Wall clock time and date at job start Tue Mar 31 2020 22:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31819 * 119.16128 * 2 1 4 4 C 1.32186 * 120.64015 * 179.89268 * 3 2 1 5 5 C 1.39021 * 119.27603 * 0.02562 * 4 3 2 6 6 C 1.37771 * 118.46272 * 0.15763 * 5 4 3 7 7 N 1.31601 * 119.16663 * 179.97438 * 2 1 3 8 8 C 1.50439 * 122.58694 * 179.64043 * 6 5 4 9 9 C 1.52816 * 110.43550 * 17.62763 * 8 6 5 10 10 C 1.53316 * 108.50103 * 308.93860 * 9 8 6 11 11 H 1.08998 * 109.63275 * 309.91303 * 10 9 8 12 12 N 1.46506 * 109.63259 * 189.51660 * 10 9 8 13 13 S 1.65594 * 119.99861 * 144.99797 * 12 10 9 14 14 O 1.42100 * 104.27703 * 181.06875 * 13 12 10 15 15 O 1.42093 * 104.27925 * 308.92907 * 13 12 10 16 16 C 1.81404 * 104.44723 * 65.00184 * 13 12 10 17 17 C 1.53001 * 109.46943 * 180.02562 * 16 13 12 18 18 C 1.53006 * 109.47087 * 179.97438 * 17 16 13 19 19 C 1.50700 * 109.47063 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99917 * 0.02562 * 19 18 17 21 21 C 1.37872 * 120.00212 * 179.97438 * 19 18 17 22 22 N 1.31521 * 119.99936 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00384 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46989 * 90.00274 * 23 21 19 25 25 H 1.48500 * 109.47273 * 209.99898 * 23 21 19 26 26 H 1.48498 * 109.47103 * 330.00387 * 23 21 19 27 27 C 1.50340 * 118.73133 * 180.21057 * 5 4 3 28 28 H 1.08998 * 109.47199 * 270.01900 * 1 2 3 29 29 H 1.08996 * 109.47492 * 30.02279 * 1 2 3 30 30 H 1.09003 * 109.46946 * 150.02397 * 1 2 3 31 31 H 1.08005 * 120.36271 * 180.02562 * 4 3 2 32 32 H 1.08999 * 109.31252 * 257.33474 * 8 6 5 33 33 H 1.09007 * 109.31060 * 137.92322 * 8 6 5 34 34 H 1.08997 * 109.63206 * 189.22858 * 9 8 6 35 35 H 1.09008 * 109.62775 * 68.63950 * 9 8 6 36 36 H 0.97001 * 119.99496 * 324.99742 * 12 10 9 37 37 H 1.09003 * 109.46953 * 299.99522 * 16 13 12 38 38 H 1.08994 * 109.47437 * 59.99939 * 16 13 12 39 39 H 1.09003 * 109.46743 * 299.99452 * 17 16 13 40 40 H 1.09003 * 109.47859 * 59.99583 * 17 16 13 41 41 H 1.09003 * 109.46978 * 299.99426 * 18 17 16 42 42 H 1.08994 * 109.47269 * 59.99756 * 18 17 16 43 43 H 0.96994 * 120.00043 * 180.02562 * 22 21 19 44 44 H 1.08998 * 109.30883 * 76.99666 * 27 5 4 45 45 H 1.09000 * 109.14378 * 317.49786 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1494 1.1511 0.0000 4 6 3.4708 1.1852 0.0021 5 6 4.1817 -0.0095 0.0038 6 6 3.4766 -1.1931 -0.0001 7 7 2.1484 -1.1491 0.0005 8 6 4.1509 -2.5378 -0.0066 9 6 5.6107 -2.4049 0.4255 10 6 6.2681 -1.3032 -0.4139 11 1 6.0645 -1.4771 -1.4705 12 7 7.7151 -1.3068 -0.1844 13 16 8.7509 -0.9427 -1.4240 14 8 10.0441 -1.0692 -0.8488 15 8 8.3362 -1.7889 -2.4874 16 6 8.3956 0.7926 -1.8158 17 6 9.2998 1.2523 -2.9612 18 6 8.9997 2.7157 -3.2920 19 6 9.8907 3.1687 -4.4198 20 1 10.5999 2.4814 -4.8571 21 6 9.8000 4.4601 -4.8940 22 7 8.9361 5.2969 -4.3618 23 14 10.9050 5.0219 -6.2913 24 1 10.2321 4.7622 -7.5895 25 1 11.1743 6.4759 -6.1556 26 1 12.1869 4.2740 -6.2400 27 6 5.6841 0.0436 0.0111 28 1 -0.3633 0.0003 1.0276 29 1 -0.3634 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 3.9925 2.1309 0.0025 32 1 4.1095 -2.9570 -1.0119 33 1 3.6309 -3.2052 0.6807 34 1 6.1289 -3.3495 0.2608 35 1 5.6571 -2.1377 1.4814 36 1 8.0663 -1.5226 0.6937 37 1 7.3521 0.8911 -2.1152 38 1 8.5810 1.4090 -0.9362 39 1 10.3434 1.1537 -2.6621 40 1 9.1141 0.6359 -3.8407 41 1 7.9561 2.8139 -3.5912 42 1 9.1851 3.3324 -2.4127 43 1 8.8720 6.2053 -4.6956 44 1 6.0313 0.2862 1.0154 45 1 6.0179 0.8159 -0.6819 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000363511595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:09 Heat of formation + Delta-G solvation = -54.064208 kcal Electronic energy + Delta-G solvation = -27124.319817 eV Core-core repulsion = 23267.818503 eV Total energy + Delta-G solvation = -3856.501315 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.66095 -38.36645 -36.93070 -35.83210 -34.75918 -34.68279 -33.99802 -32.24045 -31.68556 -30.60508 -27.88001 -27.53776 -25.07321 -23.82284 -23.22505 -22.98953 -20.74167 -20.48682 -19.28779 -18.18084 -17.58258 -16.84417 -16.49311 -16.40040 -15.85087 -15.63833 -15.28799 -14.84582 -14.50618 -14.50251 -14.26289 -14.13113 -13.66389 -13.53925 -13.26237 -12.85516 -12.66706 -12.60739 -12.38296 -12.28377 -12.02726 -11.98096 -11.89825 -11.81511 -11.61079 -11.40980 -11.29611 -10.96945 -10.93568 -10.86269 -10.64314 -10.46794 -9.99716 -9.95833 -9.43392 -9.36843 -9.30434 -9.13136 -8.43587 -6.08698 -4.11776 0.37288 0.61530 0.80202 2.70115 3.28564 3.34934 3.38747 3.41483 3.57425 3.82550 3.86351 4.10090 4.19194 4.28168 4.33353 4.40082 4.48002 4.66805 4.81451 4.93735 4.96688 5.04352 5.05310 5.12886 5.17702 5.23429 5.25050 5.27960 5.36658 5.49283 5.53861 5.57278 5.69043 5.74449 5.86036 5.88087 6.19923 6.21437 6.38958 6.74101 6.79367 6.82909 7.52671 7.62406 7.85784 7.89072 8.29428 8.94345 9.53231 11.02466 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010775 B = 0.002990 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.973133 B = 9363.599928 C =11507.004843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.311 3.689 3 N -0.519 5.519 4 C 0.159 3.841 5 C -0.184 4.184 6 C 0.182 3.818 7 N -0.521 5.521 8 C -0.072 4.072 9 C -0.121 4.121 10 C 0.147 3.853 11 H 0.101 0.899 12 N -1.118 6.118 13 S 2.598 3.402 14 O -0.961 6.961 15 O -0.960 6.960 16 C -0.611 4.611 17 C -0.106 4.106 18 C 0.031 3.969 19 C -0.527 4.527 20 H 0.058 0.942 21 C 0.058 3.942 22 N -0.895 5.895 23 Si 0.894 3.106 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.273 1.273 27 C -0.100 4.100 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.172 0.828 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.416 0.584 37 H 0.126 0.874 38 H 0.131 0.869 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.020 0.980 42 H 0.021 0.979 43 H 0.262 0.738 44 H 0.095 0.905 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.576 -14.154 13.959 24.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.044 3.956 3 N -0.233 5.233 4 C -0.008 4.008 5 C -0.189 4.189 6 C 0.037 3.963 7 N -0.235 5.235 8 C -0.110 4.110 9 C -0.160 4.160 10 C 0.039 3.961 11 H 0.119 0.881 12 N -0.874 5.874 13 S 2.694 3.306 14 O -0.952 6.952 15 O -0.950 6.950 16 C -0.743 4.743 17 C -0.145 4.145 18 C -0.007 4.007 19 C -0.565 4.565 20 H 0.076 0.924 21 C -0.143 4.143 22 N -0.534 5.534 23 Si 0.722 3.278 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.197 1.197 27 C -0.140 4.140 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.189 0.811 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.250 0.750 37 H 0.144 0.856 38 H 0.149 0.851 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.038 0.962 42 H 0.039 0.961 43 H 0.071 0.929 44 H 0.113 0.887 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.092 -14.580 13.388 24.298 hybrid contribution 1.187 1.164 -0.206 1.675 sum -12.905 -13.417 13.182 22.810 Atomic orbital electron populations 1.20551 0.85735 1.04200 1.03757 1.23216 0.98201 0.83426 0.90744 1.68293 1.09876 1.30458 1.14674 1.23387 0.89541 0.98359 0.89558 1.21013 0.98002 0.94916 1.04940 1.21322 0.89235 0.95407 0.90322 1.68220 1.09264 1.30716 1.15347 1.20414 0.94274 0.91988 1.04312 1.21862 0.94224 0.99620 1.00294 1.20800 0.79433 0.94480 1.01385 0.88127 1.55786 1.16090 1.86855 1.28650 1.05402 0.73407 0.78201 0.73608 1.93587 1.37873 1.86821 1.76875 1.93576 1.82405 1.63519 1.55518 1.30660 1.10734 1.22564 1.10323 1.21508 0.96786 1.02873 0.93354 1.19055 0.97327 0.87429 0.96879 1.21244 1.20673 0.96866 1.17734 0.92384 1.25013 0.95598 0.96735 0.96995 1.69950 1.35655 1.05816 1.41962 0.86559 0.81041 0.77838 0.82399 1.20562 1.21159 1.19741 1.21050 0.89548 0.99116 1.04271 0.89752 0.89570 0.89683 0.81050 0.88519 0.88580 0.89279 0.90531 0.74991 0.85561 0.85088 0.91512 0.91560 0.96167 0.96103 0.92880 0.88709 0.88998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.32 36.01 0.37 -0.26 16 2 C 0.31 3.42 7.64 -157.34 -1.20 2.22 16 3 N -0.52 -6.09 10.34 -10.68 -0.11 -6.20 16 4 C 0.16 1.64 10.93 -17.11 -0.19 1.45 16 5 C -0.18 -1.75 5.73 -104.68 -0.60 -2.35 16 6 C 0.18 1.79 6.62 -82.43 -0.55 1.25 16 7 N -0.52 -5.79 10.22 -7.18 -0.07 -5.87 16 8 C -0.07 -0.52 5.96 -28.10 -0.17 -0.69 16 9 C -0.12 -0.78 5.51 -26.66 -0.15 -0.92 16 10 C 0.15 1.21 2.72 -67.85 -0.18 1.03 16 11 H 0.10 0.93 7.45 -51.93 -0.39 0.54 16 12 N -1.12 -9.92 5.37 -4.82 -0.03 -9.95 16 13 S 2.60 34.70 5.44 -107.50 -0.58 34.12 16 14 O -0.96 -15.78 18.08 -57.54 -1.04 -16.82 16 15 O -0.96 -15.78 17.40 -57.54 -1.00 -16.78 16 16 C -0.61 -8.57 5.50 37.16 0.20 -8.36 16 17 C -0.11 -2.05 5.16 -26.73 -0.14 -2.19 16 18 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 19 C -0.53 -14.59 9.11 -34.44 -0.31 -14.90 16 20 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 22 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 23 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 27 C -0.10 -0.79 5.26 -28.14 -0.15 -0.93 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.17 1.40 8.06 -52.48 -0.42 0.97 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.41 8.10 -51.92 -0.42 -0.01 16 36 H 0.42 2.80 8.80 -34.47 -0.30 2.49 16 37 H 0.13 1.55 6.74 -51.92 -0.35 1.20 16 38 H 0.13 1.58 8.14 -51.93 -0.42 1.16 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.09 0.72 6.13 -51.93 -0.32 0.41 16 LS Contribution 380.93 15.07 5.74 5.74 Total: -1.00 -36.58 380.93 -11.49 -48.08 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -6.82 Total: -0.75 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: -3.29 Total: -22.48 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: 0.53 Total: -47.47 kcal Atomic # 8 Polarization: -31.56 SS G_CDS: -2.04 Total: -33.60 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 34.70 SS G_CDS: -0.58 Total: 34.12 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.58 -11.49 -48.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363511595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.989 kcal (2) G-P(sol) polarization free energy of solvation -36.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds