Wall clock time and date at job start Tue Mar 31 2020 23:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.47005 * 2 1 4 4 N 1.31987 * 122.71803 * 89.97472 * 3 2 1 5 5 C 1.29619 * 116.92216 * 180.02562 * 4 3 2 6 6 N 1.38998 * 124.94756 * 179.97438 * 5 4 3 7 7 C 1.34780 * 120.00300 * 179.72479 * 6 5 4 8 8 O 1.21286 * 119.99638 * 0.28736 * 7 6 5 9 9 C 1.50696 * 120.00417 * 180.27849 * 7 6 5 10 10 N 1.46896 * 109.47506 * 180.02562 * 9 7 6 11 11 C 1.47450 * 110.99822 * 69.87499 * 10 9 7 12 12 C 1.54316 * 107.23380 * 123.26096 * 11 10 9 13 13 C 1.55143 * 103.01724 * 22.28046 * 12 11 10 14 14 O 1.42895 * 110.98689 * 82.48032 * 13 12 11 15 15 C 1.50704 * 110.98926 * 206.25514 * 13 12 11 16 16 H 1.07993 * 119.99981 * 116.90809 * 15 13 12 17 17 C 1.37878 * 119.99809 * 296.91126 * 15 13 12 18 18 N 1.31516 * 120.00575 * 5.05580 * 17 15 13 19 19 Si 1.86798 * 119.99654 * 185.05892 * 17 15 13 20 20 H 1.48505 * 109.47442 * 84.99405 * 19 17 15 21 21 H 1.48504 * 109.47316 * 204.99654 * 19 17 15 22 22 H 1.48502 * 109.47252 * 324.99694 * 19 17 15 23 23 C 1.47839 * 111.00004 * 190.71601 * 10 9 7 24 24 S 1.70973 * 110.10906 * 0.25044 * 5 4 3 25 25 C 1.33444 * 122.71618 * 270.02080 * 3 2 1 26 26 C 1.50703 * 125.96985 * 359.97438 * 25 3 2 27 27 H 1.09005 * 109.46920 * 299.99584 * 1 2 3 28 28 H 1.08996 * 109.47323 * 60.00025 * 1 2 3 29 29 H 1.09002 * 109.46723 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46920 * 240.00416 * 2 1 3 31 31 H 1.08996 * 109.47323 * 119.99975 * 2 1 3 32 32 H 0.96996 * 119.99894 * 0.02562 * 6 5 4 33 33 H 1.09009 * 109.47122 * 300.00610 * 9 7 6 34 34 H 1.09003 * 109.47121 * 59.99950 * 9 7 6 35 35 H 1.09004 * 109.88821 * 242.66424 * 11 10 9 36 36 H 1.09000 * 109.88703 * 3.85005 * 11 10 9 37 37 H 1.08999 * 110.70397 * 140.66835 * 12 11 10 38 38 H 1.09000 * 110.69998 * 263.90363 * 12 11 10 39 39 H 0.96702 * 114.00551 * 54.61471 * 14 13 12 40 40 H 0.96994 * 120.00368 * 180.02562 * 18 17 15 41 41 H 1.08996 * 110.37966 * 332.46547 * 23 10 9 42 42 H 1.09006 * 110.37241 * 94.81297 * 23 10 9 43 43 H 1.09009 * 109.46892 * 90.00630 * 26 25 3 44 44 H 1.08999 * 109.47301 * 210.00265 * 26 25 3 45 45 H 1.08996 * 109.47202 * 330.00453 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2697 2.0936 1.1105 5 6 2.6991 3.3096 0.9796 6 7 3.0004 4.1652 2.0327 7 6 3.4467 5.4120 1.7815 8 8 3.5804 5.7890 0.6365 9 6 3.7794 6.3375 2.9232 10 7 4.2400 7.6267 2.3904 11 6 3.1302 8.3642 1.7590 12 6 3.0345 9.7352 2.4609 13 6 4.4529 9.9199 3.0617 14 8 5.3624 10.4236 2.0813 15 6 4.4143 10.8191 4.2705 16 1 4.6980 10.4344 5.2389 17 6 4.0166 12.1328 4.1400 18 7 3.5765 12.5748 2.9821 19 14 4.1030 13.2849 5.6078 20 1 5.4696 13.8573 5.7081 21 1 3.1181 14.3827 5.4341 22 1 3.7900 12.5307 6.8482 23 6 4.8149 8.4678 3.4616 24 16 2.8335 3.7103 -0.6771 25 6 2.2724 2.1009 -1.1227 26 6 2.0898 1.5845 -2.5267 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 2.8937 3.8636 2.9484 33 1 2.8908 6.4941 3.5349 34 1 4.5666 5.8940 3.5330 35 1 3.3347 8.5046 0.6975 36 1 2.1980 7.8147 1.8897 37 1 2.8157 10.5228 1.7399 38 1 2.2821 9.7127 3.2492 39 1 5.0684 11.2401 1.6547 40 1 3.2971 13.4991 2.8902 41 1 4.3675 8.2163 4.4231 42 1 5.8972 8.3439 3.5017 43 1 1.0767 1.8023 -2.8651 44 1 2.8063 2.0706 -3.1887 45 1 2.2542 0.5071 -2.5417 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592152046.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:21 Heat of formation + Delta-G solvation = -33.245898 kcal Electronic energy + Delta-G solvation = -26928.397222 eV Core-core repulsion = 23072.798658 eV Total energy + Delta-G solvation = -3855.598565 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.64421 -39.76140 -38.16329 -35.52985 -34.63800 -33.37849 -32.17320 -31.65024 -30.47051 -28.21778 -27.44921 -26.15315 -24.42087 -24.20780 -23.01864 -21.43718 -20.32805 -19.68890 -19.21307 -18.12183 -17.16015 -16.91880 -16.56417 -16.12915 -15.32000 -15.13155 -14.88839 -14.53748 -14.38922 -14.16786 -14.15396 -13.86320 -13.33667 -13.25695 -12.77273 -12.70882 -12.54080 -12.43333 -12.37937 -12.13046 -11.79763 -11.36753 -11.28120 -11.25248 -11.17507 -10.98745 -10.80416 -10.70222 -10.43244 -10.35477 -9.93055 -9.84665 -9.77685 -9.25219 -9.13166 -8.63829 -8.20260 -8.11091 -7.76187 -6.22977 -4.31010 0.67530 1.08635 1.81895 2.20940 2.44789 2.87277 3.21261 3.28217 3.29980 4.23095 4.29012 4.51104 4.59972 4.77556 4.88294 5.04272 5.05145 5.08935 5.16130 5.21300 5.32284 5.33812 5.55310 5.59052 5.61090 5.65007 5.75444 5.84930 5.87752 5.94640 6.00125 6.09864 6.21749 6.43408 6.59401 6.75584 6.82832 7.01297 7.31565 7.44091 7.50785 7.51735 7.70230 7.77934 7.81664 8.13652 8.70347 9.37515 9.45895 10.84019 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032130 B = 0.002152 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.249402 B =13009.997911 C =13312.485938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.047 4.047 3 C 0.086 3.914 4 N -0.515 5.515 5 C 0.246 3.754 6 N -0.630 5.630 7 C 0.512 3.488 8 O -0.475 6.475 9 C 0.040 3.960 10 N -0.511 5.511 11 C 0.050 3.950 12 C -0.146 4.146 13 C 0.253 3.747 14 O -0.576 6.576 15 C -0.537 4.537 16 H 0.061 0.939 17 C 0.073 3.927 18 N -0.892 5.892 19 Si 0.899 3.101 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.059 3.941 24 S 0.245 5.755 25 C -0.292 4.292 26 C -0.066 4.066 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.422 0.578 33 H 0.071 0.929 34 H 0.108 0.892 35 H 0.073 0.927 36 H 0.031 0.969 37 H 0.080 0.920 38 H 0.056 0.944 39 H 0.375 0.625 40 H 0.266 0.734 41 H 0.050 0.950 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.422 -21.815 -5.919 23.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.087 4.087 3 C -0.046 4.046 4 N -0.238 5.238 5 C -0.121 4.121 6 N -0.282 5.282 7 C 0.298 3.702 8 O -0.346 6.346 9 C -0.092 4.092 10 N -0.235 5.235 11 C -0.077 4.077 12 C -0.186 4.186 13 C 0.213 3.787 14 O -0.383 6.383 15 C -0.575 4.575 16 H 0.079 0.921 17 C -0.130 4.130 18 N -0.530 5.530 19 Si 0.727 3.273 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.068 4.068 24 S 0.496 5.504 25 C -0.414 4.414 26 C -0.125 4.125 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.260 0.740 33 H 0.089 0.911 34 H 0.126 0.874 35 H 0.091 0.909 36 H 0.050 0.950 37 H 0.098 0.902 38 H 0.075 0.925 39 H 0.224 0.776 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.387 -21.181 -6.965 22.724 hybrid contribution -1.385 0.294 1.994 2.445 sum -5.772 -20.887 -4.971 22.233 Atomic orbital electron populations 1.21697 0.94471 1.01694 1.02308 1.20085 0.96059 0.89488 1.03024 1.19601 1.01423 0.97768 0.85789 1.66137 1.20356 1.04625 1.32651 1.23312 1.02124 0.91936 0.94692 1.43065 1.64473 1.12295 1.08339 1.21452 0.75803 0.80427 0.92538 1.90653 1.48631 1.72994 1.22276 1.22072 1.01580 0.92621 0.92885 1.63424 1.30032 1.01407 1.28660 1.22864 0.90126 0.94864 0.99855 1.23341 1.00887 0.94532 0.99795 1.19503 0.84406 0.87994 0.86809 1.86172 1.49510 1.45245 1.57378 1.21475 1.45768 0.95893 0.94375 0.92108 1.24988 0.93568 0.98152 0.96281 1.69776 1.42651 1.16625 1.23990 0.86504 0.78015 0.80272 0.82534 1.20332 1.21202 1.19938 1.23075 0.99528 0.93209 0.90985 1.85120 1.60799 1.08366 0.96080 1.26147 1.13722 1.00787 1.00745 1.20110 1.02143 1.00898 0.89376 0.92445 0.92626 0.92174 0.90331 0.90464 0.74018 0.91149 0.87424 0.90857 0.95036 0.90166 0.92529 0.77644 0.92383 0.93141 0.90608 0.91090 0.91451 0.90783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.89 37.16 0.37 -0.72 16 2 C -0.05 -0.40 6.11 -27.88 -0.17 -0.57 16 3 C 0.09 1.01 5.99 -84.20 -0.50 0.50 16 4 N -0.51 -6.86 10.58 -11.28 -0.12 -6.98 16 5 C 0.25 3.33 8.19 -87.36 -0.72 2.62 16 6 N -0.63 -7.55 5.40 -13.07 -0.07 -7.62 16 7 C 0.51 7.28 7.44 -10.99 -0.08 7.20 16 8 O -0.48 -8.27 13.01 5.55 0.07 -8.20 16 9 C 0.04 0.56 5.03 -4.98 -0.03 0.53 16 10 N -0.51 -9.56 4.85 -232.69 -1.13 -10.69 16 11 C 0.05 0.99 5.65 -2.83 -0.02 0.98 16 12 C -0.15 -3.30 5.34 -24.91 -0.13 -3.43 16 13 C 0.25 6.11 0.86 -89.63 -0.08 6.04 16 14 O -0.58 -14.89 13.14 -35.23 -0.46 -15.35 16 15 C -0.54 -13.98 8.26 -34.44 -0.28 -14.26 16 16 H 0.06 1.56 7.79 -52.49 -0.41 1.15 16 17 C 0.07 1.90 5.32 -17.82 -0.09 1.80 16 18 N -0.89 -23.50 10.85 55.43 0.60 -22.90 16 19 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 C 0.06 1.20 5.86 -2.30 -0.01 1.18 16 24 S 0.25 3.25 20.22 -107.50 -2.17 1.07 16 25 C -0.29 -3.26 6.58 -35.98 -0.24 -3.49 16 26 C -0.07 -0.51 10.09 36.01 0.36 -0.15 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.53 6.70 -51.93 -0.35 0.18 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.42 3.78 8.82 -40.82 -0.36 3.42 16 33 H 0.07 0.87 7.96 -51.92 -0.41 0.45 16 34 H 0.11 1.21 8.07 -51.93 -0.42 0.80 16 35 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 36 H 0.03 0.57 7.31 -51.93 -0.38 0.19 16 37 H 0.08 1.94 7.47 -51.93 -0.39 1.55 16 38 H 0.06 1.29 8.03 -51.93 -0.42 0.87 16 39 H 0.38 9.70 7.71 45.56 0.35 10.05 16 40 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 41 H 0.05 0.95 7.70 -51.93 -0.40 0.55 16 42 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 43 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.46 6.74 -51.93 -0.35 0.11 16 LS Contribution 377.27 15.07 5.69 5.69 Total: -1.00 -30.46 377.27 -10.29 -40.75 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -6.05 Total: 10.70 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -1.62 Total: -1.78 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: -0.72 Total: -48.17 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.39 Total: -23.56 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 3.25 SS G_CDS: -2.17 Total: 1.07 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.46 -10.29 -40.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152046.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.505 kcal (2) G-P(sol) polarization free energy of solvation -30.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds