Wall clock time and date at job start Tue Mar 31 2020 22:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33633 * 122.74601 * 2 1 4 4 S 1.76200 * 107.92295 * 179.97438 * 3 2 1 5 5 C 1.70973 * 90.28041 * 0.27488 * 4 3 2 6 6 C 1.50701 * 124.91598 * 179.83794 * 5 4 3 7 7 H 1.09004 * 109.68229 * 166.75585 * 6 5 4 8 8 C 1.53294 * 109.68316 * 46.24150 * 6 5 4 9 9 O 1.42963 * 109.22502 * 187.97645 * 8 6 5 10 10 C 1.42952 * 114.17055 * 62.57912 * 9 8 6 11 11 C 1.53302 * 109.22343 * 297.42164 * 10 9 8 12 12 N 1.47154 * 109.68386 * 287.27769 * 6 5 4 13 13 C 1.34776 * 120.97986 * 350.23293 * 12 6 5 14 14 O 1.21283 * 119.99904 * 4.56150 * 13 12 6 15 15 C 1.50705 * 119.99921 * 184.56730 * 13 12 6 16 16 H 1.09002 * 109.46784 * 319.99931 * 15 13 12 17 17 N 1.46899 * 109.47140 * 200.00101 * 15 13 12 18 18 C 1.52998 * 109.47208 * 79.99947 * 15 13 12 19 19 C 1.52995 * 109.47300 * 185.00016 * 18 15 13 20 20 C 1.50703 * 109.47257 * 180.02562 * 19 18 15 21 21 H 1.07989 * 120.00119 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99926 * 180.02562 * 20 19 18 23 23 N 1.31526 * 120.00106 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00112 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47032 * 59.99530 * 24 22 20 26 26 H 1.48498 * 109.46970 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.46882 * 299.99853 * 24 22 20 28 28 N 1.29029 * 110.17141 * 359.84194 * 5 4 3 29 29 H 1.09001 * 109.47161 * 269.70608 * 1 2 3 30 30 H 1.09002 * 109.47041 * 149.70707 * 1 2 3 31 31 H 1.09004 * 109.47707 * 29.71076 * 1 2 3 32 32 H 1.08002 * 126.04551 * 0.04244 * 3 2 1 33 33 H 1.08998 * 109.50924 * 307.89859 * 8 6 5 34 34 H 1.08999 * 109.51531 * 67.99727 * 8 6 5 35 35 H 1.09003 * 109.51296 * 57.34358 * 10 9 8 36 36 H 1.08996 * 109.51873 * 177.44948 * 10 9 8 37 37 H 1.08997 * 109.68364 * 172.02034 * 11 10 9 38 38 H 1.08998 * 109.67977 * 292.54443 * 11 10 9 39 39 H 1.00892 * 111.00123 * 176.04939 * 17 15 13 40 40 H 1.00906 * 110.99860 * 299.99834 * 17 15 13 41 41 H 1.09003 * 109.47244 * 304.99993 * 18 15 13 42 42 H 1.09003 * 109.47111 * 64.99609 * 18 15 13 43 43 H 1.09003 * 109.46953 * 300.00155 * 19 18 15 44 44 H 1.09003 * 109.47371 * 59.99752 * 19 18 15 45 45 H 0.96998 * 119.99941 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2298 1.1240 0.0000 4 16 3.9332 0.6732 0.0007 5 6 3.5039 -0.9818 -0.0072 6 6 4.4834 -2.1270 -0.0142 7 1 3.9631 -3.0565 0.2168 8 6 5.5788 -1.8758 1.0284 9 8 6.5990 -2.8674 0.8875 10 6 7.2702 -2.8415 -0.3744 11 6 6.2614 -3.1422 -1.4889 12 7 5.1168 -2.2294 -1.3385 13 6 4.6624 -1.5083 -2.3825 14 8 3.7724 -0.7005 -2.2200 15 6 5.2599 -1.7059 -3.7518 16 1 6.3390 -1.8315 -3.6626 17 7 4.9709 -0.5320 -4.5863 18 6 4.6531 -2.9529 -4.3980 19 6 5.3480 -3.2247 -5.7336 20 6 4.7498 -4.4527 -6.3704 21 1 3.9540 -4.9861 -5.8722 22 6 5.2194 -4.8957 -7.5887 23 7 6.1891 -4.2463 -8.1954 24 14 4.4785 -6.4181 -8.3778 25 1 3.0283 -6.1992 -8.6103 26 1 5.1530 -6.6818 -9.6742 27 1 4.6648 -7.5834 -7.4762 28 7 2.2198 -1.1083 -0.0065 29 1 -0.3633 -0.0053 1.0277 30 1 -0.3633 -0.8874 -0.5184 31 1 -0.3635 0.8926 -0.5093 32 1 1.8391 2.1308 0.0006 33 1 6.0089 -0.8863 0.8733 34 1 5.1496 -1.9335 2.0286 35 1 7.7065 -1.8555 -0.5346 36 1 8.0585 -3.5942 -0.3831 37 1 6.7303 -2.9860 -2.4604 38 1 5.9210 -4.1744 -1.4071 39 1 5.4154 -0.6114 -5.4885 40 1 3.9761 -0.3941 -4.6842 41 1 4.7902 -3.8083 -3.7364 42 1 3.5885 -2.7924 -4.5683 43 1 5.2109 -2.3694 -6.3952 44 1 6.4126 -3.3853 -5.5633 45 1 6.5192 -4.5578 -9.0527 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424181950.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:30 Heat of formation + Delta-G solvation = -19.648609 kcal Electronic energy + Delta-G solvation = -28322.847656 eV Core-core repulsion = 24467.838713 eV Total energy + Delta-G solvation = -3855.008942 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.90489 -39.39095 -38.54653 -35.72851 -34.96701 -33.26270 -32.75895 -30.86679 -29.95003 -28.50207 -27.50895 -26.48621 -25.33677 -24.05498 -22.88193 -22.00455 -20.45103 -19.66830 -19.17781 -17.89143 -17.19507 -16.75357 -16.36005 -16.05943 -15.75974 -15.57521 -15.15223 -14.96363 -14.54265 -14.42537 -14.23225 -14.02548 -13.65905 -13.27260 -13.13662 -12.98547 -12.83364 -12.57308 -12.45842 -12.28530 -12.12173 -11.74266 -11.69755 -11.20082 -11.16133 -11.08375 -10.93415 -10.73000 -10.45041 -10.04878 -10.03382 -9.54827 -9.43380 -9.30394 -9.18783 -8.62340 -8.47245 -8.33578 -7.98498 -6.11939 -4.15219 0.84155 1.57833 1.92028 2.59261 2.76087 3.10765 3.26669 3.31517 3.34286 3.36853 3.91508 4.32802 4.37298 4.63481 4.68359 4.84661 4.86776 4.97506 4.99133 5.13516 5.19720 5.22158 5.24298 5.30765 5.40254 5.44925 5.53727 5.55140 5.65200 5.72367 5.74019 5.91701 6.18521 6.21796 6.35374 6.46957 6.71308 6.80709 7.18563 7.45005 7.48624 7.56800 7.82156 7.84987 7.91826 8.23993 8.27791 8.90304 9.50010 10.98843 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013117 B = 0.003361 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.055709 B = 8329.718748 C = 9339.081771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.073 3.927 3 C -0.266 4.266 4 S 0.143 5.857 5 C 0.086 3.914 6 C 0.187 3.813 7 H 0.108 0.892 8 C 0.057 3.943 9 O -0.370 6.370 10 C 0.043 3.957 11 C 0.072 3.928 12 N -0.616 5.616 13 C 0.526 3.474 14 O -0.512 6.512 15 C 0.078 3.922 16 H 0.096 0.904 17 N -0.829 5.829 18 C -0.136 4.136 19 C 0.027 3.973 20 C -0.525 4.525 21 H 0.054 0.946 22 C 0.060 3.940 23 N -0.893 5.893 24 Si 0.893 3.107 25 H -0.277 1.277 26 H -0.286 1.286 27 H -0.276 1.276 28 N -0.469 5.469 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.169 0.831 33 H 0.060 0.940 34 H 0.112 0.888 35 H 0.060 0.940 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.355 0.645 40 H 0.345 0.655 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.017 0.983 44 H 0.018 0.982 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.863 8.502 19.804 21.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.060 4.060 3 C -0.405 4.405 4 S 0.399 5.601 5 C -0.192 4.192 6 C 0.080 3.920 7 H 0.126 0.874 8 C -0.021 4.021 9 O -0.288 6.288 10 C -0.034 4.034 11 C -0.051 4.051 12 N -0.354 5.354 13 C 0.314 3.686 14 O -0.386 6.386 15 C -0.037 4.037 16 H 0.114 0.886 17 N -0.361 5.361 18 C -0.176 4.176 19 C -0.010 4.010 20 C -0.563 4.563 21 H 0.072 0.928 22 C -0.142 4.142 23 N -0.532 5.532 24 Si 0.720 3.280 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.202 1.202 28 N -0.186 5.186 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.186 0.814 33 H 0.078 0.922 34 H 0.130 0.870 35 H 0.078 0.922 36 H 0.131 0.869 37 H 0.126 0.874 38 H 0.103 0.897 39 H 0.170 0.830 40 H 0.159 0.841 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.035 0.965 44 H 0.036 0.964 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.051 9.278 20.400 22.411 hybrid contribution -1.828 -1.465 -1.682 2.884 sum -1.880 7.814 18.718 20.370 Atomic orbital electron populations 1.20299 0.87678 1.03170 1.02320 1.20035 0.97728 0.86500 1.01711 1.26614 0.95313 1.03461 1.15120 1.83445 1.07491 1.02065 1.67085 1.25922 0.93966 0.97378 1.01934 1.20243 0.91258 0.95983 0.84495 0.87444 1.23032 0.87901 0.92254 0.98955 1.88004 1.50396 1.55453 1.34916 1.23116 0.94427 1.02890 0.82967 1.22621 0.86740 0.94562 1.01196 1.48265 1.33782 1.45172 1.08200 1.21018 0.82780 0.78770 0.85984 1.90781 1.30604 1.34213 1.82977 1.21507 1.00469 0.92241 0.89512 0.88625 1.58763 1.17829 1.38929 1.20627 1.22377 1.00369 0.94705 1.00164 1.19082 0.95513 0.96949 0.89481 1.21125 1.19541 1.11155 1.04476 0.92796 1.24999 0.94961 0.97117 0.97099 1.69937 1.26990 1.39887 1.16387 0.86644 0.79411 0.83319 0.78591 1.20231 1.21178 1.20159 1.65914 1.04109 1.31817 1.16802 0.91108 0.90806 0.91048 0.81396 0.92174 0.86981 0.92180 0.86851 0.87378 0.89686 0.82985 0.84147 0.92484 0.92726 0.96458 0.96379 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.31 36.00 0.37 -0.44 16 2 C 0.07 1.03 6.74 -84.23 -0.57 0.46 16 3 C -0.27 -3.42 11.13 29.12 0.32 -3.09 16 4 S 0.14 1.87 20.19 -107.50 -2.17 -0.30 16 5 C 0.09 1.24 3.78 -13.45 -0.05 1.19 16 6 C 0.19 2.38 3.60 -68.57 -0.25 2.13 16 7 H 0.11 1.40 8.14 -51.93 -0.42 0.97 16 8 C 0.06 0.58 6.16 37.31 0.23 0.81 16 9 O -0.37 -3.86 10.74 -35.23 -0.38 -4.24 16 10 C 0.04 0.39 6.99 37.31 0.26 0.65 16 11 C 0.07 0.78 5.94 -3.52 -0.02 0.76 16 12 N -0.62 -8.31 3.02 -166.04 -0.50 -8.81 16 13 C 0.53 8.55 6.85 -10.98 -0.08 8.47 16 14 O -0.51 -9.37 11.43 5.56 0.06 -9.30 16 15 C 0.08 1.29 2.39 -68.86 -0.16 1.12 16 16 H 0.10 1.47 6.32 -51.93 -0.33 1.14 16 17 N -0.83 -13.95 8.94 -5.65 -0.05 -14.00 16 18 C -0.14 -2.66 4.73 -26.74 -0.13 -2.78 16 19 C 0.03 0.64 4.74 -27.88 -0.13 0.51 16 20 C -0.52 -14.26 9.11 -34.44 -0.31 -14.57 16 21 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 22 C 0.06 1.66 5.46 -17.81 -0.10 1.56 16 23 N -0.89 -25.69 13.29 55.43 0.74 -24.95 16 24 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 N -0.47 -7.44 10.35 -8.06 -0.08 -7.52 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 32 H 0.17 1.70 8.06 -52.49 -0.42 1.27 16 33 H 0.06 0.59 7.31 -51.93 -0.38 0.21 16 34 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.11 1.18 5.56 -51.93 -0.29 0.89 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.35 6.00 7.55 -39.30 -0.30 5.70 16 40 H 0.35 6.03 8.58 -39.29 -0.34 5.69 16 41 H 0.06 1.08 7.59 -51.93 -0.39 0.69 16 42 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.02 0.43 6.87 -51.93 -0.36 0.07 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 372.02 15.07 5.61 5.61 Total: -1.00 -32.51 372.02 -8.98 -41.49 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -6.57 Total: 9.11 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -0.61 Total: -3.22 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: 0.10 Total: -55.29 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -0.31 Total: -13.54 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.17 Total: -0.30 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.51 -8.98 -41.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424181950.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.839 kcal (2) G-P(sol) polarization free energy of solvation -32.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds