Wall clock time and date at job start Tue Mar 31 2020 22:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31817 * 119.16570 * 2 1 4 4 C 1.32185 * 120.64197 * 180.09333 * 3 2 1 5 5 C 1.39017 * 119.27781 * 359.94733 * 4 3 2 6 6 C 1.37772 * 118.45997 * 359.84875 * 5 4 3 7 7 N 1.31603 * 119.16305 * 179.97438 * 2 1 3 8 8 C 1.50446 * 122.57894 * 180.61900 * 6 5 4 9 9 C 1.52724 * 110.59269 * 342.38783 * 8 6 5 10 10 C 1.53307 * 108.56458 * 50.72406 * 9 8 6 11 11 H 1.09003 * 109.63549 * 50.32928 * 10 9 8 12 12 N 1.46498 * 109.63437 * 170.72682 * 10 9 8 13 13 S 1.65606 * 119.99850 * 214.59975 * 12 10 9 14 14 O 1.42094 * 104.27817 * 308.92879 * 13 12 10 15 15 O 1.42106 * 104.27580 * 181.07110 * 13 12 10 16 16 C 1.81396 * 104.45103 * 65.00095 * 13 12 10 17 17 C 1.52997 * 109.47360 * 179.97438 * 16 13 12 18 18 C 1.53000 * 109.47060 * 180.02562 * 17 16 13 19 19 C 1.50706 * 109.46735 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99928 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99611 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00327 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99743 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46725 * 60.00093 * 23 21 19 25 25 H 1.48505 * 109.46988 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47116 * 300.00069 * 23 21 19 27 27 C 1.50332 * 118.74078 * 179.78594 * 5 4 3 28 28 H 1.09002 * 109.46992 * 90.00326 * 1 2 3 29 29 H 1.09001 * 109.47043 * 210.00291 * 1 2 3 30 30 H 1.08997 * 109.47086 * 330.00420 * 1 2 3 31 31 H 1.08002 * 120.36329 * 179.97438 * 4 3 2 32 32 H 1.08999 * 109.30517 * 102.54543 * 8 6 5 33 33 H 1.09000 * 109.31136 * 222.14424 * 8 6 5 34 34 H 1.09000 * 109.43754 * 291.10260 * 9 8 6 35 35 H 1.09000 * 109.77339 * 170.54805 * 9 8 6 36 36 H 0.96995 * 119.99965 * 34.60152 * 12 10 9 37 37 H 1.09002 * 109.47134 * 59.99751 * 16 13 12 38 38 H 1.08998 * 109.46953 * 300.00489 * 16 13 12 39 39 H 1.09002 * 109.47153 * 59.99820 * 17 16 13 40 40 H 1.09001 * 109.46832 * 300.00011 * 17 16 13 41 41 H 1.09001 * 109.47194 * 299.99650 * 18 17 16 42 42 H 1.08992 * 109.47399 * 59.99823 * 18 17 16 43 43 H 0.97000 * 120.00354 * 180.02562 * 22 21 19 44 44 H 1.09004 * 109.30994 * 42.17376 * 27 5 4 45 45 H 1.09005 * 109.30968 * 282.77411 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1494 1.1510 0.0000 4 6 3.4708 1.1851 -0.0019 5 6 4.1817 -0.0096 -0.0027 6 6 3.4765 -1.1931 0.0016 7 7 2.1483 -1.1492 0.0005 8 6 4.1510 -2.5379 0.0148 9 6 5.6122 -2.4101 -0.4104 10 6 6.2676 -1.3018 0.4216 11 1 6.0625 -1.4678 1.4792 12 7 7.7149 -1.3061 0.1944 13 16 8.7482 -0.9221 1.4303 14 8 8.2498 0.3096 1.9339 15 8 10.0405 -1.0051 0.8451 16 6 8.5133 -2.2483 2.6453 17 6 9.4253 -2.0044 3.8493 18 6 9.2277 -3.1234 4.8739 19 6 10.1256 -2.8827 6.0601 20 1 10.7727 -2.0184 6.0808 21 6 10.1207 -3.7660 7.1187 22 7 9.3323 -4.8183 7.0936 23 14 11.2342 -3.4681 8.5887 24 1 10.8956 -2.1622 9.2095 25 1 11.0414 -4.5535 9.5838 26 1 12.6502 -3.4514 8.1418 27 6 5.6841 0.0432 -0.0097 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 3.9926 2.1307 -0.0023 32 1 4.1072 -2.9531 1.0217 33 1 3.6347 -3.2069 -0.6736 34 1 5.6609 -2.1513 -1.4681 35 1 6.1305 -3.3532 -0.2371 36 1 8.0679 -1.5339 -0.6799 37 1 8.7622 -3.2068 2.1897 38 1 7.4739 -2.2609 2.9730 39 1 9.1769 -1.0459 4.3050 40 1 10.4647 -1.9921 3.5212 41 1 8.1883 -3.1361 5.2021 42 1 9.4764 -4.0816 4.4179 43 1 9.3286 -5.4395 7.8386 44 1 6.0207 0.8192 0.6778 45 1 6.0317 0.2812 -1.0151 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363511594.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:05 Heat of formation + Delta-G solvation = -80.339026 kcal Electronic energy + Delta-G solvation = -26902.443853 eV Core-core repulsion = 23044.803177 eV Total energy + Delta-G solvation = -3857.640676 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.37638 -39.04935 -38.08967 -37.01850 -36.45594 -35.42786 -34.75152 -34.15832 -32.32827 -31.26766 -29.64779 -28.21808 -25.72128 -25.62228 -23.94517 -23.69534 -22.44751 -21.13214 -20.31261 -18.92871 -18.68893 -18.46415 -17.53089 -17.12666 -17.10917 -16.66293 -16.47600 -16.16120 -15.68216 -15.39275 -15.05450 -14.86038 -14.49037 -14.34793 -14.18924 -14.09730 -13.87136 -13.56808 -13.48585 -13.20526 -13.18376 -13.09492 -13.01831 -12.92494 -12.77891 -12.73359 -12.63638 -12.26440 -12.11012 -12.05058 -11.72973 -11.67793 -11.39162 -11.33732 -11.12035 -10.57018 -10.56000 -10.13375 -10.00468 -8.22776 -6.33535 -0.72245 -0.12040 0.04553 1.40086 1.42263 1.50181 1.76550 2.39588 2.66710 2.76972 2.92925 3.10870 3.13673 3.25037 3.46968 3.57043 3.66194 3.76010 3.83063 3.94038 4.06055 4.20273 4.30895 4.34971 4.41173 4.46743 4.59033 4.61098 4.67778 4.70880 4.84177 4.90170 4.97008 4.99616 5.01708 5.08199 5.15325 5.19641 5.30398 5.45848 5.52762 5.63992 5.79833 6.00684 6.15977 6.20051 6.82197 7.09569 7.35757 8.88381 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013732 B = 0.002499 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.532104 B =11200.005256 C =12231.885844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.293 3.707 3 N -0.541 5.541 4 C 0.145 3.855 5 C -0.185 4.185 6 C 0.169 3.831 7 N -0.537 5.537 8 C -0.071 4.071 9 C -0.117 4.117 10 C 0.144 3.856 11 H 0.090 0.910 12 N -1.097 6.097 13 S 2.630 3.370 14 O -0.985 6.985 15 O -0.991 6.991 16 C -0.613 4.613 17 C -0.107 4.107 18 C 0.031 3.969 19 C -0.553 4.553 20 H 0.060 0.940 21 C 0.003 3.997 22 N -0.929 5.929 23 Si 0.961 3.039 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.267 1.267 27 C -0.089 4.089 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.189 0.811 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.430 0.570 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.003 0.997 42 H 0.004 0.996 43 H 0.265 0.735 44 H 0.088 0.912 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.201 6.593 -20.462 25.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.026 3.974 3 N -0.255 5.255 4 C -0.022 4.022 5 C -0.189 4.189 6 C 0.025 3.975 7 N -0.252 5.252 8 C -0.110 4.110 9 C -0.157 4.157 10 C 0.037 3.963 11 H 0.108 0.892 12 N -0.858 5.858 13 S 2.724 3.276 14 O -0.975 6.975 15 O -0.981 6.981 16 C -0.743 4.743 17 C -0.146 4.146 18 C -0.007 4.007 19 C -0.591 4.591 20 H 0.078 0.922 21 C -0.195 4.195 22 N -0.569 5.569 23 Si 0.785 3.215 24 H -0.193 1.193 25 H -0.207 1.207 26 H -0.192 1.192 27 C -0.129 4.129 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.206 0.794 32 H 0.117 0.883 33 H 0.125 0.875 34 H 0.109 0.891 35 H 0.126 0.874 36 H 0.268 0.732 37 H 0.168 0.832 38 H 0.162 0.838 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.021 0.979 42 H 0.022 0.978 43 H 0.074 0.926 44 H 0.106 0.894 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.752 7.255 -20.186 26.033 hybrid contribution 1.166 -0.573 0.903 1.582 sum -13.586 6.682 -19.283 24.516 Atomic orbital electron populations 1.20632 0.83904 1.04706 1.04717 1.23805 0.99567 0.83395 0.90674 1.68323 1.10564 1.30897 1.15741 1.23743 0.89446 0.99436 0.89570 1.21191 0.98713 0.94702 1.04329 1.21817 0.89156 0.96703 0.89807 1.68294 1.10020 1.30924 1.16002 1.20484 0.94819 0.90804 1.04853 1.21918 0.93316 0.99521 1.00916 1.20913 0.78679 0.95544 1.01169 0.89177 1.55318 1.15686 1.87815 1.26970 1.04250 0.72674 0.75812 0.74820 1.93543 1.80641 1.41768 1.81541 1.93546 1.40586 1.87895 1.76107 1.30535 1.10300 1.20123 1.13354 1.21301 0.98059 1.00947 0.94300 1.18958 0.95815 0.93250 0.92699 1.21727 1.23937 1.09509 1.03946 0.92206 1.25916 0.97192 0.94802 1.01604 1.70053 1.39865 1.13963 1.33044 0.85565 0.79357 0.78028 0.78532 1.19311 1.20671 1.19195 1.20879 0.88121 0.99182 1.04694 0.88470 0.89081 0.89101 0.79387 0.88283 0.87495 0.89105 0.87374 0.73235 0.83244 0.83833 0.91649 0.91595 0.97909 0.97786 0.92641 0.89394 0.87615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 10.32 71.24 0.74 -0.39 16 2 C 0.29 6.12 7.64 138.80 1.06 7.19 16 3 N -0.54 -11.80 10.34 -187.72 -1.94 -13.74 16 4 C 0.14 2.71 10.94 84.83 0.93 3.64 16 5 C -0.18 -3.26 5.74 -19.90 -0.11 -3.37 16 6 C 0.17 3.13 6.63 42.21 0.28 3.41 16 7 N -0.54 -11.54 10.22 -176.64 -1.80 -13.34 16 8 C -0.07 -0.89 5.95 29.68 0.18 -0.72 16 9 C -0.12 -1.09 5.51 30.61 0.17 -0.93 16 10 C 0.14 2.01 2.57 45.04 0.12 2.13 16 11 H 0.09 1.31 7.13 -2.39 -0.02 1.30 16 12 N -1.10 -16.40 5.38 -169.19 -0.91 -17.31 16 13 S 2.63 65.22 5.38 -56.49 -0.30 64.91 16 14 O -0.99 -30.15 17.35 -127.65 -2.21 -32.36 16 15 O -0.99 -30.96 18.08 -127.65 -2.31 -33.27 16 16 C -0.61 -16.56 5.96 71.98 0.43 -16.13 16 17 C -0.11 -4.16 5.16 30.59 0.16 -4.00 16 18 C 0.03 1.56 4.97 29.85 0.15 1.71 16 19 C -0.55 -31.06 9.11 25.60 0.23 -30.83 16 20 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 21 C 0.00 0.18 5.46 84.66 0.46 0.64 16 22 N -0.93 -55.20 13.29 21.45 0.28 -54.91 16 23 Si 0.96 43.80 29.54 68.60 2.03 45.83 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 27 C -0.09 -1.33 5.34 29.68 0.16 -1.17 16 28 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.19 2.52 8.06 -2.91 -0.02 2.50 16 32 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.09 0.64 8.10 -2.39 -0.02 0.62 16 35 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.43 4.37 8.80 -96.75 -0.85 3.51 16 37 H 0.15 3.45 8.14 -2.39 -0.02 3.43 16 38 H 0.14 3.34 7.45 -2.39 -0.02 3.32 16 39 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 42 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 43 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 44 H 0.09 1.56 7.67 -2.39 -0.02 1.55 16 45 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -78.63 383.16 -2.08 -80.72 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: 0.15 Total: 12.28 kcal Atomic # 6 Polarization: -43.76 SS G_CDS: 4.94 Total: -38.82 kcal Atomic # 7 Polarization: -94.93 SS G_CDS: -4.37 Total: -99.30 kcal Atomic # 8 Polarization: -61.11 SS G_CDS: -4.52 Total: -65.63 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: 65.22 SS G_CDS: -0.30 Total: 64.91 kcal Total: -78.63 -2.08 -80.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363511594.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.380 kcal (2) G-P(sol) polarization free energy of solvation -78.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds