 5 C -0.182 4.182 6 C 0.181 3.819 7 N -0.519 5.519 8 C -0.073 4.073 9 C -0.126 4.126 10 C 0.153 3.847 11 H 0.092 0.908 12 N -1.119 6.119 13 S 2.598 3.402 14 O -0.959 6.959 15 O -0.962 6.962 16 C -0.609 4.609 17 C -0.106 4.106 18 C 0.031 3.969 19 C -0.528 4.528 20 H 0.058 0.942 21 C 0.058 3.942 22 N -0.895 5.895 23 Si 0.895 3.105 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.275 1.275 27 C -0.092 4.092 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.170 0.830 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.416 0.584 37 H 0.130 0.870 38 H 0.125 0.875 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.020 0.980 42 H 0.021 0.979 43 H 0.262 0.738 44 H 0.100 0.900 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.302 6.573 -19.517 25.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.043 3.957 3 N -0.235 5.235 4 C -0.011 4.011 5 C -0.187 4.187 6 C 0.036 3.964 7 N -0.234 5.234 8 C -0.111 4.111 9 C -0.165 4.165 10 C 0.045 3.955 11 H 0.110 0.890 12 N -0.875 5.875 13 S 2.694 3.306 14 O -0.949 6.949 15 O -0.952 6.952 16 C -0.741 4.741 17 C -0.145 4.145 18 C -0.007 4.007 19 C -0.566 4.566 20 H 0.076 0.924 21 C -0.143 4.143 22 N -0.534 5.534 23 Si 0.722 3.278 24 H -0.201 1.201 25 H -0.212 1.212 26 H -0.201 1.201 27 C -0.132 4.132 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.187 0.813 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.250 0.750 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.038 0.962 42 H 0.039 0.961 43 H 0.072 0.928 44 H 0.118 0.882 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.869 7.234 -19.234 25.365 hybrid contribution 1.265 -0.575 0.658 1.538 sum -13.604 6.659 -18.576 23.968 Atomic orbital electron populations 1.20548 0.85735 1.04198 1.03743 1.23202 0.98186 0.83422 0.90911 1.68271 1.09856 1.30539 1.14825 1.23321 0.89508 0.98291 0.90002 1.21095 0.98292 0.94857 1.04434 1.21338 0.89217 0.95457 0.90339 1.68224 1.09305 1.30691 1.15155 1.20403 0.94287 0.91987 1.04430 1.21931 0.94356 0.99634 1.00620 1.20712 0.79491 0.94714 1.00553 0.89041 1.55822 1.15856 1.88212 1.27578 1.05420 0.73286 0.76878 0.75037 1.93572 1.80239 1.40431 1.80687 1.93588 1.38359 1.87696 1.75553 1.30555 1.10442 1.18294 1.14809 1.21504 0.96616 1.03057 0.93359 1.19056 0.97538 0.92092 0.92038 1.21210 1.23405 1.09387 1.02590 0.92416 1.25017 0.95712 0.95055 0.98556 1.69940 1.38376 1.13077 1.32030 0.86613 0.81145 0.77867 0.82156 1.20110 1.21230 1.20095 1.20898 0.88801 0.99417 1.04041 0.89771 0.89626 0.89642 0.81264 0.88431 0.88490 0.90495 0.89078 0.74992 0.85146 0.85617 0.91549 0.91533 0.96152 0.96110 0.92811 0.88199 0.89252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.32 36.01 0.37 -0.23 16 2 C 0.31 3.31 7.64 -157.34 -1.20 2.11 16 3 N -0.52 -5.77 10.34 -10.69 -0.11 -5.88 16 4 C 0.16 1.51 10.94 -17.11 -0.19 1.33 16 5 C -0.18 -1.71 5.74 -104.68 -0.60 -2.31 16 6 C 0.18 1.78 6.63 -82.43 -0.55 1.23 16 7 N -0.52 -5.75 10.22 -7.18 -0.07 -5.82 16 8 C -0.07 -0.53 5.95 -28.15 -0.17 -0.70 16 9 C -0.13 -0.78 5.51 -26.71 -0.15 -0.92 16 10 C 0.15 1.25 2.57 -67.86 -0.17 1.08 16 11 H 0.09 0.76 7.13 -51.93 -0.37 0.39 16 12 N -1.12 -9.80 5.38 -4.83 -0.03 -9.83 16 13 S 2.60 34.26 5.38 -107.50 -0.58 33.68 16 14 O -0.96 -15.22 17.35 -57.54 -1.00 -16.22 16 15 O -0.96 -15.71 18.08 -57.54 -1.04 -16.75 16 16 C -0.61 -8.64 5.96 37.16 0.22 -8.42 16 17 C -0.11 -2.07 5.16 -26.73 -0.14 -2.20 16 18 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 19 C -0.53 -14.67 9.11 -34.44 -0.31 -14.98 16 20 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 22 N -0.90 -26.31 13.29 55.43 0.74 -25.58 16 23 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 27 C -0.09 -0.77 5.34 -28.15 -0.15 -0.92 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.41 8.10 -51.93 -0.42 -0.01 16 35 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.42 2.77 8.80 -34.48 -0.30 2.47 16 37 H 0.13 1.63 8.14 -51.92 -0.42 1.20 16 38 H 0.13 1.56 7.45 -51.93 -0.39 1.17 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.10 0.95 7.67 -51.93 -0.40 0.55 16 45 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 383.16 15.07 5.77 5.77 Total: -1.00 -36.41 383.16 -11.52 -47.93 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -6.92 Total: -0.93 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: -3.27 Total: -22.77 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: 0.53 Total: -47.10 kcal Atomic # 8 Polarization: -30.93 SS G_CDS: -2.04 Total: -32.97 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 34.26 SS G_CDS: -0.58 Total: 33.68 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.41 -11.52 -47.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363511594.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.483 kcal (2) G-P(sol) polarization free energy of solvation -36.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds