Wall clock time and date at job start Tue Mar 31 2020 23:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.47429 * 2 1 4 4 N 1.29030 * 124.91493 * 89.99951 * 3 2 1 5 5 C 1.31776 * 117.12600 * 180.02562 * 4 3 2 6 6 C 1.50699 * 122.75183 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.47104 * 305.02037 * 6 5 4 8 8 N 1.46507 * 109.46925 * 179.97438 * 7 6 5 9 9 C 1.34782 * 119.99662 * 180.02562 * 8 7 6 10 10 O 1.21590 * 119.99977 * 359.97438 * 9 8 7 11 11 N 1.34772 * 119.99817 * 180.02562 * 9 8 7 12 12 C 1.47021 * 125.64937 * 359.94913 * 11 9 8 13 13 C 1.54370 * 107.28813 * 181.13182 * 12 11 9 14 14 C 1.55147 * 102.92092 * 22.14333 * 13 12 11 15 15 O 1.42905 * 111.00578 * 82.63751 * 14 13 12 16 16 C 1.50702 * 111.00308 * 206.45025 * 14 13 12 17 17 H 1.08002 * 120.00299 * 356.82421 * 16 14 13 18 18 C 1.37884 * 119.99942 * 176.53980 * 16 14 13 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 14 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 14 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 C 1.47423 * 125.64837 * 179.97438 * 11 9 8 25 25 C 1.33640 * 114.50134 * 0.22601 * 5 4 3 26 26 S 1.70971 * 124.91722 * 269.99690 * 3 2 1 27 27 H 1.08994 * 109.46990 * 300.00304 * 1 2 3 28 28 H 1.09004 * 109.46605 * 59.99873 * 1 2 3 29 29 H 1.08994 * 109.47140 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46990 * 239.99696 * 2 1 3 31 31 H 1.09004 * 109.46605 * 120.00127 * 2 1 3 32 32 H 1.09006 * 109.47235 * 185.02236 * 6 5 4 33 33 H 1.09007 * 109.47196 * 65.02499 * 6 5 4 34 34 H 1.08997 * 109.47000 * 60.00240 * 7 6 5 35 35 H 1.08997 * 109.47537 * 299.99705 * 7 6 5 36 36 H 0.96995 * 120.00225 * 0.02562 * 8 7 6 37 37 H 1.09001 * 109.88518 * 300.52094 * 12 11 9 38 38 H 1.09002 * 109.88165 * 61.68403 * 12 11 9 39 39 H 1.09001 * 110.70699 * 263.79361 * 13 12 11 40 40 H 1.09008 * 110.75075 * 140.51110 * 13 12 11 41 41 H 0.96701 * 113.99475 * 183.17547 * 15 14 13 42 42 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 43 43 H 1.08996 * 110.36708 * 36.99367 * 24 11 9 44 44 H 1.09002 * 110.46021 * 274.71461 * 24 11 9 45 45 H 1.08000 * 126.03946 * 179.76869 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2786 2.1170 1.0580 5 6 2.7134 3.3481 0.8795 6 6 3.0394 4.2718 2.0247 7 6 1.8262 4.3846 2.9501 8 7 2.1434 5.2822 4.0637 9 6 1.2184 5.5330 5.0114 10 8 0.1206 5.0149 4.9417 11 7 1.5099 6.3591 6.0356 12 6 2.7915 7.0494 6.2416 13 6 2.6720 7.8574 7.5515 14 6 1.5267 7.1304 8.3043 15 8 2.0178 5.9808 8.9969 16 6 0.8223 8.0677 9.2511 17 1 1.1738 9.0822 9.3678 18 6 -0.2746 7.6319 9.9639 19 7 -0.7026 6.3965 9.8217 20 14 -1.1523 8.7960 11.1316 21 1 -0.4791 10.1194 11.1102 22 1 -2.5658 8.9532 10.7042 23 1 -1.1103 8.2410 12.5084 24 6 0.5966 6.7197 7.1353 25 6 2.8366 3.7122 -0.4005 26 16 2.3588 2.3434 -1.4019 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.2923 5.2581 1.6354 33 1 3.8866 3.8734 2.5831 34 1 1.5733 3.3985 3.3394 35 1 0.9791 4.7831 2.3918 36 1 3.0189 5.6958 4.1191 37 1 3.5960 6.3192 6.3292 38 1 2.9883 7.7225 5.4071 39 1 2.4004 8.8922 7.3426 40 1 3.6000 7.8087 8.1213 41 1 1.3304 5.4667 9.4422 42 1 -1.4740 6.0897 10.3235 43 1 -0.0129 5.8618 7.4189 44 1 -0.0388 7.5561 6.8441 45 1 3.1718 4.6746 -0.7579 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591944815.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:16:21 Heat of formation + Delta-G solvation = -66.528960 kcal Electronic energy + Delta-G solvation = -26643.428293 eV Core-core repulsion = 22786.386467 eV Total energy + Delta-G solvation = -3857.041827 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.32789 -40.90346 -39.14153 -36.54065 -36.04889 -35.00175 -34.18956 -32.54688 -31.49562 -29.81774 -29.34736 -27.04307 -26.34459 -24.84222 -23.78663 -22.58449 -21.45285 -21.10492 -20.60173 -19.32528 -18.91596 -18.32563 -17.40904 -17.02744 -16.93893 -16.38245 -16.21742 -16.04315 -15.60919 -15.39807 -15.27779 -14.82260 -14.74565 -14.58066 -14.35752 -14.00486 -13.75009 -13.50917 -13.43722 -13.27472 -12.88464 -12.84606 -12.69174 -12.54795 -12.48948 -12.31135 -12.19185 -12.17099 -12.07975 -12.02132 -11.36452 -11.20127 -10.65987 -10.57863 -10.36911 -10.33759 -10.21030 -9.66532 -9.32393 -8.24465 -6.41671 -0.25531 0.43310 0.75380 1.41057 1.44292 1.55393 1.60376 1.83234 2.14223 2.38642 3.01379 3.03487 3.15782 3.81241 3.81914 3.96759 4.06329 4.12392 4.17808 4.21197 4.28030 4.30490 4.36412 4.48691 4.53826 4.64276 4.68703 4.77233 4.90339 4.93889 4.98397 5.05252 5.07369 5.11049 5.18826 5.30595 5.31686 5.39118 5.46360 5.47513 5.77209 6.04583 6.18816 6.66348 6.81577 7.06843 7.29580 7.36577 7.56617 8.81160 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.023524 B = 0.002020 C = 0.001927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.988265 B =13860.487254 C =14523.959397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.049 4.049 3 C 0.037 3.963 4 N -0.505 5.505 5 C 0.051 3.949 6 C -0.041 4.041 7 C 0.156 3.844 8 N -0.727 5.727 9 C 0.709 3.291 10 O -0.649 6.649 11 N -0.633 5.633 12 C 0.106 3.894 13 C -0.110 4.110 14 C 0.231 3.769 15 O -0.589 6.589 16 C -0.553 4.553 17 H 0.072 0.928 18 C 0.022 3.978 19 N -0.918 5.918 20 Si 0.966 3.034 21 H -0.261 1.261 22 H -0.284 1.284 23 H -0.280 1.280 24 C 0.126 3.874 25 C -0.254 4.254 26 S 0.154 5.846 27 H 0.037 0.963 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.112 0.888 31 H 0.089 0.911 32 H 0.118 0.882 33 H 0.095 0.905 34 H 0.042 0.958 35 H 0.047 0.953 36 H 0.412 0.588 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.374 0.626 42 H 0.269 0.731 43 H 0.037 0.963 44 H 0.041 0.959 45 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.673 -6.508 -24.517 27.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.090 4.090 3 C -0.240 4.240 4 N -0.220 5.220 5 C -0.081 4.081 6 C -0.081 4.081 7 C 0.031 3.969 8 N -0.385 5.385 9 C 0.410 3.590 10 O -0.531 6.531 11 N -0.369 5.369 12 C -0.016 4.016 13 C -0.148 4.148 14 C 0.190 3.810 15 O -0.397 6.397 16 C -0.592 4.592 17 H 0.090 0.910 18 C -0.178 4.178 19 N -0.558 5.558 20 Si 0.791 3.209 21 H -0.185 1.185 22 H -0.210 1.210 23 H -0.206 1.206 24 C 0.002 3.998 25 C -0.393 4.393 26 S 0.409 5.591 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.105 0.895 30 H 0.130 0.870 31 H 0.107 0.893 32 H 0.136 0.864 33 H 0.114 0.886 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.249 0.751 37 H 0.092 0.908 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.223 0.777 42 H 0.078 0.922 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 10.192 -7.263 -25.409 28.325 hybrid contribution -1.088 0.784 1.987 2.397 sum 9.105 -6.479 -23.423 25.952 Atomic orbital electron populations 1.21759 0.93329 1.03531 1.01774 1.20375 0.96821 0.86530 1.05278 1.27526 1.02397 1.02826 0.91297 1.66074 1.15793 1.06870 1.33302 1.20156 1.01896 0.91265 0.94799 1.20298 0.96830 0.98917 0.92088 1.20923 0.97778 0.92306 0.85908 1.44844 1.16339 1.51930 1.25339 1.15764 0.84048 0.79279 0.79881 1.90849 1.25172 1.57759 1.79367 1.47846 1.17049 1.47578 1.24427 1.22161 0.84727 0.95849 0.98831 1.22610 0.99184 0.98883 0.94105 1.19896 0.89953 0.83653 0.87457 1.86068 1.39745 1.42400 1.71476 1.21857 1.13328 0.99010 1.24964 0.91008 1.25884 0.97191 0.96797 0.97945 1.69804 1.26231 1.17367 1.42357 0.85380 0.77916 0.79305 0.78253 1.18511 1.21009 1.20609 1.22692 0.93129 0.97750 0.86243 1.27199 1.11276 1.05650 0.95195 1.83728 1.59456 1.04562 1.11325 0.94369 0.91870 0.89505 0.87011 0.89280 0.86396 0.88644 0.93953 0.93476 0.75107 0.90831 0.88759 0.89103 0.89527 0.77660 0.92185 0.94390 0.94085 0.77799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.90 71.98 0.71 -1.28 16 2 C -0.05 -0.67 6.52 29.85 0.19 -0.48 16 3 C 0.04 0.70 6.64 88.52 0.59 1.29 16 4 N -0.51 -12.25 10.34 -179.41 -1.86 -14.10 16 5 C 0.05 1.04 6.08 41.52 0.25 1.29 16 6 C -0.04 -0.75 5.82 29.85 0.17 -0.58 16 7 C 0.16 4.39 5.58 86.38 0.48 4.87 16 8 N -0.73 -22.00 5.52 -478.53 -2.64 -24.64 16 9 C 0.71 30.38 8.49 179.05 1.52 31.90 16 10 O -0.65 -34.57 16.60 -4.00 -0.07 -34.64 16 11 N -0.63 -26.76 3.33 -829.62 -2.76 -29.52 16 12 C 0.11 3.41 6.15 86.75 0.53 3.94 16 13 C -0.11 -4.11 6.13 31.80 0.19 -3.92 16 14 C 0.23 11.33 0.88 -10.14 -0.01 11.32 16 15 O -0.59 -31.03 13.17 -148.98 -1.96 -33.00 16 16 C -0.55 -29.00 8.26 25.60 0.21 -28.79 16 17 H 0.07 3.61 7.78 -2.91 -0.02 3.58 16 18 C 0.02 1.19 5.29 84.66 0.45 1.64 16 19 N -0.92 -51.41 10.69 21.45 0.23 -51.18 16 20 Si 0.97 42.32 29.54 68.60 2.03 44.35 16 21 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 24 C 0.13 6.41 5.50 86.86 0.48 6.88 16 25 C -0.25 -3.83 11.07 66.78 0.74 -3.09 16 26 S 0.15 2.11 23.18 -56.49 -1.31 0.80 16 27 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.12 1.39 8.03 -2.38 -0.02 1.37 16 33 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.04 1.47 8.08 -2.39 -0.02 1.45 16 35 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.41 9.19 7.46 -92.71 -0.69 8.49 16 37 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.09 3.13 8.03 -2.39 -0.02 3.11 16 40 H 0.09 3.02 8.14 -2.38 -0.02 3.00 16 41 H 0.37 20.94 7.26 -74.06 -0.54 20.40 16 42 H 0.27 14.42 8.31 -92.70 -0.77 13.65 16 43 H 0.04 2.25 7.47 -2.39 -0.02 2.23 16 44 H 0.04 2.16 8.03 -2.39 -0.02 2.14 16 45 H 0.21 1.77 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -75.24 385.89 -2.03 -77.28 By element: Atomic # 1 Polarization: 39.85 SS G_CDS: -0.21 Total: 39.63 kcal Atomic # 6 Polarization: 18.49 SS G_CDS: 6.52 Total: 25.01 kcal Atomic # 7 Polarization: -112.41 SS G_CDS: -7.03 Total: -119.44 kcal Atomic # 8 Polarization: -65.60 SS G_CDS: -2.03 Total: -67.63 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -1.31 Total: 0.80 kcal Total: -75.24 -2.03 -77.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591944815.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.748 kcal (2) G-P(sol) polarization free energy of solvation -75.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds