Wall clock time and date at job start Tue Mar 31 2020 23:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.47005 * 2 1 4 4 N 1.31987 * 122.71803 * 89.97472 * 3 2 1 5 5 C 1.29619 * 116.92216 * 180.02562 * 4 3 2 6 6 N 1.38998 * 124.94756 * 179.97438 * 5 4 3 7 7 C 1.34780 * 120.00300 * 179.72479 * 6 5 4 8 8 O 1.21286 * 119.99638 * 0.28736 * 7 6 5 9 9 C 1.50696 * 120.00417 * 180.27849 * 7 6 5 10 10 N 1.46896 * 109.47506 * 180.02562 * 9 7 6 11 11 C 1.47450 * 110.99822 * 69.87499 * 10 9 7 12 12 C 1.54316 * 107.23380 * 123.26096 * 11 10 9 13 13 C 1.55143 * 103.01724 * 22.28046 * 12 11 10 14 14 O 1.42895 * 110.98689 * 82.48032 * 13 12 11 15 15 C 1.50704 * 110.98926 * 206.25514 * 13 12 11 16 16 H 1.07993 * 119.99981 * 116.90809 * 15 13 12 17 17 C 1.37878 * 119.99809 * 296.91126 * 15 13 12 18 18 N 1.31516 * 120.00575 * 5.05580 * 17 15 13 19 19 Si 1.86798 * 119.99654 * 185.05892 * 17 15 13 20 20 H 1.48505 * 109.47442 * 84.99405 * 19 17 15 21 21 H 1.48504 * 109.47316 * 204.99654 * 19 17 15 22 22 H 1.48502 * 109.47252 * 324.99694 * 19 17 15 23 23 C 1.47839 * 111.00004 * 190.71601 * 10 9 7 24 24 S 1.70973 * 110.10906 * 0.25044 * 5 4 3 25 25 C 1.33444 * 122.71618 * 270.02080 * 3 2 1 26 26 C 1.50703 * 125.96985 * 359.97438 * 25 3 2 27 27 H 1.09005 * 109.46920 * 299.99584 * 1 2 3 28 28 H 1.08996 * 109.47323 * 60.00025 * 1 2 3 29 29 H 1.09002 * 109.46723 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46920 * 240.00416 * 2 1 3 31 31 H 1.08996 * 109.47323 * 119.99975 * 2 1 3 32 32 H 0.96996 * 119.99894 * 0.02562 * 6 5 4 33 33 H 1.09009 * 109.47122 * 300.00610 * 9 7 6 34 34 H 1.09003 * 109.47121 * 59.99950 * 9 7 6 35 35 H 1.09004 * 109.88821 * 242.66424 * 11 10 9 36 36 H 1.09000 * 109.88703 * 3.85005 * 11 10 9 37 37 H 1.08999 * 110.70397 * 140.66835 * 12 11 10 38 38 H 1.09000 * 110.69998 * 263.90363 * 12 11 10 39 39 H 0.96702 * 114.00551 * 54.61471 * 14 13 12 40 40 H 0.96994 * 120.00368 * 180.02562 * 18 17 15 41 41 H 1.08996 * 110.37966 * 332.46547 * 23 10 9 42 42 H 1.09006 * 110.37241 * 94.81297 * 23 10 9 43 43 H 1.09009 * 109.46892 * 90.00630 * 26 25 3 44 44 H 1.08999 * 109.47301 * 210.00265 * 26 25 3 45 45 H 1.08996 * 109.47202 * 330.00453 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2697 2.0936 1.1105 5 6 2.6991 3.3096 0.9796 6 7 3.0004 4.1652 2.0327 7 6 3.4467 5.4120 1.7815 8 8 3.5804 5.7890 0.6365 9 6 3.7794 6.3375 2.9232 10 7 4.2400 7.6267 2.3904 11 6 3.1302 8.3642 1.7590 12 6 3.0345 9.7352 2.4609 13 6 4.4529 9.9199 3.0617 14 8 5.3624 10.4236 2.0813 15 6 4.4143 10.8191 4.2705 16 1 4.6980 10.4344 5.2389 17 6 4.0166 12.1328 4.1400 18 7 3.5765 12.5748 2.9821 19 14 4.1030 13.2849 5.6078 20 1 5.4696 13.8573 5.7081 21 1 3.1181 14.3827 5.4341 22 1 3.7900 12.5307 6.8482 23 6 4.8149 8.4678 3.4616 24 16 2.8335 3.7103 -0.6771 25 6 2.2724 2.1009 -1.1227 26 6 2.0898 1.5845 -2.5267 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 2.8937 3.8636 2.9484 33 1 2.8908 6.4941 3.5349 34 1 4.5666 5.8940 3.5330 35 1 3.3347 8.5046 0.6975 36 1 2.1980 7.8147 1.8897 37 1 2.8157 10.5228 1.7399 38 1 2.2821 9.7127 3.2492 39 1 5.0684 11.2401 1.6547 40 1 3.2971 13.4991 2.8902 41 1 4.3675 8.2163 4.4231 42 1 5.8972 8.3439 3.5017 43 1 1.0767 1.8023 -2.8651 44 1 2.8063 2.0706 -3.1887 45 1 2.2542 0.5071 -2.5417 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592152046.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:15:20 Heat of formation + Delta-G solvation = -55.520315 kcal Electronic energy + Delta-G solvation = -26929.363114 eV Core-core repulsion = 23072.798658 eV Total energy + Delta-G solvation = -3856.564456 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.71438 -40.78364 -39.74108 -36.66059 -36.25696 -34.21967 -34.17512 -32.38228 -31.97385 -29.92847 -28.72913 -27.26946 -25.99215 -25.11381 -23.95169 -22.56435 -21.78189 -21.43014 -20.22251 -19.13221 -18.97210 -17.97814 -17.59701 -17.33355 -16.85014 -16.77731 -16.33284 -15.75253 -15.67634 -15.45478 -15.19888 -14.83433 -14.31782 -14.21188 -14.03773 -13.98698 -13.79171 -13.52592 -13.49232 -13.22081 -13.12132 -12.91071 -12.84284 -12.79534 -12.56866 -12.22325 -12.20766 -11.93621 -11.85949 -11.71714 -11.65066 -11.11025 -10.92724 -10.76261 -10.60070 -10.12089 -10.06392 -9.23452 -9.10261 -8.19122 -6.34103 -0.28237 0.13777 0.90072 1.18970 1.41631 1.42993 1.45172 1.52295 1.91763 2.39601 3.02812 3.09672 3.39027 3.61499 3.96108 4.05921 4.07888 4.10772 4.17003 4.31098 4.38756 4.41271 4.44576 4.47837 4.49459 4.73088 4.75910 4.82258 4.90417 4.93767 5.01813 5.09782 5.12025 5.16711 5.25857 5.29375 5.45617 5.47896 5.56408 5.79941 5.80692 5.90823 6.15678 6.22856 6.71709 6.75060 6.77428 7.37134 7.43753 8.86115 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.032130 B = 0.002152 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.249402 B =13009.997911 C =13312.485938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.045 4.045 3 C 0.067 3.933 4 N -0.521 5.521 5 C 0.230 3.770 6 N -0.616 5.616 7 C 0.516 3.484 8 O -0.512 6.512 9 C 0.040 3.960 10 N -0.524 5.524 11 C 0.066 3.934 12 C -0.136 4.136 13 C 0.232 3.768 14 O -0.588 6.588 15 C -0.556 4.556 16 H 0.061 0.939 17 C 0.029 3.971 18 N -0.911 5.911 19 Si 0.958 3.042 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.267 1.267 23 C 0.069 3.931 24 S 0.202 5.798 25 C -0.278 4.278 26 C -0.069 4.069 27 H 0.039 0.961 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.075 0.925 32 H 0.436 0.564 33 H 0.096 0.904 34 H 0.139 0.861 35 H 0.053 0.947 36 H 0.050 0.950 37 H 0.054 0.946 38 H 0.050 0.950 39 H 0.369 0.631 40 H 0.266 0.734 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.037 -24.106 -5.212 25.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.085 4.085 3 C -0.064 4.064 4 N -0.245 5.245 5 C -0.137 4.137 6 N -0.268 5.268 7 C 0.302 3.698 8 O -0.385 6.385 9 C -0.091 4.091 10 N -0.249 5.249 11 C -0.062 4.062 12 C -0.175 4.175 13 C 0.192 3.808 14 O -0.394 6.394 15 C -0.594 4.594 16 H 0.079 0.921 17 C -0.172 4.172 18 N -0.550 5.550 19 Si 0.784 3.216 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.191 1.191 23 C -0.058 4.058 24 S 0.453 5.547 25 C -0.400 4.400 26 C -0.127 4.127 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.119 0.881 31 H 0.094 0.906 32 H 0.277 0.723 33 H 0.113 0.887 34 H 0.157 0.843 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.217 0.783 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.090 0.910 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.015 -23.524 -6.227 24.846 hybrid contribution -1.212 0.912 1.726 2.298 sum -6.227 -22.612 -4.501 23.882 Atomic orbital electron populations 1.21672 0.93757 1.02835 1.01493 1.20215 0.96565 0.87587 1.04089 1.20174 1.01672 0.99118 0.85447 1.66183 1.20116 1.04532 1.33626 1.23433 1.03161 0.92288 0.94809 1.42813 1.63659 1.11474 1.08864 1.21456 0.75397 0.80907 0.92008 1.90663 1.50357 1.73905 1.23601 1.22207 1.03728 0.90145 0.93046 1.63235 1.30133 1.02741 1.28792 1.22613 0.91402 0.93697 0.98483 1.23131 0.99905 0.95484 0.99026 1.19820 0.85044 0.89834 0.86071 1.86167 1.50433 1.44984 1.57854 1.21788 1.45885 0.96734 0.95035 0.92106 1.25704 0.93348 0.99540 0.98622 1.69882 1.42964 1.16772 1.25375 0.85574 0.77677 0.78402 0.79925 1.20484 1.21028 1.19139 1.22910 0.99554 0.91165 0.92131 1.85243 1.61706 1.10706 0.97089 1.26493 1.12130 0.99034 1.02300 1.20287 1.03012 1.02165 0.87282 0.94213 0.92465 0.90057 0.88054 0.90607 0.72331 0.88678 0.84288 0.92827 0.93159 0.92688 0.93086 0.78333 0.92442 0.91235 0.91095 0.89853 0.91016 0.88536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.89 71.98 0.71 -1.09 16 2 C -0.04 -0.66 6.11 29.85 0.18 -0.47 16 3 C 0.07 1.46 5.99 41.45 0.25 1.71 16 4 N -0.52 -13.33 10.58 -189.59 -2.01 -15.33 16 5 C 0.23 6.06 8.19 179.21 1.47 7.53 16 6 N -0.62 -13.93 5.40 -313.65 -1.69 -15.62 16 7 C 0.52 14.04 7.44 87.65 0.65 14.69 16 8 O -0.51 -17.80 13.01 -3.05 -0.04 -17.84 16 9 C 0.04 1.01 5.03 85.56 0.43 1.44 16 10 N -0.52 -19.05 4.85 -890.09 -4.32 -23.37 16 11 C 0.07 2.59 5.65 86.64 0.49 3.08 16 12 C -0.14 -6.22 5.34 31.78 0.17 -6.05 16 13 C 0.23 11.28 0.86 -10.15 -0.01 11.27 16 14 O -0.59 -31.12 13.14 -148.98 -1.96 -33.08 16 15 C -0.56 -28.95 8.26 25.60 0.21 -28.74 16 16 H 0.06 3.08 7.79 -2.91 -0.02 3.06 16 17 C 0.03 1.49 5.32 84.65 0.45 1.94 16 18 N -0.91 -48.75 10.85 21.45 0.23 -48.52 16 19 Si 0.96 41.56 29.54 68.60 2.03 43.58 16 20 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 21 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 22 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 23 C 0.07 2.76 5.86 86.77 0.51 3.27 16 24 S 0.20 5.32 20.22 -56.49 -1.14 4.18 16 25 C -0.28 -5.80 6.58 24.60 0.16 -5.64 16 26 C -0.07 -0.90 10.09 71.24 0.72 -0.18 16 27 H 0.04 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.10 1.01 6.70 -2.38 -0.02 0.99 16 31 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.44 6.96 8.82 -92.71 -0.82 6.14 16 33 H 0.10 2.02 7.96 -2.38 -0.02 2.00 16 34 H 0.14 2.66 8.07 -2.39 -0.02 2.64 16 35 H 0.05 2.31 8.14 -2.38 -0.02 2.29 16 36 H 0.05 1.76 7.31 -2.39 -0.02 1.75 16 37 H 0.05 2.75 7.47 -2.39 -0.02 2.73 16 38 H 0.05 2.33 8.03 -2.39 -0.02 2.31 16 39 H 0.37 19.85 7.71 -74.06 -0.57 19.28 16 40 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 41 H 0.07 2.47 7.70 -2.39 -0.02 2.45 16 42 H 0.07 2.88 8.14 -2.38 -0.02 2.86 16 43 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 44 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.10 0.86 6.74 -2.39 -0.02 0.84 16 Total: -1.00 -66.51 377.27 -2.87 -69.37 By element: Atomic # 1 Polarization: 34.25 SS G_CDS: -0.36 Total: 33.89 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: 6.39 Total: 2.74 kcal Atomic # 7 Polarization: -95.06 SS G_CDS: -7.79 Total: -102.85 kcal Atomic # 8 Polarization: -48.93 SS G_CDS: -2.00 Total: -50.92 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.58 kcal Atomic # 16 Polarization: 5.32 SS G_CDS: -1.14 Total: 4.18 kcal Total: -66.51 -2.87 -69.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152046.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.854 kcal (2) G-P(sol) polarization free energy of solvation -66.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds