Wall clock time and date at job start Tue Mar 31 2020 22:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31819 * 119.16128 * 2 1 4 4 C 1.32186 * 120.64015 * 179.89268 * 3 2 1 5 5 C 1.39021 * 119.27603 * 0.02562 * 4 3 2 6 6 C 1.37771 * 118.46272 * 0.15763 * 5 4 3 7 7 N 1.31601 * 119.16663 * 179.97438 * 2 1 3 8 8 C 1.50439 * 122.58694 * 179.64043 * 6 5 4 9 9 C 1.52816 * 110.43550 * 17.62763 * 8 6 5 10 10 C 1.53316 * 108.50103 * 308.93860 * 9 8 6 11 11 H 1.08998 * 109.63275 * 309.91303 * 10 9 8 12 12 N 1.46506 * 109.63259 * 189.51660 * 10 9 8 13 13 S 1.65594 * 119.99861 * 144.99797 * 12 10 9 14 14 O 1.42100 * 104.27703 * 181.06875 * 13 12 10 15 15 O 1.42093 * 104.27925 * 308.92907 * 13 12 10 16 16 C 1.81404 * 104.44723 * 65.00184 * 13 12 10 17 17 C 1.53001 * 109.46943 * 180.02562 * 16 13 12 18 18 C 1.53006 * 109.47087 * 179.97438 * 17 16 13 19 19 C 1.50700 * 109.47063 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99917 * 0.02562 * 19 18 17 21 21 C 1.37872 * 120.00212 * 179.97438 * 19 18 17 22 22 N 1.31521 * 119.99936 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00384 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46989 * 90.00274 * 23 21 19 25 25 H 1.48500 * 109.47273 * 209.99898 * 23 21 19 26 26 H 1.48498 * 109.47103 * 330.00387 * 23 21 19 27 27 C 1.50340 * 118.73133 * 180.21057 * 5 4 3 28 28 H 1.08998 * 109.47199 * 270.01900 * 1 2 3 29 29 H 1.08996 * 109.47492 * 30.02279 * 1 2 3 30 30 H 1.09003 * 109.46946 * 150.02397 * 1 2 3 31 31 H 1.08005 * 120.36271 * 180.02562 * 4 3 2 32 32 H 1.08999 * 109.31252 * 257.33474 * 8 6 5 33 33 H 1.09007 * 109.31060 * 137.92322 * 8 6 5 34 34 H 1.08997 * 109.63206 * 189.22858 * 9 8 6 35 35 H 1.09008 * 109.62775 * 68.63950 * 9 8 6 36 36 H 0.97001 * 119.99496 * 324.99742 * 12 10 9 37 37 H 1.09003 * 109.46953 * 299.99522 * 16 13 12 38 38 H 1.08994 * 109.47437 * 59.99939 * 16 13 12 39 39 H 1.09003 * 109.46743 * 299.99452 * 17 16 13 40 40 H 1.09003 * 109.47859 * 59.99583 * 17 16 13 41 41 H 1.09003 * 109.46978 * 299.99426 * 18 17 16 42 42 H 1.08994 * 109.47269 * 59.99756 * 18 17 16 43 43 H 0.96994 * 120.00043 * 180.02562 * 22 21 19 44 44 H 1.08998 * 109.30883 * 76.99666 * 27 5 4 45 45 H 1.09000 * 109.14378 * 317.49786 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1494 1.1511 0.0000 4 6 3.4708 1.1852 0.0021 5 6 4.1817 -0.0095 0.0038 6 6 3.4766 -1.1931 -0.0001 7 7 2.1484 -1.1491 0.0005 8 6 4.1509 -2.5378 -0.0066 9 6 5.6107 -2.4049 0.4255 10 6 6.2681 -1.3032 -0.4139 11 1 6.0645 -1.4771 -1.4705 12 7 7.7151 -1.3068 -0.1844 13 16 8.7509 -0.9427 -1.4240 14 8 10.0441 -1.0692 -0.8488 15 8 8.3362 -1.7889 -2.4874 16 6 8.3956 0.7926 -1.8158 17 6 9.2998 1.2523 -2.9612 18 6 8.9997 2.7157 -3.2920 19 6 9.8907 3.1687 -4.4198 20 1 10.5999 2.4814 -4.8571 21 6 9.8000 4.4601 -4.8940 22 7 8.9361 5.2969 -4.3618 23 14 10.9050 5.0219 -6.2913 24 1 10.2321 4.7622 -7.5895 25 1 11.1743 6.4759 -6.1556 26 1 12.1869 4.2740 -6.2400 27 6 5.6841 0.0436 0.0111 28 1 -0.3633 0.0003 1.0276 29 1 -0.3634 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 3.9925 2.1309 0.0025 32 1 4.1095 -2.9570 -1.0119 33 1 3.6309 -3.2052 0.6807 34 1 6.1289 -3.3495 0.2608 35 1 5.6571 -2.1377 1.4814 36 1 8.0663 -1.5226 0.6937 37 1 7.3521 0.8911 -2.1152 38 1 8.5810 1.4090 -0.9362 39 1 10.3434 1.1537 -2.6621 40 1 9.1141 0.6359 -3.8407 41 1 7.9561 2.8139 -3.5912 42 1 9.1851 3.3324 -2.4127 43 1 8.8720 6.2053 -4.6956 44 1 6.0313 0.2862 1.0154 45 1 6.0179 0.8159 -0.6819 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363511595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:08 Heat of formation + Delta-G solvation = -80.220390 kcal Electronic energy + Delta-G solvation = -27125.454034 eV Core-core repulsion = 23267.818503 eV Total energy + Delta-G solvation = -3857.635532 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.38335 -39.06455 -38.11878 -37.04298 -36.46056 -35.44765 -34.74217 -34.16012 -32.34484 -31.27846 -29.64314 -28.21983 -25.85894 -25.50945 -23.95491 -23.69701 -22.37705 -21.18787 -20.33320 -18.93182 -18.72906 -18.47177 -17.53803 -17.12102 -17.11202 -16.68561 -16.45075 -16.09594 -15.85986 -15.35053 -15.11096 -14.86486 -14.51545 -14.34369 -14.20872 -14.06138 -13.86847 -13.59754 -13.49629 -13.22684 -13.18634 -13.14024 -12.99306 -12.92108 -12.77290 -12.74044 -12.61946 -12.25702 -12.10147 -12.05973 -11.73668 -11.68555 -11.36261 -11.35084 -11.14022 -10.56975 -10.55875 -10.13763 -10.00902 -8.22661 -6.33008 -0.73235 -0.12416 0.04651 1.40091 1.40156 1.51533 1.74940 2.39553 2.66591 2.76211 2.92410 3.11208 3.14684 3.22895 3.46049 3.54603 3.65039 3.75693 3.81854 3.92834 4.06594 4.22500 4.31827 4.33251 4.39924 4.45721 4.57553 4.59988 4.66385 4.70720 4.79373 4.89798 4.95212 4.98133 5.01856 5.08545 5.13665 5.18357 5.29197 5.46607 5.52267 5.65093 5.80419 6.00805 6.15896 6.20704 6.82832 7.09780 7.36274 8.88532 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.010775 B = 0.002990 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2597.973133 B = 9363.599928 C =11507.004843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.293 3.707 3 N -0.543 5.543 4 C 0.144 3.856 5 C -0.184 4.184 6 C 0.170 3.830 7 N -0.536 5.536 8 C -0.069 4.069 9 C -0.114 4.114 10 C 0.141 3.859 11 H 0.091 0.909 12 N -1.096 6.096 13 S 2.628 3.372 14 O -0.990 6.990 15 O -0.990 6.990 16 C -0.613 4.613 17 C -0.106 4.106 18 C 0.032 3.968 19 C -0.552 4.552 20 H 0.059 0.941 21 C 0.004 3.996 22 N -0.928 5.928 23 Si 0.959 3.041 24 H -0.273 1.273 25 H -0.281 1.281 26 H -0.265 1.265 27 C -0.099 4.099 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.186 0.814 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.431 0.569 37 H 0.144 0.856 38 H 0.152 0.848 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.003 0.997 42 H 0.005 0.995 43 H 0.264 0.736 44 H 0.116 0.884 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.392 -15.144 14.739 25.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.026 3.974 3 N -0.257 5.257 4 C -0.023 4.023 5 C -0.189 4.189 6 C 0.026 3.974 7 N -0.251 5.251 8 C -0.107 4.107 9 C -0.153 4.153 10 C 0.033 3.967 11 H 0.109 0.891 12 N -0.857 5.857 13 S 2.723 3.277 14 O -0.980 6.980 15 O -0.980 6.980 16 C -0.744 4.744 17 C -0.146 4.146 18 C -0.006 4.006 19 C -0.590 4.590 20 H 0.077 0.923 21 C -0.194 4.194 22 N -0.568 5.568 23 Si 0.784 3.216 24 H -0.198 1.198 25 H -0.206 1.206 26 H -0.189 1.189 27 C -0.139 4.139 28 H 0.115 0.885 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.203 0.797 32 H 0.116 0.884 33 H 0.126 0.874 34 H 0.118 0.882 35 H 0.111 0.889 36 H 0.268 0.732 37 H 0.162 0.838 38 H 0.171 0.829 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.021 0.979 42 H 0.023 0.977 43 H 0.073 0.927 44 H 0.134 0.866 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.893 -15.574 14.174 25.228 hybrid contribution 1.067 1.457 -0.407 1.852 sum -12.825 -14.117 13.767 23.522 Atomic orbital electron populations 1.20633 0.83917 1.04698 1.04722 1.23803 0.99567 0.83366 0.90630 1.68324 1.10682 1.31037 1.15707 1.23744 0.89505 0.99479 0.89556 1.21143 0.98737 0.94534 1.04457 1.21813 0.89155 0.96668 0.89758 1.68287 1.10002 1.30794 1.16014 1.20481 0.94639 0.90790 1.04787 1.21855 0.93308 0.99351 1.00772 1.20943 0.78637 0.95597 1.01479 0.89096 1.55281 1.15936 1.86117 1.28360 1.04255 0.72823 0.77144 0.73436 1.93545 1.40077 1.86987 1.77428 1.93541 1.82862 1.64169 1.57397 1.30643 1.10578 1.23938 1.09221 1.21303 0.98091 0.99625 0.95541 1.18948 0.95712 0.90588 0.95350 1.21751 1.21188 0.97314 1.18745 0.92293 1.25892 0.97026 0.96949 0.99575 1.70059 1.37138 1.06195 1.43439 0.85529 0.79327 0.77485 0.79245 1.19847 1.20590 1.18926 1.21084 0.88442 0.98816 1.05511 0.88462 0.89279 0.88905 0.79668 0.88375 0.87383 0.88155 0.88863 0.73178 0.83837 0.82947 0.91569 0.91758 0.97882 0.97666 0.92689 0.86592 0.89059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.18 10.32 71.24 0.74 -0.45 16 2 C 0.29 6.35 7.64 138.80 1.06 7.42 16 3 N -0.54 -12.67 10.34 -187.72 -1.94 -14.61 16 4 C 0.14 2.88 10.93 84.83 0.93 3.81 16 5 C -0.18 -3.25 5.73 -19.90 -0.11 -3.36 16 6 C 0.17 3.14 6.62 42.21 0.28 3.42 16 7 N -0.54 -11.54 10.22 -176.64 -1.80 -13.35 16 8 C -0.07 -0.85 5.96 29.70 0.18 -0.68 16 9 C -0.11 -1.12 5.51 30.64 0.17 -0.95 16 10 C 0.14 1.98 2.72 45.04 0.12 2.10 16 11 H 0.09 1.51 7.45 -2.39 -0.02 1.49 16 12 N -1.10 -16.55 5.37 -169.17 -0.91 -17.45 16 13 S 2.63 66.03 5.44 -56.49 -0.31 65.72 16 14 O -0.99 -31.05 18.08 -127.65 -2.31 -33.35 16 15 O -0.99 -31.37 17.40 -127.65 -2.22 -33.59 16 16 C -0.61 -16.42 5.50 71.98 0.40 -16.02 16 17 C -0.11 -4.11 5.16 30.60 0.16 -3.95 16 18 C 0.03 1.61 4.97 29.85 0.15 1.75 16 19 C -0.55 -30.88 9.11 25.60 0.23 -30.64 16 20 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 21 C 0.00 0.22 5.46 84.65 0.46 0.68 16 22 N -0.93 -54.92 13.29 21.45 0.28 -54.63 16 23 Si 0.96 43.82 29.54 68.60 2.03 45.85 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 25 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 26 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 27 C -0.10 -1.33 5.26 29.68 0.16 -1.17 16 28 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.09 1.20 8.14 -2.39 -0.02 1.19 16 30 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.19 2.91 8.06 -2.91 -0.02 2.89 16 32 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 34 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.09 0.65 8.10 -2.38 -0.02 0.63 16 36 H 0.43 4.37 8.80 -96.74 -0.85 3.52 16 37 H 0.14 3.33 6.74 -2.39 -0.02 3.31 16 38 H 0.15 3.40 8.14 -2.39 -0.02 3.38 16 39 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 42 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 43 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 44 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.09 1.26 6.13 -2.39 -0.01 1.24 16 Total: -1.00 -79.00 380.93 -2.12 -81.11 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 0.15 Total: 12.34 kcal Atomic # 6 Polarization: -42.95 SS G_CDS: 4.91 Total: -38.04 kcal Atomic # 7 Polarization: -95.67 SS G_CDS: -4.37 Total: -100.04 kcal Atomic # 8 Polarization: -62.42 SS G_CDS: -4.53 Total: -66.95 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: 66.03 SS G_CDS: -0.31 Total: 65.72 kcal Total: -79.00 -2.12 -81.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363511595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.894 kcal (2) G-P(sol) polarization free energy of solvation -78.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds