Wall clock time and date at job start Tue Mar 31 2020 23:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50706 * 109.47222 * 2 1 4 4 N 1.29022 * 124.91641 * 89.71850 * 3 2 1 5 5 C 1.31791 * 117.12054 * 179.81644 * 4 3 2 6 6 C 1.50700 * 122.74601 * 180.22754 * 5 4 3 7 7 H 1.08999 * 109.46717 * 145.26598 * 6 5 4 8 8 C 1.53002 * 109.46995 * 265.26143 * 6 5 4 9 9 N 1.46500 * 109.47465 * 25.25921 * 6 5 4 10 10 C 1.34774 * 119.99703 * 154.99940 * 9 6 5 11 11 O 1.21595 * 120.00040 * 0.02562 * 10 9 6 12 12 N 1.34777 * 119.99997 * 180.02562 * 10 9 6 13 13 C 1.47428 * 125.64687 * 359.68960 * 12 10 9 14 14 C 1.55128 * 104.72066 * 155.81842 * 13 12 10 15 15 C 1.55155 * 101.48602 * 37.29817 * 14 13 12 16 16 O 1.42896 * 110.72053 * 82.69464 * 15 14 13 17 17 C 1.50703 * 110.87340 * 205.89648 * 15 14 13 18 18 H 1.08003 * 119.99619 * 355.06481 * 17 15 14 19 19 C 1.37879 * 119.99968 * 175.06288 * 17 15 14 20 20 N 1.31512 * 120.00187 * 0.02562 * 19 17 15 21 21 Si 1.86806 * 119.99863 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47109 * 59.99737 * 21 19 17 23 23 H 1.48493 * 109.47080 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46635 * 299.99959 * 21 19 17 25 25 C 1.47022 * 125.65040 * 180.02562 * 12 10 9 26 26 C 1.33641 * 114.50066 * 0.46688 * 5 4 3 27 27 S 1.70982 * 124.91206 * 270.02150 * 3 2 1 28 28 H 1.08998 * 109.47475 * 300.00931 * 1 2 3 29 29 H 1.09007 * 109.46942 * 60.00296 * 1 2 3 30 30 H 1.08992 * 109.47210 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47567 * 239.99800 * 2 1 3 32 32 H 1.09004 * 109.47189 * 119.99252 * 2 1 3 33 33 H 1.09010 * 109.47059 * 59.99896 * 8 6 5 34 34 H 1.08995 * 109.47298 * 180.02562 * 8 6 5 35 35 H 1.09002 * 109.46919 * 300.00718 * 8 6 5 36 36 H 0.96990 * 120.00018 * 335.00966 * 9 6 5 37 37 H 1.08996 * 110.36668 * 274.74850 * 13 12 10 38 38 H 1.09003 * 110.36196 * 37.07301 * 13 12 10 39 39 H 1.08998 * 111.19356 * 279.19266 * 14 13 12 40 40 H 1.09000 * 110.90390 * 155.27432 * 14 13 12 41 41 H 0.96708 * 114.00205 * 185.02310 * 16 15 14 42 42 H 0.97001 * 120.00025 * 180.02562 * 20 19 17 43 43 H 1.09000 * 109.88480 * 300.43719 * 25 12 10 44 44 H 1.09002 * 109.87928 * 61.44675 * 25 12 10 45 45 H 1.07992 * 126.03851 * 179.79090 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2736 2.1189 1.0579 5 6 2.7133 3.3483 0.8792 6 6 3.0397 4.2719 2.0244 7 1 3.8871 4.9015 1.7532 8 6 1.8270 5.1532 2.3305 9 7 3.3791 3.4798 3.2092 10 6 4.1659 4.0059 4.1687 11 8 4.5936 5.1380 4.0512 12 7 4.4786 3.2770 5.2584 13 6 4.0256 1.9007 5.5305 14 6 5.0922 1.3179 6.4944 15 6 5.4209 2.5528 7.3745 16 8 4.4588 2.6982 8.4210 17 6 6.8130 2.4518 7.9429 18 1 7.3996 1.5599 7.7794 19 6 7.3376 3.4982 8.6716 20 7 6.6231 4.5841 8.8710 21 14 9.0634 3.3734 9.3755 22 1 10.0363 3.1826 8.2700 23 1 9.3889 4.6208 10.1123 24 1 9.1366 2.2170 10.3044 25 6 5.3223 3.7252 6.3759 26 6 2.8411 3.7106 -0.4008 27 16 2.3581 2.3436 -1.4021 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5137 0.8901 33 1 0.9794 4.5235 2.6016 34 1 2.0632 5.8215 3.1585 35 1 1.5744 5.7424 1.4490 36 1 3.0377 2.5768 3.3029 37 1 3.0455 1.9112 6.0072 38 1 3.9931 1.3225 4.6070 39 1 5.9739 0.9809 5.9492 40 1 4.6738 0.5103 7.0951 41 1 4.5740 3.4976 8.9529 42 1 6.9923 5.3204 9.3834 43 1 6.3156 3.9846 6.0097 44 1 4.8681 4.5901 6.8595 45 1 3.1809 4.6713 -0.7583 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591954859.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:23 Heat of formation + Delta-G solvation = -36.993657 kcal Electronic energy + Delta-G solvation = -27517.940429 eV Core-core repulsion = 23662.179349 eV Total energy + Delta-G solvation = -3855.761080 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.50628 -39.40627 -37.43584 -35.40623 -34.19572 -33.81644 -32.18233 -31.14297 -29.75354 -28.80354 -27.64198 -26.01455 -25.07035 -23.98703 -22.54894 -21.52115 -19.97959 -19.63153 -19.31627 -18.13727 -17.34304 -17.00950 -15.75596 -15.74950 -15.19157 -15.03410 -14.90941 -14.67435 -14.49430 -14.29205 -13.77922 -13.45201 -13.37049 -12.96428 -12.82720 -12.80776 -12.45382 -12.31343 -12.07717 -12.04148 -11.71524 -11.62064 -11.51667 -11.39042 -11.16651 -10.99051 -10.76405 -10.61685 -10.47330 -10.12816 -9.89792 -9.66450 -9.55011 -9.26653 -9.05567 -8.73613 -8.63510 -8.27266 -7.69140 -6.23785 -4.32284 0.44217 1.08585 1.44208 2.50974 3.18846 3.26559 3.31092 3.33325 3.69284 3.81310 4.30189 4.44568 4.56251 4.70848 4.82913 4.90035 5.03935 5.12672 5.21491 5.26837 5.35230 5.44134 5.45723 5.57042 5.60101 5.76567 5.77531 5.82909 5.89354 5.93759 6.09240 6.17585 6.24924 6.56703 6.77818 6.81827 6.94878 7.06100 7.32595 7.38355 7.51140 7.74791 7.77480 8.08972 8.60722 8.71642 9.19802 9.34085 9.42685 10.83988 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.019112 B = 0.002582 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.734262 B =10840.630192 C =11353.817677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.048 4.048 3 C 0.056 3.944 4 N -0.465 5.465 5 C 0.070 3.930 6 C 0.239 3.761 7 H 0.102 0.898 8 C -0.157 4.157 9 N -0.740 5.740 10 C 0.717 3.283 11 O -0.600 6.600 12 N -0.629 5.629 13 C 0.104 3.896 14 C -0.115 4.115 15 C 0.248 3.752 16 O -0.585 6.585 17 C -0.537 4.537 18 H 0.065 0.935 19 C 0.071 3.929 20 N -0.893 5.893 21 Si 0.903 3.097 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C 0.124 3.876 26 C -0.252 4.252 27 S 0.116 5.884 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.402 0.598 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.382 0.618 42 H 0.270 0.730 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.991 -6.572 -20.343 24.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.089 4.089 3 C -0.222 4.222 4 N -0.179 5.179 5 C -0.062 4.062 6 C 0.130 3.870 7 H 0.120 0.880 8 C -0.216 4.216 9 N -0.398 5.398 10 C 0.418 3.582 11 O -0.479 6.479 12 N -0.366 5.366 13 C -0.020 4.020 14 C -0.153 4.153 15 C 0.208 3.792 16 O -0.394 6.394 17 C -0.576 4.576 18 H 0.084 0.916 19 C -0.133 4.133 20 N -0.532 5.532 21 Si 0.731 3.269 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.200 1.200 25 C 0.002 3.998 26 C -0.392 4.392 27 S 0.371 5.629 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.115 0.885 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.238 0.762 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.232 0.768 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -12.036 -6.494 -21.201 25.230 hybrid contribution 1.205 0.820 1.248 1.918 sum -10.831 -5.675 -19.953 23.402 Atomic orbital electron populations 1.21766 0.93383 1.02652 1.02702 1.20251 0.96793 0.87407 1.04467 1.27084 1.02589 1.01754 0.90816 1.65926 1.14644 1.05605 1.31757 1.20407 1.00070 0.91488 0.94254 1.19141 0.98210 0.89121 0.80500 0.88017 1.22191 0.97278 0.99617 1.02510 1.45048 1.54977 1.19046 1.20713 1.15495 0.79217 0.84031 0.79411 1.90872 1.59645 1.17977 1.79429 1.47936 1.52880 1.15306 1.20476 1.22271 0.98571 0.82847 0.98263 1.22752 0.97351 0.98651 0.96575 1.19501 0.87653 0.88203 0.83868 1.86105 1.56254 1.49173 1.47828 1.21453 0.99221 1.02588 1.34311 0.91649 1.25070 0.98272 0.94775 0.95148 1.69691 1.37715 1.05803 1.39979 0.86466 0.83778 0.77495 0.79183 1.20064 1.21097 1.20031 1.22847 0.92729 0.99450 0.84813 1.26710 1.12342 1.04634 0.95478 1.83910 1.60703 1.05454 1.12837 0.91799 0.92483 0.91303 0.89643 0.88496 0.92342 0.90810 0.91879 0.76172 0.92021 0.92605 0.90558 0.90668 0.76804 0.91976 0.91834 0.91902 0.80281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.89 37.16 0.37 -0.50 16 2 C -0.05 -0.33 6.52 -27.88 -0.18 -0.51 16 3 C 0.06 0.54 6.64 -13.46 -0.09 0.45 16 4 N -0.46 -5.65 9.52 -8.05 -0.08 -5.73 16 5 C 0.07 0.86 5.80 -84.22 -0.49 0.37 16 6 C 0.24 3.38 2.91 -69.08 -0.20 3.18 16 7 H 0.10 1.53 7.58 -51.93 -0.39 1.14 16 8 C -0.16 -2.01 9.47 37.16 0.35 -1.65 16 9 N -0.74 -12.32 5.02 -59.81 -0.30 -12.62 16 10 C 0.72 15.13 8.45 -86.92 -0.73 14.39 16 11 O -0.60 -14.63 16.33 5.28 0.09 -14.55 16 12 N -0.63 -13.60 3.32 -176.09 -0.59 -14.19 16 13 C 0.10 1.92 6.58 -2.41 -0.02 1.90 16 14 C -0.12 -2.35 6.24 -24.47 -0.15 -2.51 16 15 C 0.25 6.11 0.85 -89.94 -0.08 6.03 16 16 O -0.58 -14.88 13.07 -35.23 -0.46 -15.34 16 17 C -0.54 -14.25 8.13 -34.44 -0.28 -14.53 16 18 H 0.07 1.70 7.78 -52.48 -0.41 1.29 16 19 C 0.07 1.87 5.28 -17.82 -0.09 1.78 16 20 N -0.89 -24.15 10.96 55.43 0.61 -23.55 16 21 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 C 0.12 3.09 5.23 -3.06 -0.02 3.08 16 26 C -0.25 -2.49 11.14 29.12 0.32 -2.17 16 27 S 0.12 0.95 23.18 -107.50 -2.49 -1.54 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.40 6.28 6.29 -40.82 -0.26 6.02 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.06 0.88 7.29 -51.93 -0.38 0.50 16 39 H 0.08 1.51 8.04 -51.93 -0.42 1.09 16 40 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 41 H 0.38 9.94 7.45 45.56 0.34 10.28 16 42 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.06 1.74 7.81 -51.93 -0.41 1.33 16 44 H 0.06 1.71 7.92 -51.93 -0.41 1.30 16 45 H 0.18 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 383.37 15.07 5.78 5.78 Total: -1.00 -31.10 383.37 -9.87 -40.97 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: -6.12 Total: 15.73 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: -1.29 Total: 9.31 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: -0.35 Total: -56.08 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -0.37 Total: -29.89 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.49 Total: -1.54 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.10 -9.87 -40.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591954859.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.978 kcal (2) G-P(sol) polarization free energy of solvation -31.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds