Wall clock time and date at job start Tue Mar 31 2020 22:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33633 * 122.74601 * 2 1 4 4 S 1.76200 * 107.92295 * 179.97438 * 3 2 1 5 5 C 1.70973 * 90.28041 * 0.27488 * 4 3 2 6 6 C 1.50701 * 124.91598 * 179.83794 * 5 4 3 7 7 H 1.09004 * 109.68229 * 166.75585 * 6 5 4 8 8 C 1.53294 * 109.68316 * 46.24150 * 6 5 4 9 9 O 1.42963 * 109.22502 * 187.97645 * 8 6 5 10 10 C 1.42952 * 114.17055 * 62.57912 * 9 8 6 11 11 C 1.53302 * 109.22343 * 297.42164 * 10 9 8 12 12 N 1.47154 * 109.68386 * 287.27769 * 6 5 4 13 13 C 1.34776 * 120.97986 * 350.23293 * 12 6 5 14 14 O 1.21283 * 119.99904 * 4.56150 * 13 12 6 15 15 C 1.50705 * 119.99921 * 184.56730 * 13 12 6 16 16 H 1.09002 * 109.46784 * 319.99931 * 15 13 12 17 17 N 1.46899 * 109.47140 * 200.00101 * 15 13 12 18 18 C 1.52998 * 109.47208 * 79.99947 * 15 13 12 19 19 C 1.52995 * 109.47300 * 185.00016 * 18 15 13 20 20 C 1.50703 * 109.47257 * 180.02562 * 19 18 15 21 21 H 1.07989 * 120.00119 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99926 * 180.02562 * 20 19 18 23 23 N 1.31526 * 120.00106 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00112 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.47032 * 59.99530 * 24 22 20 26 26 H 1.48498 * 109.46970 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.46882 * 299.99853 * 24 22 20 28 28 N 1.29029 * 110.17141 * 359.84194 * 5 4 3 29 29 H 1.09001 * 109.47161 * 269.70608 * 1 2 3 30 30 H 1.09002 * 109.47041 * 149.70707 * 1 2 3 31 31 H 1.09004 * 109.47707 * 29.71076 * 1 2 3 32 32 H 1.08002 * 126.04551 * 0.04244 * 3 2 1 33 33 H 1.08998 * 109.50924 * 307.89859 * 8 6 5 34 34 H 1.08999 * 109.51531 * 67.99727 * 8 6 5 35 35 H 1.09003 * 109.51296 * 57.34358 * 10 9 8 36 36 H 1.08996 * 109.51873 * 177.44948 * 10 9 8 37 37 H 1.08997 * 109.68364 * 172.02034 * 11 10 9 38 38 H 1.08998 * 109.67977 * 292.54443 * 11 10 9 39 39 H 1.00892 * 111.00123 * 176.04939 * 17 15 13 40 40 H 1.00906 * 110.99860 * 299.99834 * 17 15 13 41 41 H 1.09003 * 109.47244 * 304.99993 * 18 15 13 42 42 H 1.09003 * 109.47111 * 64.99609 * 18 15 13 43 43 H 1.09003 * 109.46953 * 300.00155 * 19 18 15 44 44 H 1.09003 * 109.47371 * 59.99752 * 19 18 15 45 45 H 0.96998 * 119.99941 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2298 1.1240 0.0000 4 16 3.9332 0.6732 0.0007 5 6 3.5039 -0.9818 -0.0072 6 6 4.4834 -2.1270 -0.0142 7 1 3.9631 -3.0565 0.2168 8 6 5.5788 -1.8758 1.0284 9 8 6.5990 -2.8674 0.8875 10 6 7.2702 -2.8415 -0.3744 11 6 6.2614 -3.1422 -1.4889 12 7 5.1168 -2.2294 -1.3385 13 6 4.6624 -1.5083 -2.3825 14 8 3.7724 -0.7005 -2.2200 15 6 5.2599 -1.7059 -3.7518 16 1 6.3390 -1.8315 -3.6626 17 7 4.9709 -0.5320 -4.5863 18 6 4.6531 -2.9529 -4.3980 19 6 5.3480 -3.2247 -5.7336 20 6 4.7498 -4.4527 -6.3704 21 1 3.9540 -4.9861 -5.8722 22 6 5.2194 -4.8957 -7.5887 23 7 6.1891 -4.2463 -8.1954 24 14 4.4785 -6.4181 -8.3778 25 1 3.0283 -6.1992 -8.6103 26 1 5.1530 -6.6818 -9.6742 27 1 4.6648 -7.5834 -7.4762 28 7 2.2198 -1.1083 -0.0065 29 1 -0.3633 -0.0053 1.0277 30 1 -0.3633 -0.8874 -0.5184 31 1 -0.3635 0.8926 -0.5093 32 1 1.8391 2.1308 0.0006 33 1 6.0089 -0.8863 0.8733 34 1 5.1496 -1.9335 2.0286 35 1 7.7065 -1.8555 -0.5346 36 1 8.0585 -3.5942 -0.3831 37 1 6.7303 -2.9860 -2.4604 38 1 5.9210 -4.1744 -1.4071 39 1 5.4154 -0.6114 -5.4885 40 1 3.9761 -0.3941 -4.6842 41 1 4.7902 -3.8083 -3.7364 42 1 3.5885 -2.7924 -4.5683 43 1 5.2109 -2.3694 -6.3952 44 1 6.4126 -3.3853 -5.5633 45 1 6.5192 -4.5578 -9.0527 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424181950.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:29 Heat of formation + Delta-G solvation = -43.326444 kcal Electronic energy + Delta-G solvation = -28323.874404 eV Core-core repulsion = 24467.838713 eV Total energy + Delta-G solvation = -3856.035690 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.98647 -40.42562 -39.57355 -37.23409 -36.00805 -34.94718 -34.01698 -31.76454 -31.72136 -29.54166 -28.45077 -27.99301 -26.33697 -25.67204 -23.78996 -23.26824 -22.00904 -20.73168 -20.27886 -19.12662 -18.44874 -18.10160 -17.71056 -17.05536 -16.74280 -16.63271 -16.45153 -16.19563 -16.00671 -15.66900 -15.40115 -15.14605 -14.92124 -14.72039 -14.40794 -14.12150 -13.98656 -13.84833 -13.52117 -13.40018 -13.29256 -13.08752 -12.93863 -12.66180 -12.56907 -12.50299 -12.14389 -12.01727 -11.85388 -11.68261 -11.35130 -11.29731 -10.92001 -10.57487 -10.53363 -10.24690 -9.73281 -9.65571 -9.08104 -8.23235 -6.33454 -0.17505 0.58917 0.91310 1.38573 1.39659 1.47090 1.49753 1.54015 2.06573 2.38336 2.55539 3.00817 3.10430 3.34497 3.65258 3.69313 3.82056 3.90915 3.94584 3.99113 4.15721 4.19705 4.23127 4.31939 4.41942 4.49644 4.53810 4.60175 4.75622 4.77286 4.80246 4.86902 4.88114 4.98932 5.02522 5.19900 5.41819 5.43293 5.61752 5.77661 5.93163 5.97014 6.17763 6.20463 6.40946 6.80802 6.90058 7.01435 7.35671 8.87066 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.013117 B = 0.003361 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.055709 B = 8329.718748 C = 9339.081771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.049 3.951 3 C -0.268 4.268 4 S 0.156 5.844 5 C 0.072 3.928 6 C 0.184 3.816 7 H 0.101 0.899 8 C 0.065 3.935 9 O -0.376 6.376 10 C 0.047 3.953 11 C 0.065 3.935 12 N -0.611 5.611 13 C 0.523 3.477 14 O -0.536 6.536 15 C 0.086 3.914 16 H 0.112 0.888 17 N -0.825 5.825 18 C -0.117 4.117 19 C 0.035 3.965 20 C -0.547 4.547 21 H 0.050 0.950 22 C 0.010 3.990 23 N -0.924 5.924 24 Si 0.955 3.045 25 H -0.274 1.274 26 H -0.281 1.281 27 H -0.267 1.267 28 N -0.501 5.501 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.194 0.806 33 H 0.064 0.936 34 H 0.131 0.869 35 H 0.067 0.933 36 H 0.139 0.861 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.353 0.647 40 H 0.341 0.659 41 H 0.062 0.938 42 H 0.035 0.965 43 H 0.002 0.998 44 H 0.007 0.993 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.523 8.377 20.916 22.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.084 4.084 3 C -0.407 4.407 4 S 0.412 5.588 5 C -0.205 4.205 6 C 0.077 3.923 7 H 0.119 0.881 8 C -0.013 4.013 9 O -0.293 6.293 10 C -0.030 4.030 11 C -0.057 4.057 12 N -0.348 5.348 13 C 0.311 3.689 14 O -0.412 6.412 15 C -0.030 4.030 16 H 0.129 0.871 17 N -0.357 5.357 18 C -0.157 4.157 19 C -0.002 4.002 20 C -0.585 4.585 21 H 0.068 0.932 22 C -0.189 4.189 23 N -0.563 5.563 24 Si 0.780 3.220 25 H -0.200 1.200 26 H -0.206 1.206 27 H -0.192 1.192 28 N -0.219 5.219 29 H 0.107 0.893 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.211 0.789 33 H 0.083 0.917 34 H 0.149 0.851 35 H 0.085 0.915 36 H 0.157 0.843 37 H 0.126 0.874 38 H 0.106 0.894 39 H 0.168 0.832 40 H 0.154 0.846 41 H 0.080 0.920 42 H 0.054 0.946 43 H 0.020 0.980 44 H 0.025 0.975 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.304 9.135 21.542 23.400 hybrid contribution -1.929 -1.412 -2.021 3.130 sum -1.625 7.723 19.520 21.055 Atomic orbital electron populations 1.20364 0.85907 1.03319 1.03534 1.20539 0.99162 0.86511 1.02142 1.26980 0.95122 1.04443 1.14197 1.83282 1.07796 1.01202 1.66506 1.26170 0.93961 0.98405 1.01974 1.20429 0.91922 0.95378 0.84564 0.88115 1.23047 0.87047 0.92365 0.98886 1.88008 1.50307 1.55576 1.35446 1.23237 0.94034 1.04224 0.81538 1.22841 0.86440 0.94172 1.02246 1.48285 1.33981 1.44534 1.08003 1.20848 0.82586 0.79179 0.86277 1.90772 1.31475 1.35434 1.83471 1.21413 1.01171 0.90545 0.89821 0.87066 1.58780 1.17482 1.38834 1.20561 1.22090 0.98745 0.96528 0.98353 1.18925 0.94963 0.95226 0.91113 1.21547 1.19600 1.12309 1.05035 0.93172 1.25796 0.95344 1.00041 0.97688 1.70040 1.28118 1.41388 1.16790 0.85652 0.78556 0.79922 0.77849 1.19951 1.20602 1.19194 1.65952 1.05009 1.33136 1.17788 0.89319 0.92149 0.89344 0.78904 0.91748 0.85148 0.91450 0.84302 0.87421 0.89429 0.83189 0.84605 0.91971 0.94616 0.98011 0.97469 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.49 10.31 71.24 0.73 -0.75 16 2 C 0.05 1.34 6.74 41.52 0.28 1.62 16 3 C -0.27 -6.58 11.13 66.77 0.74 -5.84 16 4 S 0.16 3.93 20.19 -56.49 -1.14 2.79 16 5 C 0.07 2.05 3.78 88.52 0.33 2.38 16 6 C 0.18 4.52 3.60 44.22 0.16 4.68 16 7 H 0.10 2.59 8.14 -2.38 -0.02 2.57 16 8 C 0.07 1.19 6.16 72.08 0.44 1.64 16 9 O -0.38 -6.96 10.74 -148.98 -1.60 -8.56 16 10 C 0.05 0.72 6.99 72.08 0.50 1.23 16 11 C 0.06 1.32 5.94 86.35 0.51 1.83 16 12 N -0.61 -15.94 3.02 -797.61 -2.41 -18.35 16 13 C 0.52 16.76 6.85 87.66 0.60 17.36 16 14 O -0.54 -19.50 11.43 -3.04 -0.03 -19.53 16 15 C 0.09 2.81 2.39 44.17 0.11 2.92 16 16 H 0.11 3.30 6.32 -2.39 -0.02 3.29 16 17 N -0.83 -27.79 8.94 -171.80 -1.54 -29.32 16 18 C -0.12 -4.59 4.73 30.59 0.14 -4.45 16 19 C 0.03 1.68 4.74 29.85 0.14 1.82 16 20 C -0.55 -29.90 9.11 25.60 0.23 -29.67 16 21 H 0.05 2.71 7.74 -2.92 -0.02 2.69 16 22 C 0.01 0.57 5.46 84.65 0.46 1.03 16 23 N -0.92 -53.35 13.29 21.45 0.28 -53.07 16 24 Si 0.96 43.19 29.54 68.60 2.03 45.22 16 25 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 26 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 27 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 28 N -0.50 -15.84 10.35 -179.41 -1.86 -17.69 16 29 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.09 1.47 8.12 -2.38 -0.02 1.46 16 32 H 0.19 3.51 8.06 -2.91 -0.02 3.49 16 33 H 0.06 1.14 7.31 -2.39 -0.02 1.12 16 34 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.11 2.20 5.56 -2.39 -0.01 2.19 16 38 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.35 12.05 7.55 -89.70 -0.68 11.37 16 40 H 0.34 12.05 8.58 -89.69 -0.77 11.28 16 41 H 0.06 2.34 7.59 -2.39 -0.02 2.33 16 42 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.00 0.08 6.87 -2.39 -0.02 0.07 16 44 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 45 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -69.30 372.02 -1.29 -70.58 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: -0.42 Total: 32.15 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: 5.40 Total: -4.21 kcal Atomic # 7 Polarization: -112.91 SS G_CDS: -5.52 Total: -118.43 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -1.63 Total: -28.10 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -1.14 Total: 2.79 kcal Total: -69.30 -1.29 -70.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424181950.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.258 kcal (2) G-P(sol) polarization free energy of solvation -69.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds