Wall clock time and date at job start Tue Mar 31 2020 22:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29031 * 124.91396 * 2 1 4 4 C 1.31791 * 117.12077 * 179.74692 * 3 2 1 5 5 C 1.33640 * 114.50204 * 0.51932 * 4 3 2 6 6 C 1.50694 * 126.03944 * 179.78391 * 5 4 3 7 7 N 1.46507 * 109.46717 * 89.71947 * 6 5 4 8 8 C 1.34773 * 119.99656 * 180.02562 * 7 6 5 9 9 O 1.21284 * 120.00495 * 359.97438 * 8 7 6 10 10 C 1.50700 * 119.99758 * 180.02562 * 8 7 6 11 11 C 1.53006 * 109.47029 * 179.97438 * 10 8 7 12 12 N 1.46907 * 109.46855 * 179.97438 * 11 10 8 13 13 C 1.48528 * 111.00111 * 287.39512 * 12 11 10 14 14 C 1.55099 * 103.28381 * 200.33449 * 13 12 11 15 15 C 1.54593 * 102.84490 * 37.30637 * 14 13 12 16 16 O 1.42898 * 110.30719 * 97.12142 * 15 14 13 17 17 C 1.50702 * 110.30772 * 219.18689 * 15 14 13 18 18 H 1.08002 * 120.00299 * 117.21456 * 17 15 14 19 19 C 1.37884 * 119.99942 * 296.93014 * 17 15 14 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 15 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 15 22 22 H 1.48504 * 109.47196 * 60.00645 * 21 19 17 23 23 H 1.48504 * 109.46887 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47679 * 300.00280 * 21 19 17 25 25 C 1.47903 * 110.99661 * 169.99828 * 12 11 10 26 26 S 1.70977 * 124.91907 * 180.02562 * 2 1 3 27 27 H 1.09001 * 109.47247 * 269.96005 * 1 2 3 28 28 H 1.09000 * 109.46743 * 29.96575 * 1 2 3 29 29 H 1.09001 * 109.46909 * 149.96384 * 1 2 3 30 30 H 1.08001 * 122.74625 * 180.32784 * 4 3 2 31 31 H 1.08997 * 109.47023 * 329.72171 * 6 5 4 32 32 H 1.08997 * 109.47545 * 209.71709 * 6 5 4 33 33 H 0.96997 * 119.99939 * 359.97438 * 7 6 5 34 34 H 1.09000 * 109.47690 * 59.99751 * 10 8 7 35 35 H 1.09007 * 109.47234 * 299.99260 * 10 8 7 36 36 H 1.08997 * 109.47048 * 59.99988 * 11 10 8 37 37 H 1.08993 * 109.46895 * 299.99418 * 11 10 8 38 38 H 1.09001 * 110.66718 * 318.71611 * 13 12 11 39 39 H 1.09006 * 110.66736 * 81.67838 * 13 12 11 40 40 H 1.09001 * 110.71257 * 278.99719 * 14 13 12 41 41 H 1.08998 * 110.81298 * 155.66416 * 14 13 12 42 42 H 0.96691 * 114.00808 * 62.79185 * 16 15 14 43 43 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.91924 * 26.49349 * 25 12 11 45 45 H 1.08997 * 110.08057 * 265.28894 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5512 0.8794 0.0052 5 6 3.9355 -0.4006 -0.0012 6 6 5.3575 -0.8994 -0.0021 7 7 5.8187 -1.0620 1.3789 8 6 7.0694 -1.5003 1.6244 9 8 7.8128 -1.7605 0.7021 10 6 7.5437 -1.6681 3.0449 11 6 8.9875 -2.1744 3.0440 12 7 9.4500 -2.3375 4.4288 13 6 9.6867 -1.0187 5.0697 14 6 10.6315 -1.3610 6.2512 15 6 11.5412 -2.4603 5.6564 16 8 12.7692 -1.8926 5.1963 17 6 11.8124 -3.5279 6.6849 18 1 11.4773 -4.5403 6.5138 19 6 12.4935 -3.2134 7.8418 20 7 12.9015 -1.9807 8.0502 21 14 12.8364 -4.5383 9.1132 22 1 13.6528 -5.6154 8.4978 23 1 13.5769 -3.9473 10.2566 24 1 11.5517 -5.1055 9.5961 25 6 10.7472 -3.0465 4.4743 26 16 2.4857 -1.4019 -0.0006 27 1 -0.3634 -0.0007 1.0277 28 1 -0.3633 0.8903 -0.5133 29 1 -0.3633 -0.8897 -0.5144 30 1 4.2532 1.7001 0.0108 31 1 5.9947 -0.1794 -0.5156 32 1 5.4056 -1.8590 -0.5166 33 1 5.2243 -0.8535 2.1165 34 1 6.9067 -2.3886 3.5580 35 1 7.4951 -0.7086 3.5600 36 1 9.6248 -1.4543 2.5309 37 1 9.0357 -3.1339 2.5292 38 1 10.1743 -0.3351 4.3746 39 1 8.7508 -0.5937 5.4325 40 1 10.0647 -1.7462 7.0989 41 1 11.2187 -0.4902 6.5424 42 1 13.3021 -1.4890 5.8949 43 1 13.3804 -1.7594 8.8643 44 1 11.2920 -2.8842 3.5442 45 1 10.5854 -4.1134 4.6283 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602852059.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:09 Heat of formation + Delta-G solvation = -41.627966 kcal Electronic energy + Delta-G solvation = -26068.754139 eV Core-core repulsion = 22212.792100 eV Total energy + Delta-G solvation = -3855.962039 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.34895 -39.74006 -38.28116 -35.56953 -34.94444 -32.75475 -32.05575 -31.83337 -29.95149 -28.48118 -27.84837 -25.87597 -24.55773 -23.92125 -22.65035 -20.74686 -20.13931 -19.78572 -19.36076 -18.59711 -17.23292 -17.02722 -16.42594 -15.90025 -15.45664 -15.22933 -15.05108 -14.86853 -14.44453 -14.28966 -13.98969 -13.96178 -13.62707 -13.46242 -13.12377 -13.05105 -12.60474 -12.42684 -12.26082 -12.10145 -11.87513 -11.75736 -11.33093 -11.10616 -10.91488 -10.72599 -10.49528 -10.41631 -10.26088 -10.20743 -10.10865 -9.90599 -9.70841 -9.39466 -9.28208 -9.11578 -8.55416 -8.07890 -7.78671 -6.16597 -4.22575 0.09816 0.78835 1.22573 2.26276 2.54030 3.05690 3.27835 3.32069 3.35637 3.63848 4.20480 4.34675 4.49800 4.52643 4.68484 4.87737 4.88695 4.92001 5.10801 5.14805 5.19900 5.31437 5.32042 5.37328 5.66860 5.68890 5.74391 5.90911 6.04573 6.10849 6.16782 6.24843 6.28271 6.50871 6.51903 6.96515 7.07851 7.19015 7.24620 7.31990 7.55061 7.67754 7.72605 7.87282 8.05804 8.20418 8.78804 9.44177 9.55123 10.91032 Molecular weight = 339.14amu Principal moments of inertia in cm(-1) A = 0.026855 B = 0.001723 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.383430 B =16249.339995 C =16507.902251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.049 3.951 3 N -0.478 5.478 4 C 0.064 3.936 5 C -0.251 4.251 6 C 0.201 3.799 7 N -0.734 5.734 8 C 0.518 3.482 9 O -0.537 6.537 10 C -0.132 4.132 11 C 0.063 3.937 12 N -0.516 5.516 13 C 0.028 3.972 14 C -0.116 4.116 15 C 0.242 3.758 16 O -0.594 6.594 17 C -0.527 4.527 18 H 0.061 0.939 19 C 0.068 3.932 20 N -0.900 5.900 21 Si 0.900 3.100 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C 0.056 3.944 26 S 0.141 5.859 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.178 0.822 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.403 0.597 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.040 0.960 37 H 0.075 0.925 38 H 0.033 0.967 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.382 0.618 43 H 0.266 0.734 44 H 0.037 0.963 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.005 4.714 -14.353 28.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.228 4.228 3 N -0.193 5.193 4 C -0.089 4.089 5 C -0.373 4.373 6 C 0.075 3.925 7 N -0.389 5.389 8 C 0.305 3.695 9 O -0.413 6.413 10 C -0.172 4.172 11 C -0.067 4.067 12 N -0.241 5.241 13 C -0.099 4.099 14 C -0.155 4.155 15 C 0.202 3.798 16 O -0.404 6.404 17 C -0.566 4.566 18 H 0.080 0.920 19 C -0.134 4.134 20 N -0.540 5.540 21 Si 0.728 3.272 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.201 1.201 25 C -0.071 4.071 26 S 0.396 5.604 27 H 0.107 0.893 28 H 0.109 0.891 29 H 0.101 0.899 30 H 0.195 0.805 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.237 0.763 34 H 0.120 0.880 35 H 0.112 0.888 36 H 0.058 0.942 37 H 0.094 0.906 38 H 0.052 0.948 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.233 0.767 43 H 0.076 0.924 44 H 0.055 0.945 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -24.469 3.544 -15.220 29.033 hybrid contribution 1.248 0.925 1.197 1.961 sum -23.221 4.469 -14.023 27.492 Atomic orbital electron populations 1.20495 0.84977 1.04422 1.04186 1.27197 1.02063 0.91224 1.02307 1.66363 1.04803 1.31600 1.16503 1.21842 0.91173 0.95876 1.00046 1.25961 0.99709 0.96581 1.15022 1.19457 0.86614 1.01785 0.84607 1.46168 1.15203 1.69584 1.07900 1.20946 0.80679 0.75597 0.92260 1.90721 1.54419 1.49451 1.46667 1.21604 0.99349 1.04112 0.92180 1.21925 0.92875 1.01077 0.90778 1.64729 1.28545 1.16527 1.14270 1.23380 0.98859 0.90240 0.97454 1.22991 0.96956 0.99897 0.95680 1.19361 0.81691 0.89871 0.88867 1.86100 1.35068 1.78672 1.40553 1.21667 1.36331 0.95898 1.02686 0.92038 1.25014 0.94832 0.95637 0.97898 1.69651 1.39089 1.17815 1.27472 0.86523 0.78469 0.81735 0.80478 1.20159 1.21263 1.20130 1.22815 0.87367 0.98593 0.98364 1.84161 0.97111 1.11702 1.67431 0.89275 0.89086 0.89917 0.80463 0.89236 0.90159 0.76304 0.87957 0.88846 0.94221 0.90617 0.94837 0.91826 0.91386 0.91703 0.76702 0.92359 0.94482 0.90272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.31 10.46 36.01 0.38 0.06 16 2 C 0.05 0.35 7.39 -13.46 -0.10 0.25 16 3 N -0.48 -4.32 10.54 -11.86 -0.13 -4.44 16 4 C 0.06 0.51 11.25 -19.18 -0.22 0.29 16 5 C -0.25 -1.88 5.97 -35.92 -0.21 -2.10 16 6 C 0.20 1.67 6.20 -5.19 -0.03 1.64 16 7 N -0.73 -6.58 5.55 -61.47 -0.34 -6.92 16 8 C 0.52 6.40 7.83 -10.99 -0.09 6.32 16 9 O -0.54 -8.72 15.98 5.55 0.09 -8.63 16 10 C -0.13 -1.63 5.79 -27.88 -0.16 -1.79 16 11 C 0.06 1.03 4.00 -3.82 -0.02 1.02 16 12 N -0.52 -9.93 5.25 -230.34 -1.21 -11.14 16 13 C 0.03 0.54 5.91 -1.81 -0.01 0.53 16 14 C -0.12 -2.70 5.43 -24.78 -0.13 -2.83 16 15 C 0.24 6.10 0.99 -90.42 -0.09 6.01 16 16 O -0.59 -15.79 12.92 -35.23 -0.46 -16.25 16 17 C -0.53 -14.29 8.11 -34.44 -0.28 -14.57 16 18 H 0.06 1.66 7.34 -52.49 -0.39 1.27 16 19 C 0.07 1.80 5.26 -17.82 -0.09 1.71 16 20 N -0.90 -24.16 10.88 55.43 0.60 -23.55 16 21 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 C 0.06 1.25 6.13 -2.76 -0.02 1.24 16 26 S 0.14 0.92 23.18 -107.50 -2.49 -1.57 16 27 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.18 1.15 8.06 -52.49 -0.42 0.73 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.40 2.81 8.46 -40.82 -0.35 2.47 16 34 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.09 1.05 7.37 -51.92 -0.38 0.66 16 36 H 0.04 0.71 7.79 -51.93 -0.40 0.30 16 37 H 0.08 1.28 8.04 -51.93 -0.42 0.86 16 38 H 0.03 0.65 7.81 -51.93 -0.41 0.24 16 39 H 0.06 1.06 7.80 -51.93 -0.40 0.66 16 40 H 0.07 1.66 7.86 -51.93 -0.41 1.25 16 41 H 0.06 1.56 8.02 -51.93 -0.42 1.14 16 42 H 0.38 10.24 7.17 45.56 0.33 10.57 16 43 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 44 H 0.04 0.84 7.59 -51.93 -0.39 0.44 16 45 H 0.08 1.77 7.39 -51.93 -0.38 1.39 16 LS Contribution 383.72 15.07 5.78 5.78 Total: -1.00 -31.52 383.72 -10.36 -41.87 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -6.12 Total: 11.24 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -1.07 Total: -2.22 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: -1.07 Total: -46.05 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.37 Total: -24.88 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 0.92 SS G_CDS: -2.49 Total: -1.57 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.52 -10.36 -41.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602852059.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.246 kcal (2) G-P(sol) polarization free energy of solvation -31.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds